; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0027966 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027966
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr09:13013929..13017389
RNA-Seq ExpressionPI0027966
SyntenyPI0027966
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031967.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.7e-9772.62Show/hide
Query:  HPNFERVITLYFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVKCGVC
        H  F   +  YFY GLL++DRNTVDAAAGGALA+K P EARELISRMA+NSQ FGNRASEL+NSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KC VC
Subjt:  HPNFERVITLYFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVKCGVC

Query:  GLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTNAISKLEGKGK
        GLVGHPNDKCP+++EE N+++KYDP+SNTYNTGWRDNP LRWGNDNQ+  QA ++S+NQ TNL+D++KALATNT+SFQ EMKQQ++QLT  ISK++GKGK
Subjt:  GLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTNAISKLEGKGK

Query:  LPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKSETSTSPSSLKGTRN
        LPAQP+HANVS ISLRSGKIL+TPS+ E+KVTS P  L  KNE KEEK ET+ S S+ K  ++
Subjt:  LPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKSETSTSPSSLKGTRN

KAA0032798.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.6e-9574.7Show/hide
Query:  YFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVKCGVCGLVGHPNDKC
        YFYSGLL+ DRN VDAAA GALADKTPIEARELI RMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVG+PNDKC
Subjt:  YFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVKCGVCGLVGHPNDKC

Query:  PDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTNAISKLEGKGKLPAQPDHANV
        P ++E+ N++R+YDPH NTYN GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLED++ ALATNT+SFQ EMKQQ++QLT  +SK++GKGKLPAQPDH NV
Subjt:  PDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTNAISKLEGKGKLPAQPDHANV

Query:  SAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKSETSTSPSSLKGTRN
        SAISLRSGKIL+TP++ E+KVTS    L  KN+ KEEK ET+   S+ K  ++
Subjt:  SAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKSETSTSPSSLKGTRN

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.7e-9674.21Show/hide
Query:  YFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVKCGVCGLVGHPNDKC
        Y Y  LL++DRNTVDA AGGALADK P EARELIS+MAENSQ+F NRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKC
Subjt:  YFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVKCGVCGLVGHPNDKC

Query:  PDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTNAISKLEGKGKLPAQPDHANV
        P+++E+ N++RKYDPH NTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SFQ EMKQQ++QLT AISK++GKGKL AQ ++ANV
Subjt:  PDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTNAISKLEGKGKLPAQPDHANV

Query:  SAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKSETSTSPSSLKGTR
        SA+SLRSGKIL+TP++ E+K TS P  L  KNE KEEK ET+ SP + K  +
Subjt:  SAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKSETSTSPSSLKGTR

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.6e-9573.52Show/hide
Query:  RSVEHAWNFTISHPNFERVITLYFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ
        RS E   +F   H +   +I  YF+SGLL+ DRNT+D  AGGALADKTP EARELISRM ENSQ+FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ
Subjt:  RSVEHAWNFTISHPNFERVITLYFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ

Query:  GGSVKVVKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G   KV KCGVCGLVGHPNDKC  ++E+ N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQGTNLED++KAL TNT+SFQ EMKQQ++QL
Subjt:  GGSVKVVKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVTSTP---DLLE
        T AISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP+++EK   TP   +LLE
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVTSTP---DLLE

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.0e-9375.83Show/hide
Query:  RNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVKCGVCGLVGHPNDKCPDLVEEANVI
        RNT+D AAGGALADKTP EARELISRMAENS++FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++
Subjt:  RNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVKCGVCGLVGHPNDKCPDLVEEANVI

Query:  RKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKI
        R+YDPHSNTYN+GWRDN NLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SFQ +MKQQ++QLT AISK++GKGKLPAQPDHANVSAISLRSGKI
Subjt:  RKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKI

Query:  LETPSS-EEKVTSTPDLLEDKNEKKEEKSETSTSPSSLKG
        L+TP++ E+K+TS P  L  KNE KEEK ++    ++  G
Subjt:  LETPSS-EEKVTSTPDLLEDKNEKKEEKSETSTSPSSLKG

