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PI0028123 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028123
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein
Genome locationchr11:19059621..19059950
RNA-Seq ExpressionPI0028123
SyntenyPI0028123
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008445 - D-aspartate oxidase activity (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MCH92231.1 hypothetical protein [Trifolium medium]8.0e-2662.35Show/hide
Query:  AKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFE
        AKIDVI  LP+PTC++++RSFLG   FY+RFIKDFSK+ALPL+NL Q+D+ F  DD CK+AFD L++ L STP++Q P+W+ PFE
Subjt:  AKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFE

XP_021603241.1 uncharacterized protein LOC110608326 [Manihot esculenta]1.0e-2560.47Show/hide
Query:  KAKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFE
        KAK+DVI+ LPYPTC++D+RSFLG   FY+RFIKDFS++A PL  L Q+DVPF  D+ C++AF+ L+++LV+ PI+Q+PNW  PFE
Subjt:  KAKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFE

XP_028797073.1 LOW QUALITY PROTEIN: uncharacterized protein LOC114752508 [Prosopis alba]5.5e-2766.28Show/hide
Query:  KAKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFE
        KAKID+I  LPYP+C+KDVRSFLG   FY+RFI+DFSK+ALPL+ L Q+DV FV DD C+ A+D+L++RL + PI+Q PNWSLPFE
Subjt:  KAKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFE

XP_028798815.1 LOW QUALITY PROTEIN: uncharacterized protein LOC114754213 [Prosopis alba]5.5e-2766.28Show/hide
Query:  KAKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFE
        KAKID+I  LPYP+C+KDVRSFLG   FY+RFI+DFSK+ALPL+ L Q+DV FV DD C+ A+D+L++RL + PI+Q PNWSLPFE
Subjt:  KAKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFE

XP_028802716.1 uncharacterized protein LOC114757797 [Prosopis alba]4.2e-2766.28Show/hide
Query:  KAKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFE
        KAKID+I  LPYP+C+KDVRSFLG   FY+RFI+DFSK+ALPL+ L Q+DV FV DD C+ A+D+L++RL + PI+Q PNWSLPFE
Subjt:  KAKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFE

TrEMBL top hitse value%identityAlignment
A0A151QKV4 Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment)1.1e-2561.18Show/hide
Query:  AKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFE
        AK+ VI +LPYP+C+++VRSFLG   FY+RF+K+FSK ALPL+NL Q+DV FV DD CK+AFD L++ L +TPI+Q+P+W++PFE
Subjt:  AKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFE

A0A151QLW7 Retrovirus-related Pol polyprotein from transposon opus1.1e-2561.18Show/hide
Query:  AKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFE
        AK+ VI +LPYP+C+++VRSFLG   FY+RF+K+FSK ALPL+NL Q+DV FV DD CK+AFD L++ L +TPI+Q+P+W++PFE
Subjt:  AKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFE

A0A151QZW2 Transposon Ty3-G Gag-Pol polyprotein (Fragment)1.1e-2561.18Show/hide
Query:  AKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFE
        AK+ VI +LPYP+C+++VRSFLG   FY+RF+K+FSK ALPL+NL Q+DV FV DD CK+AFD L++ L +TPI+Q+P+W++PFE
Subjt:  AKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFE

A0A151RB09 Transposon Ty3-G Gag-Pol polyprotein1.1e-2561.18Show/hide
Query:  AKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFE
        AK+ VI +LPYP+C+++VRSFLG   FY+RF+K+FSK ALPL+NL Q+DV FV DD CK+AFD L++ L +TPI+Q+P+W++PFE
Subjt:  AKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFE

A0A392MXJ5 Uncharacterized protein (Fragment)3.9e-2662.35Show/hide
Query:  AKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFE
        AKIDVI  LP+PTC++++RSFLG   FY+RFIKDFSK+ALPL+NL Q+D+ F  DD CK+AFD L++ L STP++Q P+W+ PFE
Subjt:  AKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFE

SwissProt top hitse value%identityAlignment
P03359 Gag-Pol polyprotein6.8e-1238.64Show/hide
Query:  AKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFENYV
        A+   + K+P PT  + VR FLG+  F + +I  F+ LA PL  L +E +PF+  +  +KAFD +++ L+S P L  P+ + PF  YV
Subjt:  AKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFENYV

P10394 Retrovirus-related Pol polyprotein from transposon 4124.4e-1138.55Show/hide
Query:  KIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPF
        K DVIQ  P P      R F+   ++Y+RFIK+F+  +  +T L +++VPF   D C+KAF  L+ +L++  +LQ P++S  F
Subjt:  KIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPF

P21414 Gag-Pol polyprotein1.5e-1136.36Show/hide
Query:  AKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFENYV
        A+   + K+P PT  + VR FLG+  F + +I  F+ LA PL  L +E +PF+  +  ++AFD +++ L+S P L  P+ + PF  Y+
Subjt:  AKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFENYV

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus6.8e-1236.17Show/hide
Query:  KIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQ-----------EDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPF
        K+  I ++P PT +K+++ FLG  S+Y++FI+D++K+A PLTNL +             VP  +D+   ++F+DL+  L S+ IL  P ++ PF
Subjt:  KIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQ-----------EDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPF

Q9TTC1 Gag-Pol polyprotein3.8e-1037.5Show/hide
Query:  AKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFENYV
        A+   + K+P PT  + VR FLG+  F + +I  F+ LA PL  L +E VPF   +  ++AF  +++ L+S P L  P+ + PF  YV
Subjt:  AKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFENYV

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein2.8e-0831.46Show/hide
Query:  VSHHKAKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPF
        VS   AK++ +   P P    ++R FLG   +Y+RF+K++ K+  PLT L +++      +    AF  L+  + + P+L  P+  LPF
Subjt:  VSHHKAKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATCACATCATAAAGCAAAAATTGATGTTATACAAAAATTACCATATCCAACATGCTTAAAAGATGTTAGATCCTTCCTTGGTAGTCTCAGCTTCTATAAACGGTT
TATAAAGGATTTTTCTAAACTTGCTTTACCTCTAACTAATCTATTCCAAGAAGATGTACCATTTGTAATTGACGACAATTGTAAGAAGGCATTTGATGATCTCAGGCAAA
GGTTAGTCTCTACCCCTATTCTTCAATCTCCTAATTGGAGTTTACCTTTTGAAAATTATGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTATCACATCATAAAGCAAAAATTGATGTTATACAAAAATTACCATATCCAACATGCTTAAAAGATGTTAGATCCTTCCTTGGTAGTCTCAGCTTCTATAAACGGTT
TATAAAGGATTTTTCTAAACTTGCTTTACCTCTAACTAATCTATTCCAAGAAGATGTACCATTTGTAATTGACGACAATTGTAAGAAGGCATTTGATGATCTCAGGCAAA
GGTTAGTCTCTACCCCTATTCTTCAATCTCCTAATTGGAGTTTACCTTTTGAAAATTATGTGTGA
Protein sequenceShow/hide protein sequence
MVSHHKAKIDVIQKLPYPTCLKDVRSFLGSLSFYKRFIKDFSKLALPLTNLFQEDVPFVIDDNCKKAFDDLRQRLVSTPILQSPNWSLPFENYV