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PI0027857 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027857
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein
Genome locationchr04:21095748..21096050
RNA-Seq ExpressionPI0027857
SyntenyPI0027857
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KYP31036.1 Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan]5.7e-2366.67Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN
        DKAKI+VI  L YPTC+K++RSFLG A FYRRFIKDFSKIA PL+ LLQKD  F+ ++ C+  F+ELK RLVS PIL +PN
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN

XP_019158165.1 PREDICTED: uncharacterized protein LOC109154882 [Ipomoea nil]5.7e-2367.9Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN
        DKAK+D+I+ L YPT +++VRSFLG A FYRRFIKDFSKIALPL  LLQK+ SFE D KCK  F+ELK+ L S PI+Q PN
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN

XP_021603241.1 uncharacterized protein LOC110608326 [Manihot esculenta]1.2e-2365.43Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN
        DKAK+DVI+ L YPTC++D+RSFLG A FYRRFIKDFS+IA PL  LLQKDV F  D++C++ FN LK++LV+ PI+Q+PN
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN

XP_028798815.1 LOW QUALITY PROTEIN: uncharacterized protein LOC114754213 [Prosopis alba]5.7e-2367.9Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN
        DKAKID+I  L YP+C+KDVRSFLG A FYRRFI+DFSKIALPL+ LLQKDV F  DD C+  ++ELK+RL + PI+Q PN
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN

XP_028802716.1 uncharacterized protein LOC114757797 [Prosopis alba]4.4e-2367.9Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN
        DKAKID+I  L YP+C+KDVRSFLG A FYRRFI+DFSKIALPL+ LLQKDV F  DD C+  ++ELK+RL + PI+Q PN
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN

TrEMBL top hitse value%identityAlignment
A0A0L9TXH6 Reverse transcriptase1.1e-2262.96Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN
        D AKI VI +L YP+C+++VRSFLG A FYRRFIKDFSK  LPL+ LLQKD+ F+ DD+CK+ F+ LKQ L++TPI+Q+P+
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN

A0A151QL68 Transposon Ty3-G Gag-Pol polyprotein2.8e-2366.67Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN
        DKAKI+VI  L YPTC+K++RSFLG A FYRRFIKDFSKIA PL+ LLQKD  F+ ++ C+  F+ELK RLVS PIL +PN
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN

A0A2K3NDP5 RT_RNaseH_2 domain-containing protein (Fragment)2.4e-2266.67Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN
        D AKI+V   L YP+C+ ++RSFLG A FY RFIKDFSKIALPL++LLQKDV+F  DDKCKK F+ LK  L STPI+Q PN
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN

A0A371EFF6 Retrovirus-related Pol polyprotein (Fragment)1.8e-2267.9Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN
        DKAKIDVI  L  PT +++VRSFLG ADFYRRFIKD+SK+ALPL++LLQKDV F  D  C + F ELK RL S PILQ+PN
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN

A0A392MXJ5 Uncharacterized protein (Fragment)4.7e-2365.43Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN
        D AKIDVI  L +PTC++++RSFLG A FYRRFIKDFSKIALPL++LLQKD+ F  DDKCK+ F+ LK+ L STP++Q P+
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.64.1e-0836.71Show/hide
Query:  KIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFE-IDDKCKKTFNELKQRLVSTPILQSPN
        KI+ IQK   PT  K++++FLG   +YR+FI +F+ IA P+T  L+K++  +  + +    F +LK  +   PIL+ P+
Subjt:  KIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFE-IDDKCKKTFNELKQRLVSTPILQSPN

P10394 Retrovirus-related Pol polyprotein from transposon 4124.4e-1039.51Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN
        D  K DVIQ    P      R F+   ++YRRFIK+F+  +  +T L +K+V FE  D+C+K F  LK +L++  +LQ P+
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN

P10401 Retrovirus-related Pol polyprotein from transposon gypsy1.2e-0743.06Show/hide
Query:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKD---VSFEIDDKCKKTFNELKQ
        D  K+  IQ+   P C+  VRSFLG A +YR FIKDF+ IA P+T +L+ +   VS  +  K    FNE ++
Subjt:  DKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKD---VSFEIDDKCKKTFNELKQ

P92523 Uncharacterized mitochondrial protein AtMg008602.1e-0735.71Show/hide
Query:  VSHDKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN
        VS D AK++ +     P    ++R FLG   +YRRF+K++ KI  PLT LL+K+ S +  +     F  LK  + + P+L  P+
Subjt:  VSHDKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus4.9e-0932.98Show/hide
Query:  VSHDKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQ-----------KDVSFEIDDKCKKTFNELKQRLVSTPILQSP
        +  D  K+  I ++  PT +K+++ FLG   +YR+FI+D++K+A PLT+L +             V   +D+   ++FN+LK  L S+ IL  P
Subjt:  VSHDKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQ-----------KDVSFEIDDKCKKTFNELKQRLVSTPILQSP

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.5e-0835.71Show/hide
Query:  VSHDKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN
        VS D AK++ +     P    ++R FLG   +YRRF+K++ KI  PLT LL+K+ S +  +     F  LK  + + P+L  P+
Subjt:  VSHDKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCACATGATAAAGCAAAAATAGACGTCATTCAAAAATTGTCATATCCTACTTGCTTAAAGGACGTTAGATCTTTCCTTGGTAGCGCCGATTTTTATAGACGATT
TATTAAGGATTTTTCTAAAATTGCTTTACCTCTAACTTCTCTCTTACAAAAAGATGTGTCATTTGAGATTGATGACAAATGCAAAAAAACATTCAATGAACTCAAGCAAA
GGTTAGTTTCTACTCCTATCCTTCAATCTCCTAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCACATGATAAAGCAAAAATAGACGTCATTCAAAAATTGTCATATCCTACTTGCTTAAAGGACGTTAGATCTTTCCTTGGTAGCGCCGATTTTTATAGACGATT
TATTAAGGATTTTTCTAAAATTGCTTTACCTCTAACTTCTCTCTTACAAAAAGATGTGTCATTTGAGATTGATGACAAATGCAAAAAAACATTCAATGAACTCAAGCAAA
GGTTAGTTTCTACTCCTATCCTTCAATCTCCTAATTGA
Protein sequenceShow/hide protein sequence
MVSHDKAKIDVIQKLSYPTCLKDVRSFLGSADFYRRFIKDFSKIALPLTSLLQKDVSFEIDDKCKKTFNELKQRLVSTPILQSPN