CuGenDBv2

Gene ID	PI0028000
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Unknown protein
Genome location	chr05:8896945..8898259
RNA-Seq Expression	PI0028000
Synteny	PI0028000
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0049709.1 hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa]

1.8e-46

62.18

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Query:  RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTHPQHTLRPL
        RGR +STSSKG+RPSSS N  PSPMSADQYAMD GFTTVTRS++RSS IRI SPTESSTPP+PS NL+RPSGG+ QMR P SP SN +SST P       
Subjt:  RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTHPQHTLRPL

Query:  HQKNACHHQTYERVVPRERLSSRYRSEKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNAYTSSKSASSSIQEDDELASPEYDLNDPFLDS
                 TY + V  ++                +SKLLAALAQATTDADFQRLLST VNA +SSKS SSSIQED+E    EYDL+DP+LDS
Subjt:  HQKNACHHQTYERVVPRERLSSRYRSEKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNAYTSSKSASSSIQEDDELASPEYDLNDPFLDS

KAA0053156.1 hypothetical protein E6C27_scaffold1248G00100 [Cucumis melo var. makuwa]

4.0e-30

49.51

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Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTH
        MSS +G  RGR +STSSKG+RPSSS N APSPMS DQYAM  GFTT+T+SK+RSS IRI SPTES TPPRP ANL+RPSG + QMR P SPLSN ESST 
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTH

Query:  PQHTLRPLHQKNACHHQTYERVVPRERLSSRYRSEKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNAYTSSKSASSSIQEDDELASPEYDLNDPFLD
        P    + +           +R VPR  + S ++                 +     +  +Q                SSSIQED+E   PEYDL+D FLD
Subjt:  PQHTLRPLHQKNACHHQTYERVVPRERLSSRYRSEKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNAYTSSKSASSSIQEDDELASPEYDLNDPFLD

Query:  SQPM
        SQPM
Subjt:  SQPM

KAA0066384.1 hypothetical protein E6C27_scaffold21G004590 [Cucumis melo var. makuwa]

6.5e-33

51.74

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Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTH
        MSS +G  RGR +STSSKG+  SSS N APSP  ADQYAM+ GFTTVTRS++RSS+IRI S TES+TPPRPS NL+ PS G+ QMRPPASP SN ESST 
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTH

Query:  PQHTLRPLHQKNACHHQTYERVVPRERLSSRYRSEKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNAYTSSKSASSSIQEDDELASPEYDLNDPFLD
        P  T       +       +R VPR  + S ++              L  +     + ++Q      +NA +SSKS SSSIQED+E   PEYDL+DPFLD
Subjt:  PQHTLRPLHQKNACHHQTYERVVPRERLSSRYRSEKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNAYTSSKSASSSIQEDDELASPEYDLNDPFLD

Query:  S
        S
Subjt:  S

TYJ98361.1 hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]

7.7e-42

53.74

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Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTH
        MSS +G  RGR +STSSKG+ PSSS N APSPMS DQYAMD G+TTV +S+++SS I I SP ESSTPPRPS NL+ P G + QMR  ASP SN ESST 
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTH

Query:  PQHTLRPLHQKNACHHQTYERVVPRERLSSRYR------------------------SEKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNAYTSSKS
        P    + +           ++ VPR  + S ++                          KNA+FLNDK K LAAL QAT DADFQRLLSTAVN  +SSK 
Subjt:  PQHTLRPLHQKNACHHQTYERVVPRERLSSRYR------------------------SEKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNAYTSSKS

Query:  ASSSIQEDDELASPEYDLNDPFLDSQP
        A S IQED+E    EYDL+DPFLDSQP
Subjt:  ASSSIQEDDELASPEYDLNDPFLDSQP

TYK02422.1 hypothetical protein E5676_scaffold1738G00210 [Cucumis melo var. makuwa]

1.4e-27

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Query:  MSADQYAMDFGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTHPQHTLRPLHQKNACHHQTYERVVPRERLSSRY
        MSADQYAMD GFTTVTRS++RSSDI+I SPTESSTPPRPSANL+RPS G  QMRPPASP SN ESST P                TY + V         
Subjt:  MSADQYAMDFGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTHPQHTLRPLHQKNACHHQTYERVVPRERLSSRY

Query:  RSEKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNAYTSSKSASSSIQEDDELASPEYDLNDPFLDSQPM
                              T +  F  ++       +SS+S+SSSIQED+E   PEYDL+DPFLDS+PM
Subjt:  RSEKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNAYTSSKSASSSIQEDDELASPEYDLNDPFLDSQPM

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U8A0 Uncharacterized protein

8.6e-47

62.18

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Query:  RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTHPQHTLRPL
        RGR +STSSKG+RPSSS N  PSPMSADQYAMD GFTTVTRS++RSS IRI SPTESSTPP+PS NL+RPSGG+ QMR P SP SN +SST P       
Subjt:  RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTHPQHTLRPL

Query:  HQKNACHHQTYERVVPRERLSSRYRSEKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNAYTSSKSASSSIQEDDELASPEYDLNDPFLDS
                 TY + V  ++                +SKLLAALAQATTDADFQRLLST VNA +SSKS SSSIQED+E    EYDL+DP+LDS
Subjt:  HQKNACHHQTYERVVPRERLSSRYRSEKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNAYTSSKSASSSIQEDDELASPEYDLNDPFLDS

A0A5A7UFZ9 Uncharacterized protein

1.9e-30

49.51

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Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTH
        MSS +G  RGR +STSSKG+RPSSS N APSPMS DQYAM  GFTT+T+SK+RSS IRI SPTES TPPRP ANL+RPSG + QMR P SPLSN ESST 
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTH

Query:  PQHTLRPLHQKNACHHQTYERVVPRERLSSRYRSEKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNAYTSSKSASSSIQEDDELASPEYDLNDPFLD
        P    + +           +R VPR  + S ++                 +     +  +Q                SSSIQED+E   PEYDL+D FLD
Subjt:  PQHTLRPLHQKNACHHQTYERVVPRERLSSRYRSEKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNAYTSSKSASSSIQEDDELASPEYDLNDPFLD

Query:  SQPM
        SQPM
Subjt:  SQPM

A0A5D3BI61 Uncharacterized protein

3.7e-42

53.74

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Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTH
        MSS +G  RGR +STSSKG+ PSSS N APSPMS DQYAMD G+TTV +S+++SS I I SP ESSTPPRPS NL+ P G + QMR  ASP SN ESST 
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTH

Query:  PQHTLRPLHQKNACHHQTYERVVPRERLSSRYR------------------------SEKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNAYTSSKS
        P    + +           ++ VPR  + S ++                          KNA+FLNDK K LAAL QAT DADFQRLLSTAVN  +SSK 
Subjt:  PQHTLRPLHQKNACHHQTYERVVPRERLSSRYR------------------------SEKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNAYTSSKS

Query:  ASSSIQEDDELASPEYDLNDPFLDSQP
        A S IQED+E    EYDL+DPFLDSQP
Subjt:  ASSSIQEDDELASPEYDLNDPFLDSQP

A0A5D3BPD3 Uncharacterized protein

3.2e-33

51.74

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Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTH
        MSS +G  RGR +STSSKG+  SSS N APSP  ADQYAM+ GFTTVTRS++RSS+IRI S TES+TPPRPS NL+ PS G+ QMRPPASP SN ESST 
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTH

Query:  PQHTLRPLHQKNACHHQTYERVVPRERLSSRYRSEKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNAYTSSKSASSSIQEDDELASPEYDLNDPFLD
        P  T       +       +R VPR  + S ++              L  +     + ++Q      +NA +SSKS SSSIQED+E   PEYDL+DPFLD
Subjt:  PQHTLRPLHQKNACHHQTYERVVPRERLSSRYRSEKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNAYTSSKSASSSIQEDDELASPEYDLNDPFLD

Query:  S
        S
Subjt:  S

A0A5D3BUE2 Uncharacterized protein

6.8e-28

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Query:  MSADQYAMDFGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTHPQHTLRPLHQKNACHHQTYERVVPRERLSSRY
        MSADQYAMD GFTTVTRS++RSSDI+I SPTESSTPPRPSANL+RPS G  QMRPPASP SN ESST P                TY + V         
Subjt:  MSADQYAMDFGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTHPQHTLRPLHQKNACHHQTYERVVPRERLSSRY

Query:  RSEKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNAYTSSKSASSSIQEDDELASPEYDLNDPFLDSQPM
                              T +  F  ++       +SS+S+SSSIQED+E   PEYDL+DPFLDS+PM
Subjt:  RSEKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNAYTSSKSASSSIQEDDELASPEYDLNDPFLDSQPM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGC
AATGGATTTTGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGACATACGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTG
TCCGTCCTTCTGGCGGAATAACCCAAATGAGGCCTCCTGCCTCTCCTTTGTCAAATTTGGAGTCATCAACTCACCCACAACATACTCTCAGGCCGTTGCACCAGAAAAAC
GCATGCCACCATCAAACATATGAAAGAGTGGTTCCCAGAGAACGGCTATCTTCAAGATATCGATCAGAAAAGAACGCAGAGTTCCTGAACGATAAATCAAAACTTTTAGC
AGCACTGGCACAGGCAACAACTGATGCCGATTTTCAAAGATTACTATCAACGGCAGTAAATGCCTATACAAGCTCAAAATCAGCGTCTTCCTCCATACAGGAAGATGACG
AATTGGCAAGTCCGGAATACGATCTAAATGATCCGTTCCTCGACTCACAGCCCATGTGA

mRNA sequence

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Protein sequence

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MSSVRGRGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSDIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTHPQHTLRPLHQKN
ACHHQTYERVVPRERLSSRYRSEKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNAYTSSKSASSSIQEDDELASPEYDLNDPFLDSQPM

PI0028000 (gene) of Melon (PI 482460) v1 genome