TrEMBL top hitse value%identityAlignment
A0A5A7SQH8 Retrotransposon gag protein8.0e-9674.7Show/hide
Query:  YFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVKCGVCGLVGHPNDKC
        YFYSGLL+ DRN VDAAA GALADKTPIEARELI RMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVG+PNDKC
Subjt:  YFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVKCGVCGLVGHPNDKC

Query:  PDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTNAISKLEGKGKLPAQPDHANV
        P ++E+ N++R+YDPH NTYN GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLED++ ALATNT+SFQ EMKQQ++QLT  +SK++GKGKLPAQPDH NV
Subjt:  PDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTNAISKLEGKGKLPAQPDHANV

Query:  SAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKSETSTSPSSLKGTRN
        SAISLRSGKIL+TP++ E+KVTS    L  KN+ KEEK ET+   S+ K  ++
Subjt:  SAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKSETSTSPSSLKGTRN

A0A5A7SRF5 Retrotransposon gag protein3.2e-9772.62Show/hide
Query:  HPNFERVITLYFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVKCGVC
        H  F   +  YFY GLL++DRNTVDAAAGGALA+K P EARELISRMA+NSQ FGNRASEL+NSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KC VC
Subjt:  HPNFERVITLYFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVKCGVC

Query:  GLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTNAISKLEGKGK
        GLVGHPNDKCP+++EE N+++KYDP+SNTYNTGWRDNP LRWGNDNQ+  QA ++S+NQ TNL+D++KALATNT+SFQ EMKQQ++QLT  ISK++GKGK
Subjt:  GLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTNAISKLEGKGK

Query:  LPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKSETSTSPSSLKGTRN
        LPAQP+HANVS ISLRSGKIL+TPS+ E+KVTS P  L  KNE KEEK ET+ S S+ K  ++
Subjt:  LPAQPDHANVSAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKSETSTSPSSLKGTRN

A0A5A7V0Q7 Retrotransposon gag protein8.0e-9673.52Show/hide
Query:  RSVEHAWNFTISHPNFERVITLYFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ
        RS E   +F   H +   +I  YF+SGLL+ DRNT+D  AGGALADKTP EARELISRM ENSQ+FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ
Subjt:  RSVEHAWNFTISHPNFERVITLYFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQ

Query:  GGSVKVVKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G   KV KCGVCGLVGHPNDKC  ++E+ N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQGTNLED++KAL TNT+SFQ EMKQQ++QL
Subjt:  GGSVKVVKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVTSTP---DLLE
        T AISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP+++EK   TP   +LLE
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPSSEEKVTSTP---DLLE

A0A5D3CB46 Retrotransposon gag protein9.8e-9475.83Show/hide
Query:  RNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVKCGVCGLVGHPNDKCPDLVEEANVI
        RNT+D AAGGALADKTP EARELISRMAENS++FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++
Subjt:  RNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVKCGVCGLVGHPNDKCPDLVEEANVI

Query:  RKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKI
        R+YDPHSNTYN+GWRDN NLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SFQ +MKQQ++QLT AISK++GKGKLPAQPDHANVSAISLRSGKI
Subjt:  RKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKI

Query:  LETPSS-EEKVTSTPDLLEDKNEKKEEKSETSTSPSSLKG
        L+TP++ E+K+TS P  L  KNE KEEK ++    ++  G
Subjt:  LETPSS-EEKVTSTPDLLEDKNEKKEEKSETSTSPSSLKG

A0A5D3CRR8 Retrotransposon gag protein4.7e-9674.21Show/hide
Query:  YFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVKCGVCGLVGHPNDKC
        Y Y  LL++DRNTVDA AGGALADK P EARELIS+MAENSQ+F NRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKC
Subjt:  YFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVKCGVCGLVGHPNDKC

Query:  PDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTNAISKLEGKGKLPAQPDHANV
        P+++E+ N++RKYDPH NTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SFQ EMKQQ++QLT AISK++GKGKL AQ ++ANV
Subjt:  PDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTNAISKLEGKGKLPAQPDHANV

