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PI0028053 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028053
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr12:18455516..18456310
RNA-Seq ExpressionPI0028053
SyntenyPI0028053
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ERM93404.1 hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda]1.2e-3842.13Show/hide
Query:  LNGVYMAHDLDRPIRSYAAPNLYNFNPRITYPVFGENARFEIKHVMLQMIQNVGQFGGHPGEDPYEHIRSFYSICASFHMPGISLEELRFALFLLTLRDE
        +N + +A D  R IR YAAP     NP I  P   +  +FE+K VM QM+Q VGQF G P EDP+ H+RSF  +  SF + G+S E LR  LF  +LRD 
Subjt:  LNGVYMAHDLDRPIRSYAAPNLYNFNPRITYPVFGENARFEIKHVMLQMIQNVGQFGGHPGEDPYEHIRSFYSICASFHMPGISLEELRFALFLLTLRDE

Query:  AK--------------------------------KRRKELMSFQQKDRENLHDAWSRFKRLVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGSML
        A+                                K R E+MSFQQ + E+  DAW RFK L++ CPH+GIP CI ME FY GLN A++   DA   G++L
Subjt:  AK--------------------------------KRRKELMSFQQKDRENLHDAWSRFKRLVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGSML

Query:  KSSYNQIKATLDTMASNNEEWDEDDFSNRRGGRSR
          SYN+    L+T+ASNN +W     SN R   SR
Subjt:  KSSYNQIKATLDTMASNNEEWDEDDFSNRRGGRSR

WP_217833177.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]2.0e-4944.4Show/hide
Query:  NRNAPPSHAAPELNGVYMAHDLDRPIRSYAAPNLYNFNPRITYPVFGENARFEIKHVMLQMIQNVGQFGGHPGEDPYEHIRSFYSICASFHMPGISLEEL
        N NA   HA  + N + +AHD +RP+R YA+PNLYNF P I  P F  N RFE+K VMLQM+Q  GQFGG  GEDP+ H++SF  IC++F M G+  + +
Subjt:  NRNAPPSHAAPELNGVYMAHDLDRPIRSYAAPNLYNFNPRITYPVFGENARFEIKHVMLQMIQNVGQFGGHPGEDPYEHIRSFYSICASFHMPGISLEEL

Query:  RFALFLLTLRDEAK--------------------------------KRRKELMSFQQKDRENLHDAWSRFKRLVKACPHNGIPECILMEVFYFGLNKATQ
        R  LF  +LRDEA+                                KRR+++++F+QKD E   +AW+RFKRLV+ CPHNGIP C+ ME+FY GLNK +Q
Subjt:  RFALFLLTLRDEAK--------------------------------KRRKELMSFQQKDRENLHDAWSRFKRLVKACPHNGIPECILMEVFYFGLNKATQ

Query:  QTADAVFVGSMLKSSYNQIKATLDTMASNNEE
          ADA   G ++  +Y Q K  LD ++ N  +
Subjt:  QTADAVFVGSMLKSSYNQIKATLDTMASNNEE

XP_030497803.1 uncharacterized protein LOC115713460 [Cannabis sativa]5.4e-3942.79Show/hide
Query:  ELNGVYMAHDLDRPIRSYAAPNLYNFNPRITYPVFGENARFEIKHVMLQMIQNVGQFGGHPGEDPYEHIRSFYSICASFHMPGISLEELRFALFLLTLRD
        E N + +A D  R IR YAAP     NP I  P   +   FE+K VM QM+Q VGQFGG P EDP+ HIRSF  +  SF + G+S E LR  LF  +LRD
Subjt:  ELNGVYMAHDLDRPIRSYAAPNLYNFNPRITYPVFGENARFEIKHVMLQMIQNVGQFGGHPGEDPYEHIRSFYSICASFHMPGISLEELRFALFLLTLRD

Query:  EAK--------------------------------KRRKELMSFQQKDRENLHDAWSRFKRLVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGSM
         A+                                K R E+MSFQQ + E   DAW RFK L++ CPH+GIP CI +E FY GLN A++   DA   G++
Subjt:  EAK--------------------------------KRRKELMSFQQKDRENLHDAWSRFKRLVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGSM

Query:  LKSSYNQIKATLDTMASNNEEW
        L  SYN+    L+ +ASNN +W
Subjt:  LKSSYNQIKATLDTMASNNEEW

XP_030508936.1 uncharacterized protein LOC115723589 [Cannabis sativa]1.2e-3842.79Show/hide
Query:  ELNGVYMAHDLDRPIRSYAAPNLYNFNPRITYPVFGENARFEIKHVMLQMIQNVGQFGGHPGEDPYEHIRSFYSICASFHMPGISLEELRFALFLLTLRD
        E N + +A D  R IR YAAP     NP I  P   +   FE+K VM QM+Q VGQFGG P EDP+ HIRSF  +  SF + G+S E LR  LF  +LRD
Subjt:  ELNGVYMAHDLDRPIRSYAAPNLYNFNPRITYPVFGENARFEIKHVMLQMIQNVGQFGGHPGEDPYEHIRSFYSICASFHMPGISLEELRFALFLLTLRD

Query:  EAK--------------------------------KRRKELMSFQQKDRENLHDAWSRFKRLVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGSM
         A+                                K R E+MSFQQ + E   DAW RFK L++ CPH+GIP CI +E FY GLN A +   DA   G++
Subjt:  EAK--------------------------------KRRKELMSFQQKDRENLHDAWSRFKRLVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGSM

Query:  LKSSYNQIKATLDTMASNNEEW
        L  SYN+    L+ +ASNN +W
Subjt:  LKSSYNQIKATLDTMASNNEEW

XP_038887458.1 uncharacterized protein LOC120077591 [Benincasa hispida]2.5e-4440.7Show/hide
Query:  ENNNRNAPPSHAA---PELNGVYMAHDLDRPIRSYAAPNLYNFNPRITYPVFGENARFEIKHVMLQMIQNVGQFGGHPGEDPYEHIRSFYSICASFHMPG
        +NNN  AP  +     P  + V++A D + PIR+YAAPNLY+F+P I+ P+  ENARFEIK VM+QMIQN+ QF     E+P+ H+  F  +C++F +PG
Subjt:  ENNNRNAPPSHAA---PELNGVYMAHDLDRPIRSYAAPNLYNFNPRITYPVFGENARFEIKHVMLQMIQNVGQFGGHPGEDPYEHIRSFYSICASFHMPG

Query:  ISLEELRFALFLLTLRDEAK--------------------------------KRRKELMSFQQKDRENLHDAWSRFKRLVKACPHNGIPECILMEVFYFG
        I+   +R  LF  TLRD+AK                                +RRK +++F++ D E L  AW RF+RLVK CPH GI +C+LME+FY G
Subjt:  ISLEELRFALFLLTLRDEAK--------------------------------KRRKELMSFQQKDRENLHDAWSRFKRLVKACPHNGIPECILMEVFYFG

Query:  LNKATQQTADAVFVGSMLKSSYNQIKATLDTMASNNEEWDEDDFSNRRGGRSRSDEDI
        LN++TQ  ADA  V   +  +Y + K  LD ++ N ++W +D +  R   R R+D  I
Subjt:  LNKATQQTADAVFVGSMLKSSYNQIKATLDTMASNNEEWDEDDFSNRRGGRSRSDEDI

TrEMBL top hitse value%identityAlignment
A0A5A7V1F3 Retrotrans_gag domain-containing protein9.2e-3745.13Show/hide
Query:  PSHAAPELNGVYMAHDLDRPIRSYAAPNLYNFNPRITYPVFGENARFEIKHVMLQMIQNVGQFGGHPGEDPYEHIRSFYSICASFHMPGISLEELRFALF
        P + A  +   Y+AH+L RPIRSYA P+LY FNP I YP FGENA +E K    +   ++        ED  E     +        P I +        
Subjt:  PSHAAPELNGVYMAHDLDRPIRSYAAPNLYNFNPRITYPVFGENARFEIKHVMLQMIQNVGQFGGHPGEDPYEHIRSFYSICASFHMPGISLEELRFALF

Query:  LLTLRDEAKKRRKELMSFQQKDRENLHDAWSRFKRLVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGSMLKSSYNQIKATLDTMASNNEE
                 KRR++L+ F+Q+DR+NLHDAWS FKR+VKAC H+GI + +LME FYFGL+K T+Q+AD++F+G +L+SSYNQIKA LD+MA+N+++
Subjt:  LLTLRDEAKKRRKELMSFQQKDRENLHDAWSRFKRLVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGSMLKSSYNQIKATLDTMASNNEE

