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PI0027979 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027979
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPentatricopeptide repeat-containing protein, chloroplastic
Genome locationchr04:14168480..14168893
RNA-Seq ExpressionPI0027979
SyntenyPI0027979
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5249867.1 pentatricopeptide repeat-containing protein [Salix suchowensis]2.5e-1250.54Show/hide
Query:  MYAKCRAIHMTRKLFEMINN---CM---TKKDYGLE-------ASNGSLRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWERA
        MYAKC  IH  RKLF+M      C     KKDYG+E       A    L   GR+ +AWDFI+ MPI  GITVYGA LGACKI K +   E+A
Subjt:  MYAKCRAIHMTRKLFEMINN---CM---TKKDYGLE-------ASNGSLRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWERA

KGN50529.1 hypothetical protein Csa_000167 [Cucumis sativus]1.6e-1154.32Show/hide
Query:  MYAKCRAIHMTRKLFEMINNCMTKKDYGLEASNGSLRCYG---RIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWE
        MYAKC  IHMT    E             E       CYG   RIKE WDFIENMPIGLGITVYGATLGAC I K + + E
Subjt:  MYAKCRAIHMTRKLFEMINNCMTKKDYGLEASNGSLRCYG---RIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWE

XP_004147126.2 pentatricopeptide repeat-containing protein At1g11290, chloroplastic [Cucumis sativus]2.0e-0960.94Show/hide
Query:  KKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWERA
        K+DYGLE S          L   GRIKEAWDFIENMPI  GITVYGA LGACKI K +   E+A
Subjt:  KKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWERA

XP_008445930.1 PREDICTED: pentatricopeptide repeat-containing protein At1g11290, chloroplastic [Cucumis melo]2.0e-0960.94Show/hide
Query:  KKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWERA
        K+DYGLE S          L   GRIKEAWDFIENMPI  GITVYGA LGACKI K +   E+A
Subjt:  KKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWERA

XP_023541274.1 pentatricopeptide repeat-containing protein At1g11290, chloroplastic [Cucurbita pepo subsp. pepo]7.6e-0962.07Show/hide
Query:  KKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKM
        K+DYGLE S          L   GRIKEAWDFIENMP+  GITVYGA LGACKI K +
Subjt:  KKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKM

TrEMBL top hitse value%identityAlignment
A0A0A0KNU8 Uncharacterized protein7.9e-1254.32Show/hide
Query:  MYAKCRAIHMTRKLFEMINNCMTKKDYGLEASNGSLRCYG---RIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWE
        MYAKC  IHMT    E             E       CYG   RIKE WDFIENMPIGLGITVYGATLGAC I K + + E
Subjt:  MYAKCRAIHMTRKLFEMINNCMTKKDYGLEASNGSLRCYG---RIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWE

A0A0A0KPP6 DYW_deaminase domain-containing protein9.6e-1060.94Show/hide
Query:  KKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWERA
        K+DYGLE S          L   GRIKEAWDFIENMPI  GITVYGA LGACKI K +   E+A
Subjt:  KKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWERA

A0A1S3BEJ2 pentatricopeptide repeat-containing protein At1g11290, chloroplastic9.6e-1060.94Show/hide
Query:  KKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWERA
        K+DYGLE S          L   GRIKEAWDFIENMPI  GITVYGA LGACKI K +   E+A
Subjt:  KKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWERA

A0A5D3CX30 Pentatricopeptide repeat-containing protein9.6e-1060.94Show/hide
Query:  KKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWERA
        K+DYGLE S          L   GRIKEAWDFIENMPI  GITVYGA LGACKI K +   E+A
Subjt:  KKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWERA

A0A6J1CD18 pentatricopeptide repeat-containing protein At1g11290, chloroplastic isoform X11.4e-0856.25Show/hide
Query:  KKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWERA
        ++DYGLE S          L   GRI EAWDFIENMP+  GITVYGA LGACKI K +   E+A
Subjt:  KKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWERA

SwissProt top hitse value%identityAlignment
Q3E6Q1 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic9.6e-0742.42Show/hide
Query:  MTKKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWERA
        M K++Y +E S          L   GR+ EAWDFI  MP+   + VYGA LGAC+I K +   E+A
Subjt:  MTKKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWERA

Q9CAY1 Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial2.0e-0441.38Show/hide
Query:  KKDYGLEASNGSLRCY-------GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKM
        K++Y LE       C        GR+ EA +FIE+MP+     V+GA LGACKI K +
Subjt:  KKDYGLEASNGSLRCY-------GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKM

Arabidopsis top hitse value%identityAlignment
AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein6.8e-0842.42Show/hide
Query:  MTKKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWERA
        M K++Y +E S          L   GR+ EAWDFI  MP+   + VYGA LGAC+I K +   E+A
Subjt:  MTKKDYGLEASNGS-------LRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWERA

AT1G74600.1 pentatricopeptide (PPR) repeat-containing protein1.2e-0443.4Show/hide
Query:  KDYGLEASNGSLRCY-------GRIKEAWDFIENMPIGLGITVYGATLGACKI
        KDYG+E  N    C        GR++EA  FI NM I     V+G  L ACKI
Subjt:  KDYGLEASNGSLRCY-------GRIKEAWDFIENMPIGLGITVYGATLGACKI

AT3G11460.1 Pentatricopeptide repeat (PPR) superfamily protein1.4e-0541.38Show/hide
Query:  KKDYGLEASNGSLRCY-------GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKM
        K++Y LE       C        GR+ EA +FIE+MP+     V+GA LGACKI K +
Subjt:  KKDYGLEASNGSLRCY-------GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKM

AT4G01030.1 pentatricopeptide (PPR) repeat-containing protein6.0e-0438.64Show/hide
Query:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKM----LNWER
        G + EAWDFI+ M +    T++GA L +CKI + +    + W+R
Subjt:  GRIKEAWDFIENMPIGLGITVYGATLGACKIKKKM----LNWER


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGCAAAATGTAGAGCGATTCATATGACAAGAAAGCTTTTTGAGATGATCAATAACTGCATGACGAAAAAAGACTATGGATTGGAGGCTTCAAATGGATCACTACG
GTGCTATGGCAGGATCAAAGAAGCCTGGGATTTTATTGAAAACATGCCTATTGGTCTAGGGATTACTGTATATGGTGCCACGTTGGGTGCTTGTAAAATTAAAAAAAAAA
TGTTGAATTGGGAGAGAGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTATGCAAAATGTAGAGCGATTCATATGACAAGAAAGCTTTTTGAGATGATCAATAACTGCATGACGAAAAAAGACTATGGATTGGAGGCTTCAAATGGATCACTACG
GTGCTATGGCAGGATCAAAGAAGCCTGGGATTTTATTGAAAACATGCCTATTGGTCTAGGGATTACTGTATATGGTGCCACGTTGGGTGCTTGTAAAATTAAAAAAAAAA
TGTTGAATTGGGAGAGAGCCTAA
Protein sequenceShow/hide protein sequence
MYAKCRAIHMTRKLFEMINNCMTKKDYGLEASNGSLRCYGRIKEAWDFIENMPIGLGITVYGATLGACKIKKKMLNWERA