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PI0028110 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028110
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr08:5566042..5572540
RNA-Seq ExpressionPI0028110
SyntenyPI0028110
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.2e-5867.26Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT A
Subjt:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKGKLPAQLDHANVSVISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK
        ISK++GKGKL AQ ++ANVS +SLRSGKIL+TP + E+K  S P+ L  +N+ KEE +E N S  +SK
Subjt:  ISKLEGKGKLPAQLDHANVSVISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.5e-5868.45Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT  
Subjt:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKGKLPAQLDHANVSVISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK
        ISK++GKGKL AQ DHANVSVISLRS KIL+TP + E+KV S P+ L  +N+ KEE  E N S S+SK
Subjt:  ISKLEGKGKLPAQLDHANVSVISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.5e-6069.05Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+GH N+KCP+++E+ N++R+YDPH NTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT A
Subjt:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKGKLPAQLDHANVSVISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK
        ISK++GKGKLPAQLDHANVS ISLRSGKIL+TP + E+KV S P+ L  +N+ KEE +E N S S+SK
Subjt:  ISKLEGKGKLPAQLDHANVSVISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]5.5e-5867.26Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT  
Subjt:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKGKLPAQLDHANVSVISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK
        ISK++GKGKLPAQ DH NVS ISLRSGKIL+TP + E+KV S  + L  +N+ KEE +E N+SSS+SK
Subjt:  ISKLEGKGKLPAQLDHANVSVISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]2.5e-5868.45Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT  
Subjt:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKGKLPAQLDHANVSVISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK
        ISK++GKGKL AQ DHANVSVISLRS KIL+TP + E+KV S P+ L  +N+ KEE  E N S S+SK
Subjt:  ISKLEGKGKLPAQLDHANVSVISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032912.7e-5867.26Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT  
Subjt:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKGKLPAQLDHANVSVISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK
        ISK++GKGKLPAQ DH NVS ISLRSGKIL+TP + E+KV S  + L  +N+ KEE +E N+SSS+SK
Subjt:  ISKLEGKGKLPAQLDHANVSVISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK

A0A1S4E3R2 uncharacterized protein LOC1079919101.2e-5868.45Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT  
Subjt:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKGKLPAQLDHANVSVISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK
        ISK++GKGKL AQ DHANVSVISLRS KIL+TP + E+KV S P+ L  +N+ KEE  E N S S+SK
Subjt:  ISKLEGKGKLPAQLDHANVSVISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK

A0A5A7VQ60 Retrotransposon gag protein2.2e-6069.05Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+GH N+KCP+++E+ N++R+YDPH NTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT A
Subjt:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKGKLPAQLDHANVSVISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK
        ISK++GKGKLPAQLDHANVS ISLRSGKIL+TP + E+KV S P+ L  +N+ KEE +E N S S+SK
Subjt:  ISKLEGKGKLPAQLDHANVSVISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK

A0A5D3CRR8 Retrotransposon gag protein1.6e-5867.26Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT A
Subjt:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKGKLPAQLDHANVSVISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK
        ISK++GKGKL AQ ++ANVS +SLRSGKIL+TP + E+K  S P+ L  +N+ KEE +E N S  +SK
Subjt:  ISKLEGKGKLPAQLDHANVSVISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK

A0A5D3DCG3 Retrotransposon gag protein1.2e-5868.45Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT  
Subjt:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKGKLPAQLDHANVSVISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK
        ISK++GKGKL AQ DHANVSVISLRS KIL+TP + E+KV S P+ L  +N+ KEE  E N S S+SK
Subjt:  ISKLEGKGKLPAQLDHANVSVISLRSGKILETPPS-EEKVPSIPILLVDENKKKEENLENNASSSSSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAA
CACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGATCCGCACAAGCAACTTCATCCTCAAACAATCAAGGTAGTAATTTGGAAG
ATTTGGTAAAAGCTCTTGCCACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACTAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTT
CCAGCTCAGCTCGATCATGCAAATGTAAGTGTCATCTCACTTAGAAGCGGTAAAATTCTGGAAACCCCTCCAAGTGAAGAAAAGGTACCATCTATCCCTATCCTTCTAGT
AGATGAAAATAAGAAAAAGGAAGAAAATTTAGAAAACAATGCCTCTTCTTCTTCTTCAAAAGAGCTTCGCGAAATACTTCATCTGCAGAAGTACACATTATCTTTGACGC
ACAACGCAAACATTCGTTCGCCAACTCACCGAATCAAGTTCAAAGCTCAAACGCATGCAACCTTCATCAGCTCGCAGAATGCATCAACTCACTTCTTCTGCTCACAACCT
TCAGTTCGCCTGGGATCGGTTATCATAACCGTCAAGCCCAAGCCCACGACCCAAGCCCAATGTAACAAAATAACCGCCAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAA
CACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGATCCGCACAAGCAACTTCATCCTCAAACAATCAAGGTAGTAATTTGGAAG
ATTTGGTAAAAGCTCTTGCCACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACTAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTT
CCAGCTCAGCTCGATCATGCAAATGTAAGTGTCATCTCACTTAGAAGCGGTAAAATTCTGGAAACCCCTCCAAGTGAAGAAAAGGTACCATCTATCCCTATCCTTCTAGT
AGATGAAAATAAGAAAAAGGAAGAAAATTTAGAAAACAATGCCTCTTCTTCTTCTTCAAAAGAGCTTCGCGAAATACTTCATCTGCAGAAGTACACATTATCTTTGACGC
ACAACGCAAACATTCGTTCGCCAACTCACCGAATCAAGTTCAAAGCTCAAACGCATGCAACCTTCATCAGCTCGCAGAATGCATCAACTCACTTCTTCTGCTCACAACCT
TCAGTTCGCCTGGGATCGGTTATCATAACCGTCAAGCCCAAGCCCACGACCCAAGCCCAATGTAACAAAATAACCGCCAAATAG
Protein sequenceShow/hide protein sequence
MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRSAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKL
PAQLDHANVSVISLRSGKILETPPSEEKVPSIPILLVDENKKKEENLENNASSSSSKELREILHLQKYTLSLTHNANIRSPTHRIKFKAQTHATFISSQNASTHFFCSQP
SVRLGSVIITVKPKPTTQAQCNKITAK