CuGenDBv2

Gene ID	PI0028116
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Unknown protein
Genome location	chr10:280560..282587
RNA-Seq Expression	PI0028116
Synteny	PI0028116
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0026217.1 hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa]

1.4e-33

78.1

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Query:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAV
        RGR +STSSKG+RLSSS N APSPMSADQYAMDLGFT VTRS++R SGI I  PTESSTPPRPSANL+RP G + QM+PPASP SN +SSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAV

Query:  APEKR
         P+KR
Subjt:  APEKR

KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]

4.1e-33

78.1

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Query:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAV
        RGR +STSSKG+R  SS N APSP+SADQYAMDLGFTTVTR  +RS GI I SPTESSTPPRPS NL+RPS G+ QMRPPASP SN ESSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAV

Query:  APEKR
         P+KR
Subjt:  APEKR

KAA0049709.1 hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa]

7.5e-35

75.45

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Query:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAV
        RGR +STSSKG+R SSS N  PSPMSADQYAMDLGFTTVTRS++RSS IRI SPTESSTPP+PS NL+RPSGG+ QMR P SP SN +SSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAV

Query:  APEKRGPVLS
         P+KR  +L+
Subjt:  APEKRGPVLS

KAA0053156.1 hypothetical protein E6C27_scaffold1248G00100 [Cucumis melo var. makuwa]

1.2e-32

78.1

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Query:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAV
        RGR +STSSKG+R SSS N APSPMS DQYAM LGFTT+T+SK+RSSGIRI SPTES TPPRP ANL+RPSG + QMR P SPLSN ESSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAV

Query:  APEKR
         P+KR
Subjt:  APEKR

TYK11076.1 hypothetical protein E5676_scaffold73G00620 [Cucumis melo var. makuwa]

9.8e-35

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Query:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAV
        RGR +STSSKG+R SSS N APSPMSADQY MDLGFTTV RS++RSS IR ESPTESSTPPRP ANL+RPSG + QMRPPASP SN ESSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAV

Query:  APEKR
         P+KR
Subjt:  APEKR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TM80 Putative Retrotransposon protein

2.0e-33

78.1

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Query:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAV
        RGR +STSSKG+R  SS N APSP+SADQYAMDLGFTTVTR  +RS GI I SPTESSTPPRPS NL+RPS G+ QMRPPASP SN ESSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAV

Query:  APEKR
         P+KR
Subjt:  APEKR

A0A5A7U8A0 Uncharacterized protein

3.6e-35

75.45

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Query:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAV
        RGR +STSSKG+R SSS N  PSPMSADQYAMDLGFTTVTRS++RSS IRI SPTESSTPP+PS NL+RPSGG+ QMR P SP SN +SSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAV

Query:  APEKRGPVLS
         P+KR  +L+
Subjt:  APEKRGPVLS

A0A5A7URX0 Uncharacterized protein

5.8e-33

78.1

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Query:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAV
        RGR +STSSKG+R SSS N APSPMSADQYAMDL FTT+TRS++RSSGIRI SPTESSTPPRPSANL+R S G+ QMRP ASP SN ESSTPPTTYS  V
Subjt:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAV

Query:  APEKR
         P+KR
Subjt:  APEKR

A0A5D3CKX1 Uncharacterized protein

4.8e-35

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Query:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAV
        RGR +STSSKG+R SSS N APSPMSADQY MDLGFTTV RS++RSS IR ESPTESSTPPRP ANL+RPSG + QMRPPASP SN ESSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAV

Query:  APEKR
         P+KR
Subjt:  APEKR

A0A5D3E4J4 Uncharacterized protein

6.9e-34

78.1

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Query:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAV
        RGR +STSSKG+RLSSS N APSPMSADQYAMDLGFT VTRS++R SGI I  PTESSTPPRPSANL+RP G + QM+PPASP SN +SSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAV

Query:  APEKR
         P+KR
Subjt:  APEKR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGTATTGTGCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCTATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGC
AATGGATTTGGGGTTTACTACGGTAACTCGATCTAAAGCAAGATCGTCCGGCATACGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTG
TTCGTCCTTCTGGCGGAATAACTCAAATGAGGCCTCCTGCCTCTCCTTTATCAAATTTGGAGTCATCAACTCCTCCCACAACATATTCTCAGGCCGTCGCTCCAGAAAAA
CGGGGTCCTGTCCTGTCTGATTCGATCTTATCCTGTTTTAAAAATCTTATCAGATAA

mRNA sequence

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Protein sequence

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MSIVRGRGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEK
RGPVLSDSILSCFKNLIR

PI0028116 (gene) of Melon (PI 482460) v1 genome