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PI0027959 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027959
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionDynein light chain
Genome locationchr01:27716744..27717998
RNA-Seq ExpressionPI0027959
SyntenyPI0027959
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008462164.1 PREDICTED: dynein light chain LC6, flagellar outer arm-like [Cucumis melo]9.9e-48100Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
        MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP

XP_011659570.1 dynein light chain LC6, flagellar outer arm [Cucumis sativus]2.9e-4798.96Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
        MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS P
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP

XP_022964212.1 dynein light chain LC6, flagellar outer arm-like isoform X1 [Cucurbita moschata]4.3e-4394.68Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS
        MLEGKA VQDTDMP KMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFD++YGSGWQCVVGSNFGCFFTHSKGSFIYFKL TLNFLIFKGVTSS
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS

XP_023513963.1 dynein light chain LC6, flagellar outer arm-like [Cucurbita pepo subsp. pepo]4.3e-4394.68Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS
        MLEGKA VQDTDMP KMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFD++YGSGWQCVVGSNFGCFFTHSKGSFIYFKL TLNFLIFKGVTSS
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS

XP_038897874.1 dynein light chain LC6, flagellar outer arm-like [Benincasa hispida]2.9e-4797.92Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
        MLEGKAL+QDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDN+YGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP

TrEMBL top hitse value%identityAlignment
A0A0A0K947 Dynein light chain1.4e-4798.96Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
        MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS P
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP

A0A1S3CGU5 Dynein light chain4.8e-48100Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
        MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP

A0A5A7UW48 Dynein light chain4.8e-48100Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
        MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP

A0A6J1HH84 Dynein light chain2.1e-4394.68Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS
        MLEGKA VQDTDMP KMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFD++YGSGWQCVVGSNFGCFFTHSKGSFIYFKL TLNFLIFKGVTSS
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS

A0A6J1KDK4 Dynein light chain2.1e-4394.68Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS
        MLEGKA VQDTDMP KMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFD++YGSGWQCVVGSNFGCFFTHSKGSFIYFKL TLNFLIFKGVTSS
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSS

SwissProt top hitse value%identityAlignment
O02414 Dynein light chain LC6, flagellar outer arm8.0e-1647.19Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        M E KA++++ DMP  MQ  A+D A++AL+ +++   K IAA+IKK+FD KY   W C+VG NFG + TH    FIYF L  +  L+FK
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK

P61285 Dynein light chain 1, cytoplasmic2.3e-1544.94Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        M + KA++++ DM  +MQ  +++ A++AL+ Y++   K IAAHIKK+FD KY   W C+VG NFG + TH    FIYF L  +  L+FK
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK

P63167 Dynein light chain 1, cytoplasmic2.3e-1544.94Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        M + KA++++ DM  +MQ  +++ A++AL+ Y++   K IAAHIKK+FD KY   W C+VG NFG + TH    FIYF L  +  L+FK
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK

Q22799 Dynein light chain 1, cytoplasmic1.4e-1546.07Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        M++ KA++++ DM   MQ  A+D A++AL+ Y++   K IAA+IKK+FD KY   W C+VG NFG + TH    FIYF L  +  L+FK
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK

Q24117 Dynein light chain 1, cytoplasmic2.3e-1546.07Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        M + KA++++ DM  +MQ  A+D A++AL+ Y++   K IAA+IKK+FD KY   W C+VG NFG + TH    FIYF L  +  L+FK
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK

Arabidopsis top hitse value%identityAlignment
AT1G52240.1 RHO guanyl-nucleotide exchange factor 113.4e-2277.97Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCV
        MLEGKA+V+D+DMP KMQ+QAM  AS+ALDL+DVFDCKSIA HIKK+FD +YGSGWQCV
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCV

AT1G52240.2 RHO guanyl-nucleotide exchange factor 114.8e-4079.57Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTS
        MLEGKA+V+D+DMP KMQ+QAM  AS+ALDL+DVFDCKSIA HIKK+FD +YGSGWQCVVGSNFGCFFTHSKG+FIYF+LETL FLIFKG ++
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTS

