; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0027940 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027940
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPolyprotein
Genome locationchr08:11069411..11070726
RNA-Seq ExpressionPI0027940
SyntenyPI0027940
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34145.1 hypothetical protein [Cucumis melo subsp. melo]2.5e-5773.65Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP
        MSS +G  RGR +STSSKG RPSSS N  PSPMSA QY MD GFT VTRS++R S I I SPTESSTPPRPS NL+RPSGG+ QMRPPASP S  ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSRIFPEGFNFLPEDLRKTR
        PTTYSQAV  +KRF+PRPEIK+YFQK +V+YDPIIEPEYQSLT++E VS+IFP+ FNFLPEDL+K +
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSRIFPEGFNFLPEDLRKTR

KAA0026217.1 hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa]3.6e-5673.94Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP
        MSS +G  RGR +STSSKG+R SSS N APSPMSADQYAMD GFT VTRS++R SGI I  PTESSTPPRPSANL+RP G + QM+PPASP S  +SSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSRIFPEGFNFLPEDLRK
        PTTYSQAV P+KRF+PRP+IK YFQK +V+YDP IE EYQSLT++E VS+IFPE FNFLPEDLRK
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSRIFPEGFNFLPEDLRK

KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]9.4e-6576.54Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP
        MSS +G  RGR +STSSKG+RP SS N APSP+SADQYAMD GFTTVTR  +RS GI I SPTESSTPPRPS NL+RPS G+ QMRPPASP S  ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSRIFPEGFNFLPEDLRKTRKFYEFILVDTNF
        PTTYSQAV P+KRF+PRPEIK+YFQK +V+YDPIIE EYQSLT +ETVS+IFPE FNFL EDLRKTRKFYEFIL DT +
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSRIFPEGFNFLPEDLRKTRKFYEFILVDTNF

KAE8646253.1 hypothetical protein Csa_023844, partial [Cucumis sativus]8.9e-5575.16Show/hide
Query:  RVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTPPTTYSQAVAP
        R +STSS+G+RPSSS N APSPMSADQYAMD GFTTVTRS+ARSS I+I SPT+SSTPPR SANL+RPS  + QMRP ASPLS  ESSTPPTTYSQ + P
Subjt:  RVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTPPTTYSQAVAP

Query:  EKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSRIFPEGFNFLPEDL
        +KRF+PR EIK+YFQK V++YD IIEPEYQSLT++ETVS+IFP+ FNFLP+DL
Subjt:  EKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSRIFPEGFNFLPEDL

TYJ98361.1 hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]3.1e-6053.04Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP
        MSS +G  RGR +STSSKG+ PSSS N APSPMS DQYAMD G+TTV +S+++SSGI I SP ESSTPPRPS NL+ P G + QMR  ASP S  ESST 
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSRIFPEGFNFLPEDLRKTRKFYEFILVDTNFNTASYPQYKMLVKNLKIKWWD
        PTTYSQAV P+K+F+PR EIK+YFQK +VIYDPIIE EYQ                                                            
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSRIFPEGFNFLPEDLRKTRKFYEFILVDTNFNTASYPQYKMLVKNLKIKWWD

Query:  KYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSASSSIQEDDELASPEYDLNDPFLDSQP
                         +NG LQDIDQ+KNA+FLNDK K LAAL QAT DADFQRLLSTAVN S+SSK A S IQED+E    EYDL+DPFLDSQP
Subjt:  KYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSASSSIQEDDELASPEYDLNDPFLDSQP

TrEMBL top hitse value%identityAlignment
A0A5A7TM80 Putative Retrotransposon protein4.6e-6576.54Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP
        MSS +G  RGR +STSSKG+RP SS N APSP+SADQYAMD GFTTVTR  +RS GI I SPTESSTPPRPS NL+RPS G+ QMRPPASP S  ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSRIFPEGFNFLPEDLRKTRKFYEFILVDTNF
        PTTYSQAV P+KRF+PRPEIK+YFQK +V+YDPIIE EYQSLT +ETVS+IFPE FNFL EDLRKTRKFYEFIL DT +
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSRIFPEGFNFLPEDLRKTRKFYEFILVDTNF

A0A5D3BI61 Uncharacterized protein1.5e-6053.04Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP
        MSS +G  RGR +STSSKG+ PSSS N APSPMS DQYAMD G+TTV +S+++SSGI I SP ESSTPPRPS NL+ P G + QMR  ASP S  ESST 
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSRIFPEGFNFLPEDLRKTRKFYEFILVDTNFNTASYPQYKMLVKNLKIKWWD
        PTTYSQAV P+K+F+PR EIK+YFQK +VIYDPIIE EYQ                                                            
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSRIFPEGFNFLPEDLRKTRKFYEFILVDTNFNTASYPQYKMLVKNLKIKWWD

Query:  KYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSASSSIQEDDELASPEYDLNDPFLDSQP
                         +NG LQDIDQ+KNA+FLNDK K LAAL QAT DADFQRLLSTAVN S+SSK A S IQED+E    EYDL+DPFLDSQP
Subjt:  KYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSASSSIQEDDELASPEYDLNDPFLDSQP

A0A5D3BM67 Uncharacterized protein9.9e-5277.37Show/hide
Query:  MSADQYAMDFGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTPPTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYD
        MSADQYAMD GFTTVTRS++RSS IRIES TESSTPPRPSANL+RP GG  QMRPPASP S  ESSTPPTTYSQ V P+KRF+PRPEIK+YFQK +V+YD
Subjt:  MSADQYAMDFGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTPPTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYD

Query:  PIIEPEYQSLTIDETVSRIFPEGFNFLPEDLRKTRKF
         IIEPEYQS+T+++TVS+IF + FN LPEDLRKTR F
Subjt:  PIIEPEYQSLTIDETVSRIFPEGFNFLPEDLRKTRKF

A0A5D3E4J4 Uncharacterized protein1.7e-5673.94Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP
        MSS +G  RGR +STSSKG+R SSS N APSPMSADQYAMD GFT VTRS++R SGI I  PTESSTPPRPSANL+RP G + QM+PPASP S  +SSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSRIFPEGFNFLPEDLRK
        PTTYSQAV P+KRF+PRP+IK YFQK +V+YDP IE EYQSLT++E VS+IFPE FNFLPEDLRK
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSRIFPEGFNFLPEDLRK

E5GCE6 Uncharacterized protein1.2e-5773.65Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP
        MSS +G  RGR +STSSKG RPSSS N  PSPMSA QY MD GFT VTRS++R S I I SPTESSTPPRPS NL+RPSGG+ QMRPPASP S  ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSRIFPEGFNFLPEDLRKTR
        PTTYSQAV  +KRF+PRPEIK+YFQK +V+YDPIIEPEYQSLT++E VS+IFP+ FNFLPEDL+K +
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSRIFPEGFNFLPEDLRKTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGC
AATGGATTTTGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGGCATACGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTG
TCCGTCCTTCTGGCGGAATAACCCAAATGAGGCCTCCTGCCTCTCCTTTGTCAAAATTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCGTTGCACCAGAAAAA
CGGTTCATACCAAGGCCCGAGATCAAAACTTACTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTATCGATGAGACAGTTTC
AAGAATTTTCCCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGGAAATTTTACGAGTTTATTCTAGTAGACACAAATTTCAACACAGCTTCATATCCAC
AATACAAGATGTTAGTCAAAAATCTCAAAATTAAATGGTGGGATAAATACAATTTCCAGCATGCCACCATCAAACATATGAAAGAGTGGTTCGCAGAGAACGGCTATCTT
CAAGATATCGATCAGAAAAAGAACGCAGAGTTCCTGAACGATAAATCAAAACTTTTAGCAGCACTGGCACAGGCAACAACTGATGCCGATTTTCAAAGATTACTATCAAC
GGCAGTAAATGCCTCTACAAGCTCAAAATCAGCGTCTTCCTCCATACAAGAAGATGACGAATTGGCAAGTCCGGAATACGATCTAAATGATCCGTTCCTCGACTCACAGC
CCATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGC
AATGGATTTTGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGGCATACGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTG
TCCGTCCTTCTGGCGGAATAACCCAAATGAGGCCTCCTGCCTCTCCTTTGTCAAAATTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCGTTGCACCAGAAAAA
CGGTTCATACCAAGGCCCGAGATCAAAACTTACTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTATCGATGAGACAGTTTC
AAGAATTTTCCCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGGAAATTTTACGAGTTTATTCTAGTAGACACAAATTTCAACACAGCTTCATATCCAC
AATACAAGATGTTAGTCAAAAATCTCAAAATTAAATGGTGGGATAAATACAATTTCCAGCATGCCACCATCAAACATATGAAAGAGTGGTTCGCAGAGAACGGCTATCTT
CAAGATATCGATCAGAAAAAGAACGCAGAGTTCCTGAACGATAAATCAAAACTTTTAGCAGCACTGGCACAGGCAACAACTGATGCCGATTTTCAAAGATTACTATCAAC
GGCAGTAAATGCCTCTACAAGCTCAAAATCAGCGTCTTCCTCCATACAAGAAGATGACGAATTGGCAAGTCCGGAATACGATCTAAATGATCCGTTCCTCGACTCACAGC
CCATGTGA
Protein sequenceShow/hide protein sequence
MSSVRGRGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTPPTTYSQAVAPEK
RFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSRIFPEGFNFLPEDLRKTRKFYEFILVDTNFNTASYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYL
QDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSASSSIQEDDELASPEYDLNDPFLDSQPM