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PI0027910 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027910
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr03:19024791..19025329
RNA-Seq ExpressionPI0027910
SyntenyPI0027910
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033263.1 retrotransposon protein [Cucumis melo var. makuwa]6.4e-4156.44Show/hide
Query:  LKKAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDNWSHLAVKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFVDVGSNVP-GRYDGFSAYDGNDMKFP
        LK+ FQAI+EM+GP+CSGFGWNDE KCI+AEK+L+DNWSH A KGLLNK FP+YD+L YVFGRDRA G   ETF DVGSN P G YD F   DGN+  FP
Subjt:  LKKAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDNWSHLAVKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFVDVGSNVP-GRYDGFSAYDGNDMKFP

Query:  TMYSQ------------EPGRLFEGRAGLSNSKRKWGGKALETAKIICSVIEYANDQLKAIAE
         +YSQ             P R  EGR G S SKRK   +     K I   ++  N+QL+ IAE
Subjt:  TMYSQ------------EPGRLFEGRAGLSNSKRKWGGKALETAKIICSVIEYANDQLKAIAE

KAA0062588.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-4156.97Show/hide
Query:  LKKAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDNW--SHLAVKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFVDVGSNVP-GRYDGFSAYDGNDMK
        LK+ FQAI+EM+GP+CSGFGWNDE KCI+AEK+L+DNW  SH AVKGLLNKPFP+YD+L YVFGRDRA G   ETF DVGSN P G YD F   DGN+  
Subjt:  LKKAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDNW--SHLAVKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFVDVGSNVP-GRYDGFSAYDGNDMK

Query:  FPTMYSQ------------EPGRLFEGRAGLSNSKRKWGGKALETAKIICSVIEYANDQLKAIAE
        FP++YSQ             P R  EGR G S SKRK G +     + I   ++  N+QL+ IAE
Subjt:  FPTMYSQ------------EPGRLFEGRAGLSNSKRKWGGKALETAKIICSVIEYANDQLKAIAE

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]4.9e-4156.97Show/hide
Query:  LKKAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDNW--SHLAVKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFVDVGSNVP-GRYDGFSAYDGNDMK
        LK+ FQAI+EM+GP+CSGFGWNDE KCIIAEK+L+DNW  SH A KGLLNKPFP+YD+L YVFGRDRA G   ETF DVGSN P G YD F   DGN+  
Subjt:  LKKAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDNW--SHLAVKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFVDVGSNVP-GRYDGFSAYDGNDMK

Query:  FPTMYSQ------------EPGRLFEGRAGLSNSKRKWGGKALETAKIICSVIEYANDQLKAIAE
        FP +YSQ             P R  EGR G S SKRK G +     + I   ++  N+QL+ IAE
Subjt:  FPTMYSQ------------EPGRLFEGRAGLSNSKRKWGGKALETAKIICSVIEYANDQLKAIAE

TYK10915.1 retrotransposon protein [Cucumis melo var. makuwa]8.3e-4156.36Show/hide
Query:  LKKAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDNW--SHLAVKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFVDVGSNVP-GRYDGFSAYDGNDMK
        LK+ FQAI+EM+GP+CSGFGWNDE KCI+AEK+L+DNW  SH A KGLLNKPFP+YD+L YVFGRDRA G   ETF DVGSN P G YD F   DGN+  
Subjt:  LKKAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDNW--SHLAVKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFVDVGSNVP-GRYDGFSAYDGNDMK

Query:  FPTMYSQ------------EPGRLFEGRAGLSNSKRKWGGKALETAKIICSVIEYANDQLKAIAE
        FP +YSQ             P R  EGR G S SKRK G +     + I   ++  N+QL+ IAE
Subjt:  FPTMYSQ------------EPGRLFEGRAGLSNSKRKWGGKALETAKIICSVIEYANDQLKAIAE

XP_031744343.1 uncharacterized protein LOC116404989 [Cucumis sativus]4.9e-4153.09Show/hide
Query:  LKKAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDNW--SHLAVKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFVDVGSNVPGRYDGFSAYDGNDMKF
        LK+++Q I+EM+GPSC GFGWND++KCI+AEK+L+DNW  SH A KGLLNK FP+YD+L YVFG+DRA+G   ETF DVGSNVP  ++ F   D NDM+F
Subjt:  LKKAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDNW--SHLAVKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFVDVGSNVPGRYDGFSAYDGNDMKF

Query:  PTMYSQ----------EPGRLFEGRAGLSNSKRKWGGKALETAKIICSVIEYANDQLKAIAE
        P+M S            P R  + R   S SKR+ GG+ LETA +I   +    D+L+ IAE
Subjt:  PTMYSQ----------EPGRLFEGRAGLSNSKRKWGGKALETAKIICSVIEYANDQLKAIAE

TrEMBL top hitse value%identityAlignment
A0A5A7SS54 Retrotransposon protein3.1e-4156.44Show/hide
Query:  LKKAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDNWSHLAVKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFVDVGSNVP-GRYDGFSAYDGNDMKFP
        LK+ FQAI+EM+GP+CSGFGWNDE KCI+AEK+L+DNWSH A KGLLNK FP+YD+L YVFGRDRA G   ETF DVGSN P G YD F   DGN+  FP
Subjt:  LKKAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDNWSHLAVKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFVDVGSNVP-GRYDGFSAYDGNDMKFP

Query:  TMYSQ------------EPGRLFEGRAGLSNSKRKWGGKALETAKIICSVIEYANDQLKAIAE
         +YSQ             P R  EGR G S SKRK   +     K I   ++  N+QL+ IAE
Subjt:  TMYSQ------------EPGRLFEGRAGLSNSKRKWGGKALETAKIICSVIEYANDQLKAIAE

A0A5A7TRV1 Retrotransposon protein4.0e-4156.36Show/hide
Query:  LKKAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDNW--SHLAVKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFVDVGSNVP-GRYDGFSAYDGNDMK
        LK+ FQAI+EM+GP+CSGFGWNDE KCI+AEK+L+DNW  SH A KGLLNKPFP+YD+L YVFGRDRA G   ETF DVGSN P G YD F   DGN+  
Subjt:  LKKAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDNW--SHLAVKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFVDVGSNVP-GRYDGFSAYDGNDMK

Query:  FPTMYSQ------------EPGRLFEGRAGLSNSKRKWGGKALETAKIICSVIEYANDQLKAIAE
        FP +YSQ             P R  EGR G S SKRK G +     + I   ++  N+QL+ IAE
Subjt:  FPTMYSQ------------EPGRLFEGRAGLSNSKRKWGGKALETAKIICSVIEYANDQLKAIAE

A0A5A7V4T0 Retrotransposon protein8.1e-4256.97Show/hide
Query:  LKKAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDNW--SHLAVKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFVDVGSNVP-GRYDGFSAYDGNDMK
        LK+ FQAI+EM+GP+CSGFGWNDE KCI+AEK+L+DNW  SH AVKGLLNKPFP+YD+L YVFGRDRA G   ETF DVGSN P G YD F   DGN+  
Subjt:  LKKAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDNW--SHLAVKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFVDVGSNVP-GRYDGFSAYDGNDMK

Query:  FPTMYSQ------------EPGRLFEGRAGLSNSKRKWGGKALETAKIICSVIEYANDQLKAIAE
        FP++YSQ             P R  EGR G S SKRK G +     + I   ++  N+QL+ IAE
Subjt:  FPTMYSQ------------EPGRLFEGRAGLSNSKRKWGGKALETAKIICSVIEYANDQLKAIAE

A0A5A7VES2 Retrotransposon protein2.4e-4156.97Show/hide
Query:  LKKAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDNW--SHLAVKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFVDVGSNVP-GRYDGFSAYDGNDMK
        LK+ FQAI+EM+GP+CSGFGWNDE KCIIAEK+L+DNW  SH A KGLLNKPFP+YD+L YVFGRDRA G   ETF DVGSN P G YD F   DGN+  
Subjt:  LKKAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDNW--SHLAVKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFVDVGSNVP-GRYDGFSAYDGNDMK

Query:  FPTMYSQ------------EPGRLFEGRAGLSNSKRKWGGKALETAKIICSVIEYANDQLKAIAE
        FP +YSQ             P R  EGR G S SKRK G +     + I   ++  N+QL+ IAE
Subjt:  FPTMYSQ------------EPGRLFEGRAGLSNSKRKWGGKALETAKIICSVIEYANDQLKAIAE

A0A5D3DCZ1 Retrotransposon protein4.0e-4156.36Show/hide
Query:  LKKAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDNW--SHLAVKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFVDVGSNVP-GRYDGFSAYDGNDMK
        LK+ FQAI+EM+GP+CSGFGWNDE KCI+AEK+L+DNW  SH A KGLLNKPFP+YD+L YVFGRDRA G   ETF DVGSN P G YD F   DGN+  
Subjt:  LKKAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDNW--SHLAVKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFVDVGSNVP-GRYDGFSAYDGNDMK

Query:  FPTMYSQ------------EPGRLFEGRAGLSNSKRKWGGKALETAKIICSVIEYANDQLKAIAE
        FP +YSQ             P R  EGR G S SKRK G +     + I   ++  N+QL+ IAE
Subjt:  FPTMYSQ------------EPGRLFEGRAGLSNSKRKWGGKALETAKIICSVIEYANDQLKAIAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAAAAAAGCGTTCCAAGCCATATCTGAAATGAAGGGTCCATCATGTAGTGGGTTCGGTTGGAATGATGAGCTCAAATGCATTATTGCCGAGAAAGACTTGTACGA
CAATTGGAGTCATCTAGCCGTGAAGGGCCTCCTAAACAAACCATTTCCCCATTACGACGACCTATGCTACGTATTTGGAAGAGATCGTGCAATAGGAGGTCGCGTTGAAA
CCTTTGTCGATGTTGGGTCTAACGTGCCTGGACGGTACGATGGATTCTCCGCTTATGACGGGAACGATATGAAGTTCCCCACGATGTACAGTCAGGAACCCGGTCGATTG
TTTGAGGGTAGGGCTGGTTTGAGCAATTCGAAGAGGAAATGGGGAGGGAAGGCATTAGAGACGGCGAAAATTATTTGCAGTGTCATAGAATATGCGAATGACCAGCTGAA
GGCCATTGCAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAAAAAAGCGTTCCAAGCCATATCTGAAATGAAGGGTCCATCATGTAGTGGGTTCGGTTGGAATGATGAGCTCAAATGCATTATTGCCGAGAAAGACTTGTACGA
CAATTGGAGTCATCTAGCCGTGAAGGGCCTCCTAAACAAACCATTTCCCCATTACGACGACCTATGCTACGTATTTGGAAGAGATCGTGCAATAGGAGGTCGCGTTGAAA
CCTTTGTCGATGTTGGGTCTAACGTGCCTGGACGGTACGATGGATTCTCCGCTTATGACGGGAACGATATGAAGTTCCCCACGATGTACAGTCAGGAACCCGGTCGATTG
TTTGAGGGTAGGGCTGGTTTGAGCAATTCGAAGAGGAAATGGGGAGGGAAGGCATTAGAGACGGCGAAAATTATTTGCAGTGTCATAGAATATGCGAATGACCAGCTGAA
GGCCATTGCAGAATGA
Protein sequenceShow/hide protein sequence
MLKKAFQAISEMKGPSCSGFGWNDELKCIIAEKDLYDNWSHLAVKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFVDVGSNVPGRYDGFSAYDGNDMKFPTMYSQEPGRL
FEGRAGLSNSKRKWGGKALETAKIICSVIEYANDQLKAIAE