Query:  SAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKSETSTSPSSLKGTR
        SA+SLRSGKIL+TP++ E+K TS P  L  KNE KEEK ET+ SP + K  +
Subjt:  SAISLRSGKILETPSS-EEKVTSTPDLLEDKNEKKEEKSETSTSPSSLKGTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTAGGTCAGTCGAACATGCTTGGAATTTTACCATTTCTCATCCGAATTTCGAAAGAGTCATTACTTTGTATTTTTATTCTGGACTACTAACCACGGATAGAAATAC
AGTAGATGCTGCAGCAGGTGGTGCTTTAGCTGACAAGACCCCTATTGAAGCTAGAGAGCTCATTTCAAGGATGGCTGAAAATTCACAGAATTTTGGCAACAGAGCATCCG
AGCTCGACAATTCATTAACAAAGGAGGTAAGTGAACTTAAATCACAAATGCTTAATATGACTACTTTACTAACCTCTTTTGTGCAAGGTGGATCTGTGAAAGTCGTTAAG
TGCGGGGTTTGCGGTCTAGTTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACATACAACACCGG
TTGGAGAGACAACCCTAATCTTAGATGGGGAAACGATAACCAAAGACCCGCGCAAGCAACTTCATCTTCAAACAATCAAGGTACTAATTTGGAAGACTTAGTTAAAGCTC
TTGCTACTAATACAATTTCTTTTCAGAATGAAATGAAACAGCAAATATCTCAACTAACAAATGCCATAAGCAAACTAGAAGGCAAAGGCAAGCTTCCAGCTCAGCCTGAT
CATGCCAACGTAAGTGCCATCTCGCTCAGAAGCGGTAAGATTCTGGAAACCCCTTCAAGCGAAGAAAAGGTAACTTCTACCCCTGACCTTCTAGAAGATAAAAATGAGAA
AAAGGAAGAAAAATCAGAAACAAGTACTTCACCATCTTCATTAAAAGGAACCAGGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTAGGTCAGTCGAACATGCTTGGAATTTTACCATTTCTCATCCGAATTTCGAAAGAGTCATTACTTTGTATTTTTATTCTGGACTACTAACCACGGATAGAAATAC
AGTAGATGCTGCAGCAGGTGGTGCTTTAGCTGACAAGACCCCTATTGAAGCTAGAGAGCTCATTTCAAGGATGGCTGAAAATTCACAGAATTTTGGCAACAGAGCATCCG
AGCTCGACAATTCATTAACAAAGGAGGTAAGTGAACTTAAATCACAAATGCTTAATATGACTACTTTACTAACCTCTTTTGTGCAAGGTGGATCTGTGAAAGTCGTTAAG
TGCGGGGTTTGCGGTCTAGTTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACATACAACACCGG
TTGGAGAGACAACCCTAATCTTAGATGGGGAAACGATAACCAAAGACCCGCGCAAGCAACTTCATCTTCAAACAATCAAGGTACTAATTTGGAAGACTTAGTTAAAGCTC
TTGCTACTAATACAATTTCTTTTCAGAATGAAATGAAACAGCAAATATCTCAACTAACAAATGCCATAAGCAAACTAGAAGGCAAAGGCAAGCTTCCAGCTCAGCCTGAT
CATGCCAACGTAAGTGCCATCTCGCTCAGAAGCGGTAAGATTCTGGAAACCCCTTCAAGCGAAGAAAAGGTAACTTCTACCCCTGACCTTCTAGAAGATAAAAATGAGAA
AAAGGAAGAAAAATCAGAAACAAGTACTTCACCATCTTCATTAAAAGGAACCAGGAATTGA
Protein sequenceShow/hide protein sequence
MPRSVEHAWNFTISHPNFERVITLYFYSGLLTTDRNTVDAAAGGALADKTPIEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVVK
CGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTNAISKLEGKGKLPAQPD
HANVSAISLRSGKILETPSSEEKVTSTPDLLEDKNEKKEEKSETSTSPSSLKGTRN