A0A5A7V2U7 Putative disease resistance RPP13-like protein 11.2e-3366.67Show/hide
Query:  NNRNAPPSHAAPELNGVYMAHDLDRPIRSYAAPNLYNFNPRITYPVFGENARFEIKHVMLQMIQNVGQFGGHPGEDPYEHIRSFYSICASFHMPGISLEE
        NN+  P + AA   N  Y+A D DRPIRSYA+PNLY+FNP I YP F EN RFEIK VMLQ+IQN GQF  HP +DP+++IR+FYSICASFHMPGIS+EE
Subjt:  NNRNAPPSHAAPELNGVYMAHDLDRPIRSYAAPNLYNFNPRITYPVFGENARFEIKHVMLQMIQNVGQFGGHPGEDPYEHIRSFYSICASFHMPGISLEE

Query:  LRFALFLL
        LRF  F L
Subjt:  LRFALFLL

A0A6J1EEI2 uncharacterized protein LOC1114333941.2e-3335.83Show/hide
Query:  NGVYMAHDLDRPIRSYAAPNLYNFNPRITYPVFGENARFEIKHVMLQMIQNVGQFGGHPGEDPYEHIRSFYSICASFHMPGISLEELRFALFLLTLRDEA
        N +++A D +R IR+YA P +   NP I  P   +   FE+K VM QM+Q +GQF G P EDP+ H++SF  +  SF    +  + +R +LF  +LRD A
Subjt:  NGVYMAHDLDRPIRSYAAPNLYNFNPRITYPVFGENARFEIKHVMLQMIQNVGQFGGHPGEDPYEHIRSFYSICASFHMPGISLEELRFALFLLTLRDEA

Query:  K--------------------------------KRRKELMSFQQKDRENLHDAWSRFKRLVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGSMLK
        K                                + R E++ FQQ + + L +AW RFK +++ CPH+G+P CI ME FY GLN AT+Q  DA   G++L 
Subjt:  K--------------------------------KRRKELMSFQQKDRENLHDAWSRFKRLVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGSMLK

Query:  SSYNQIKATLDTMASNNEEWDEDDFSNRRGGRSRSDEDID
         +YN+    L+ +ASNN +W   D  +  G ++R   ++D
Subjt:  SSYNQIKATLDTMASNNEEWDEDDFSNRRGGRSRSDEDID

A0A6J1H7E4 uncharacterized protein LOC1114611683.0e-3537.08Show/hide
Query:  NGVYMAHDLDRPIRSYAAPNLYNFNPRITYPVFGENARFEIKHVMLQMIQNVGQFGGHPGEDPYEHIRSFYSICASFHMPGISLEELRFALFLLTLRDEA
        N + +A D +R IR+YA P +   NP I  P   +   FE+K VM QM+Q +GQF G P EDP+ H++SF  +  SF   G+  + +R +LF  +LRD A
Subjt:  NGVYMAHDLDRPIRSYAAPNLYNFNPRITYPVFGENARFEIKHVMLQMIQNVGQFGGHPGEDPYEHIRSFYSICASFHMPGISLEELRFALFLLTLRDEA

Query:  K--------------------------------KRRKELMSFQQKDRENLHDAWSRFKRLVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGSMLK
        K                                + R E+++FQQ + E L +AW RFK +++ CPH+G+P CI ME FY GLN AT+Q  DA   G+ML 
Subjt:  K--------------------------------KRRKELMSFQQKDRENLHDAWSRFKRLVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGSMLK

Query:  SSYNQIKATLDTMASNNEEWDEDDFSNRRGGRSRSDEDID
         +YN+    L+ +ASNN +W   D  +  G ++R   ++D
Subjt:  SSYNQIKATLDTMASNNEEWDEDDFSNRRGGRSRSDEDID

U5CUI2 Retrotrans_gag domain-containing protein5.8e-3942.13Show/hide
Query:  LNGVYMAHDLDRPIRSYAAPNLYNFNPRITYPVFGENARFEIKHVMLQMIQNVGQFGGHPGEDPYEHIRSFYSICASFHMPGISLEELRFALFLLTLRDE
        +N + +A D  R IR YAAP     NP I  P   +  +FE+K VM QM+Q VGQF G P EDP+ H+RSF  +  SF + G+S E LR  LF  +LRD 
Subjt:  LNGVYMAHDLDRPIRSYAAPNLYNFNPRITYPVFGENARFEIKHVMLQMIQNVGQFGGHPGEDPYEHIRSFYSICASFHMPGISLEELRFALFLLTLRDE