AT3G16120.1 Dynein light chain type 1 family protein1.7e-3778.26Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVT
        MLEGKA V++TDMP KMQ+QAM  AS++LDL+DVFD  SIAAHIKK+FD +YGSGWQCVVG+NFGCFFTHSKG+FIYF L TLNFLIFKG T
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVT

AT4G27360.1 Dynein light chain type 1 family protein3.1e-2355.56Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
        MLEGKA++ DTDM   M+  A+  ASKALD +DV +   IA  IKK+FD  YGSGWQC+VG++FG F TH  G FI+F + +L  L+FKG
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG

AT5G20110.1 Dynein light chain type 1 family protein9.7e-1750Show/hide
Query:  DMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        DMPG MQ  A   A   LD  + F  K +A ++KK+FD  YG  W C+VGS+FG F THS G FIYF ++ L  L+FK
Subjt:  DMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAAGGTAAAGCTTTGGTACAGGATACAGATATGCCTGGCAAGATGCAGATCCAAGCCATGGACGCTGCTTCTAAAGCTCTGGATCTCTATGATGTTTTTGACTG
CAAATCCATTGCTGCCCACATAAAAAAGGACTTCGACAACAAATATGGAAGCGGATGGCAATGTGTGGTTGGTTCAAATTTCGGTTGTTTCTTCACCCACTCCAAGGGGT
CTTTCATCTACTTCAAACTGGAGACCCTCAACTTTCTCATCTTCAAAGGGGTGACTTCTTCGGCCCCATGA
mRNA sequenceShow/hide mRNA sequence
GAAAAACTTGGCTTCATTATTGGCCTCAGCACCTTTATCCTTTACCCATAATTATCTTTAGCGCAGGGAAAAGGGAAAGTAAGAGATAGAGAGAGAAAAAAAAGATTTTT
CATTAATAGAATATTGTTAAAAGTCCTTAAAGTGGGGAGAGAAAATGACAGGAAAATAATATTTATCGGAATATGTACCAGCTTAAAACTTGAATTTCTAAAGATTCCAT
CACATTTGGAAGAGGGGCTTCCAGAGTCTTTCCTTGTATAAAATCATCATCCATTTACTTCCTTCTTCGTGTTTCTTTGTTCGATTATGCCCTTGGAAGAAGAAACACTT
GAGTTTGGGATAAACTTTTCTGGGTTTTGAAGATAAGACTCAAAAGAGATCGCCGAGAGCATCCCTACCAGTTCTCTCTTTTCAGCAAAGGGGAAAGGATGTTGGAAGGT
AAAGCTTTGGTACAGGATACAGATATGCCTGGCAAGATGCAGATCCAAGCCATGGACGCTGCTTCTAAAGCTCTGGATCTCTATGATGTTTTTGACTGCAAATCCATTGC
TGCCCACATAAAAAAGGACTTCGACAACAAATATGGAAGCGGATGGCAATGTGTGGTTGGTTCAAATTTCGGTTGTTTCTTCACCCACTCCAAGGGGTCTTTCATCTACT
TCAAACTGGAGACCCTCAACTTTCTCATCTTCAAAGGGGTGACTTCTTCGGCCCCATGATTTTTAGTTGTGTTTTCTCTTTATTTGAATCTCTAGAGAGTTTGAGAAGCA
GAAACAAAAAAGGAAAGGCTTTCTTTTTCCTTTCTTGTGGCTACGTCAATTCGATTGAAAGGGTAAGGTCGAATTGAAGAAGCGTAAGGGAGATGGTAGGAAATGTACAA
ATTGACATTGTGGAATTGTTTGGATGTTTATGTTCAAAAAGCTTTTAATGCTTTTGTGGGTATACTATGTAAATATTGAAATCATGGGGAGACGGTTCTTAATCCTTTTC
ACGTATTGTCGTTGCCCCTTTGCTTCGATTTCTATTTTCTGCAAAGATTGGCTAATTATTGGATAAAGAAAATCAATTACAG
Protein sequenceShow/hide protein sequence
MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTSSAP