CuGenDBv2

Gene ID	PI0027907
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	ribonuclease H2 subunit C
Genome location	chr12:9544749..9548116
RNA-Seq Expression	PI0027907
Synteny	PI0027907
Gene Ontology terms	GO:0006401 - RNA catabolic process (biological process) GO:0032299 - ribonuclease H2 complex (cellular component)
InterPro domains	IPR013924 - Ribonuclease H2, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6583796.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]

4.3e-75

81.93

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Query:  MNAQNEGKREVIVHFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKAS
        M+++NE KREVIV FDFG+D  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTGIEVDGL+VE AYFRGRKLQGATISLPEGYSGYV+G+KS GK KAS
Subjt:  MNAQNEGKREVIVHFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKAS

Query:  EQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        E+  DSS WQVKAKF+NITYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS ALKN+S
Subjt:  EQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

XP_008459055.1 PREDICTED: uncharacterized protein C12B10.15c [Cucumis melo]

1.9e-83

91.07

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Query:  MNAQNEGKREVIV--HFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNK
        MNAQN  K E  V   FDFG+DPKALDLSGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGK+K
Subjt:  MNAQNEGKREVIV--HFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNK

Query:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        +S+QCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASAS AL NLS
Subjt:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

XP_011660323.1 uncharacterized protein C12B10.15c [Cucumis sativus]

1.3e-82

92.26

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Query:  MNAQNEGKREVIV--HFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNK
        MN QNE K EVIV   FDFGTDPKALD+SGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLN+EEAYFRGRKLQGATISLPEGYSGYVLGKKS    K
Subjt:  MNAQNEGKREVIV--HFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNK

Query:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
Subjt:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

XP_022927160.1 uncharacterized protein C12B10.15c [Cucurbita moschata]

2.2e-74

81.33

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Query:  MNAQNEGKREVIVHFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKAS
        M+++ E KREVIV FDFG+D  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTGIEVDGL+VE AYFRGRKLQGATISLPEGYSGYV+G+KS GK KAS
Subjt:  MNAQNEGKREVIVHFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKAS

Query:  EQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        E+  DSS WQVKAKF+NITYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS ALKN+S
Subjt:  EQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

XP_038893586.1 uncharacterized protein C12B10.15c [Benincasa hispida]

1.6e-77

87.35

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Query:  MNAQNEGKREVIVHFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKAS
        MNA+NE K EVIV FDF +D  ALDLSGK+HQLPC IKFDGPC VS YFKPKSTGIE DGL+VEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGK KAS
Subjt:  MNAQNEGKREVIVHFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKAS

Query:  EQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        EQ  +SSPWQVKAKF NITYWNHDTLPSQDDTFQR+FHWLTVAQALHKPVTAEDLASASTALKN+S
Subjt:  EQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M1A2 Uncharacterized protein

6.1e-83

92.26

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Query:  MNAQNEGKREVIV--HFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNK
        MN QNE K EVIV   FDFGTDPKALD+SGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLN+EEAYFRGRKLQGATISLPEGYSGYVLGKKS    K
Subjt:  MNAQNEGKREVIV--HFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNK

Query:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
Subjt:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

A0A1S3C9A8 uncharacterized protein C12B10.15c

9.4e-84

91.07

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Query:  MNAQNEGKREVIV--HFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNK
        MNAQN  K E  V   FDFG+DPKALDLSGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGK+K
Subjt:  MNAQNEGKREVIV--HFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNK

Query:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        +S+QCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASAS AL NLS
Subjt:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

A0A5A7TIT8 Ribonuclease H2 subunit C isoform X2

9.4e-84

91.07

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Query:  MNAQNEGKREVIV--HFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNK
        MNAQN  K E  V   FDFG+DPKALDLSGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGK+K
Subjt:  MNAQNEGKREVIV--HFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNK

Query:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        +S+QCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASAS AL NLS
Subjt:  ASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

A0A6J1EN41 uncharacterized protein C12B10.15c

1.0e-74

81.33

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Query:  MNAQNEGKREVIVHFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKAS
        M+++ E KREVIV FDFG+D  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTGIEVDGL+VE AYFRGRKLQGATISLPEGYSGYV+G+KS GK KAS
Subjt:  MNAQNEGKREVIVHFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKAS

Query:  EQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        E+  DSS WQVKAKF+NITYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS ALKN+S
Subjt:  EQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

A0A6J1KH29 uncharacterized protein C12B10.15c

4.0e-74

80.72

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Query:  MNAQNEGKREVIVHFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKAS
        M+++ E KREVIV FDFG+D  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTGIEVDGL+V+ AYFRGRKLQGATISLPEGY GYV+G+KSL K KAS
Subjt:  MNAQNEGKREVIVHFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKAS

Query:  EQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS
        E+  DSS WQVKAKF+NITYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA ASTALKN+S
Subjt:  EQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

SwissProt top hits

e value

%identity

Alignment

Q10448 Uncharacterized protein C12B10.15c

6.6e-10

33.9

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Query:  KLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSG-YVLGKKSLGKNKASEQCDDSSPWQVKAKFDNITYWNHDTL-
        K   LPC I +DGP PV  YF  K   I  +  +      RGR+L G  + LPE Y+G  VL    L  ++ SE+    S W + + F+ +  WN D + 
Subjt:  KLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSG-YVLGKKSLGKNKASEQCDDSSPWQVKAKFDNITYWNHDTL-

Query:  PSQDDTFQR-TFHWLTVA
         S+ D ++R    W+  A
Subjt:  PSQDDTFQR-TFHWLTVA

Q8TDP1 Ribonuclease H2 subunit C

6.6e-10

30.66

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Query:  LHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVL----GKKSLGK----NKASEQCDDSSPWQ--------VKA
        LH LPC +  DGP PV  +F P        G    E  FRGR L+G  +++P G  GYV+     K S+GK      +     +  P +          A
Subjt:  LHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVL----GKKSLGK----NKASEQCDDSSPWQ--------VKA

Query:  KFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPV
         F   T W  +T+P  D   +    W ++A A+H  V
Subjt:  KFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPV

Arabidopsis top hits

e value

%identity

Alignment

AT2G39440.1 CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

1.2e-51

63.45

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Query:  LDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKS----LGKNKASEQCDDSSPWQVKAKFDNIT
        +DLS ++HQLPC I+FDGP  VSHYFKPKS+ +E+DG+  EEA+FRGRKLQGATISLP GYSG+VL + S     GK KAS   +D+  W+VKAKF+N+T
Subjt:  LDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKS----LGKNKASEQCDDSSPWQVKAKFDNIT

Query:  YWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKN
        YWNHD+LPS+DDTF R+FHW ++A+ALHKPV  EDL + S   KN
Subjt:  YWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAATGCTCAAAACGAGGGGAAACGGGAAGTGATCGTCCATTTTGATTTTGGGACTGACCCTAAAGCTTTAGATCTCAGTGGTAAACTCCATCAGCTTCCCTGTACCAT
CAAATTCGATGGTCCTTGCCCTGTTTCTCACTATTTTAAACCCAAATCCACTGGAATTGAGGTTGATGGTTTGAATGTTGAGGAAGCTTATTTTAGAGGAAGAAAGTTGC
AAGGAGCTACCATTTCCCTTCCGGAGGGTTACTCTGGCTATGTGCTAGGGAAAAAGAGTCTTGGAAAGAATAAAGCTTCTGAACAGTGTGATGACTCAAGCCCCTGGCAG
GTGAAGGCCAAATTTGATAACATTACATATTGGAACCATGACACCCTACCGTCACAAGATGATACGTTCCAACGTACTTTTCATTGGCTGACCGTTGCACAAGCATTGCA
CAAACCTGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACTTGAGTTGA

mRNA sequence

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CAAAAGCCAAAAGGATGAAATGGAAAAGAAAAAGACAAAAAACAAAAACCAATTTGGAGCGGGAAAATGTTGGTCGACGATCCATTCTCATTTCTCAGTGTTCAAAAGAA
CGGGAAACGTAGAATCTGAAATACAATACAATGGTCAATTGAATTTCCTTCCCAGAAATCCGAAGCATCAACCTGGGTTTATTTAGGGTTTCAACTTTTAGGTTTGCTTT
ACAATCAATCAAATGAATGCTCAAAACGAGGGGAAACGGGAAGTGATCGTCCATTTTGATTTTGGGACTGACCCTAAAGCTTTAGATCTCAGTGGTAAACTCCATCAGCT
TCCCTGTACCATCAAATTCGATGGTCCTTGCCCTGTTTCTCACTATTTTAAACCCAAATCCACTGGAATTGAGGTTGATGGTTTGAATGTTGAGGAAGCTTATTTTAGAG
GAAGAAAGTTGCAAGGAGCTACCATTTCCCTTCCGGAGGGTTACTCTGGCTATGTGCTAGGGAAAAAGAGTCTTGGAAAGAATAAAGCTTCTGAACAGTGTGATGACTCA
AGCCCCTGGCAGGTGAAGGCCAAATTTGATAACATTACATATTGGAACCATGACACCCTACCGTCACAAGATGATACGTTCCAACGTACTTTTCATTGGCTGACCGTTGC
ACAAGCATTGCACAAACCTGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACTTGAGTTGATTAGGTTTAGGATCATGTGTTGTGAGAAGAAAACTTC
AAGAGACTTAGAATGGTTCCATTCTACTTCGATTTGTATTTGGTCACATTATCATCTATCTTACCAATTTATTTAATGGGTTTGGCATTTTAAACCATGATGTCACCGAA
AGAGTTTTCTTTTTTTCAATTTCATACAATTGTAGTAATACTATATACATGATTTACATTGTAAGTCTTTCCCGTCCCTATGACCTATCAAATTTTGAAACTTTTTCTTT
A

Protein sequence

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MNAQNEGKREVIVHFDFGTDPKALDLSGKLHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKNKASEQCDDSSPWQ
VKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS

PI0027907 (gene) of Melon (PI 482460) v1 genome