Query:  AK--------------------------------KRRKELMSFQQKDRENLHDAWSRFKRLVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGSML
        A+                                K R E+MSFQQ + E+  DAW RFK L++ CPH+GIP CI ME FY GLN A++   DA   G++L
Subjt:  AK--------------------------------KRRKELMSFQQKDRENLHDAWSRFKRLVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGSML

Query:  KSSYNQIKATLDTMASNNEEWDEDDFSNRRGGRSR
          SYN+    L+T+ASNN +W     SN R   SR
Subjt:  KSSYNQIKATLDTMASNNEEWDEDDFSNRRGGRSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAATAACAGAAATGCCCCTCCGTCGCATGCTGCCCCAGAACTAAATGGCGTCTACATGGCACATGACTTGGATAGGCCGATTAGATCTTATGCGGCACCCAA
CCTCTACAACTTCAACCCAAGGATCACTTACCCTGTGTTCGGTGAAAATGCTAGGTTTGAAATCAAACATGTCATGCTTCAGATGATTCAGAACGTCGGACAATTCGGCG
GTCACCCTGGGGAGGATCCATACGAGCATATTAGGAGTTTTTACTCCATCTGCGCTTCCTTCCATATGCCAGGCATCTCACTTGAAGAATTGAGATTCGCTCTCTTCCTG
TTAACTCTGAGGGATGAGGCGAAGAAAAGAAGAAAGGAGCTTATGAGCTTCCAGCAGAAGGATAGAGAAAACCTACATGACGCATGGAGTAGGTTTAAGAGGTTGGTGAA
AGCATGCCCCCACAATGGCATTCCTGAATGCATATTGATGGAGGTTTTCTATTTTGGGCTGAACAAGGCTACACAGCAGACTGCTGATGCTGTGTTTGTAGGCAGTATGC
TAAAGAGCTCCTACAACCAGATTAAGGCGACACTGGATACAATGGCTAGCAACAATGAAGAATGGGATGAAGATGATTTCAGCAATCGCAGAGGAGGACGATCAAGAAGT
GATGAAGACATAGATAAGAGCGTCGTGGTGGCGTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAATAACAGAAATGCCCCTCCGTCGCATGCTGCCCCAGAACTAAATGGCGTCTACATGGCACATGACTTGGATAGGCCGATTAGATCTTATGCGGCACCCAA
CCTCTACAACTTCAACCCAAGGATCACTTACCCTGTGTTCGGTGAAAATGCTAGGTTTGAAATCAAACATGTCATGCTTCAGATGATTCAGAACGTCGGACAATTCGGCG
GTCACCCTGGGGAGGATCCATACGAGCATATTAGGAGTTTTTACTCCATCTGCGCTTCCTTCCATATGCCAGGCATCTCACTTGAAGAATTGAGATTCGCTCTCTTCCTG
TTAACTCTGAGGGATGAGGCGAAGAAAAGAAGAAAGGAGCTTATGAGCTTCCAGCAGAAGGATAGAGAAAACCTACATGACGCATGGAGTAGGTTTAAGAGGTTGGTGAA
AGCATGCCCCCACAATGGCATTCCTGAATGCATATTGATGGAGGTTTTCTATTTTGGGCTGAACAAGGCTACACAGCAGACTGCTGATGCTGTGTTTGTAGGCAGTATGC
TAAAGAGCTCCTACAACCAGATTAAGGCGACACTGGATACAATGGCTAGCAACAATGAAGAATGGGATGAAGATGATTTCAGCAATCGCAGAGGAGGACGATCAAGAAGT
GATGAAGACATAGATAAGAGCGTCGTGGTGGCGTTGTAA
Protein sequenceShow/hide protein sequence
MENNNRNAPPSHAAPELNGVYMAHDLDRPIRSYAAPNLYNFNPRITYPVFGENARFEIKHVMLQMIQNVGQFGGHPGEDPYEHIRSFYSICASFHMPGISLEELRFALFL
LTLRDEAKKRRKELMSFQQKDRENLHDAWSRFKRLVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGSMLKSSYNQIKATLDTMASNNEEWDEDDFSNRRGGRSRS
DEDIDKSVVVAL