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PI0028127 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028127
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionphotosystem I reaction center subunit VI, chloroplastic
Genome locationchr04:13448154..13449166
RNA-Seq ExpressionPI0028127
SyntenyPI0028127
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009538 - photosystem I reaction center (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004928 - Photosystem I PsaH, reaction centre subunit VI


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581890.1 Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]4.5e-4196.7Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
        MASLATLAAVQPVTVKGLGGSSLAG KLPLRP+RQSFRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET

KAG7018324.1 Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]4.5e-4196.7Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
        MASLATLAAVQPVTVKGLGGSSLAG KLPLRP+RQSFRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET

XP_008447512.1 PREDICTED: photosystem I reaction center subunit VI, chloroplastic [Cucumis melo]5.3e-4298.9Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
        MASLATLAAVQP TVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET

XP_011651500.1 photosystem I reaction center subunit VI, chloroplastic [Cucumis sativus]4.1e-4298.9Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
        MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQ+FRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET

XP_022955723.1 photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita moschata]2.0e-4197.8Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
        MASLATLAAVQPVTVKGLGGSSLAG KLPLRPSRQSFRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET

TrEMBL top hitse value%identityAlignment
A0A0A0LAW4 Uncharacterized protein2.0e-4298.9Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
        MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQ+FRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET

A0A1S3BI80 photosystem I reaction center subunit VI, chloroplastic2.6e-4298.9Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
        MASLATLAAVQP TVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET

A0A5D3C9C3 Photosystem I reaction center subunit VI2.6e-4298.9Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
        MASLATLAAVQP TVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET

A0A6J1GUS6 photosystem I reaction center subunit VI, chloroplastic-like9.8e-4297.8Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
        MASLATLAAVQPVTVKGLGGSSLAG KLPLRPSRQSFRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET

A0A6J1IVS0 photosystem I reaction center subunit VI, chloroplastic-like9.8e-4297.8Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
        MASLATLAAVQPVTVKGLGGSSLAG KLPLRPSRQSFRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET

SwissProt top hitse value%identityAlignment
A2Y7D9 Photosystem I reaction center subunit VI, chloroplastic9.1e-2973.03Show/hide
Query:  LATLAAVQPVTVKGLGGSSLAGAKLPLRPS-RQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
        +A+L AVQPV VKGL GSS++G KL +RPS R   R       AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFET
Subjt:  LATLAAVQPVTVKGLGGSSLAGAKLPLRPS-RQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET

O04006 Photosystem I reaction center subunit VI, chloroplastic4.1e-3784.78Show/hide
Query:  MASLATLAAVQPVT-VKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
        MAS AT+AAVQP + VKGLGGSSL GAKL ++PSRQSF+PK+ +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFET
Subjt:  MASLATLAAVQPVT-VKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET

P22179 Photosystem I reaction center subunit VI, chloroplastic3.5e-3679.12Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
        MASLATLAAVQP T+KGL GSS+AG KL ++P+RQSF+  N ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFET
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET

Q9SUI6 Photosystem I reaction center subunit VI-2, chloroplastic2.7e-3683.7Show/hide
Query:  MASLATLAAVQP-VTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
        MAS AT+AAVQP   VKGLGGSSLAGAKL ++PSRQSF+ K+ +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFET
Subjt:  MASLATLAAVQP-VTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET

Q9SUI7 Photosystem I reaction center subunit VI-1, chloroplastic1.3e-3580.43Show/hide
Query:  MASLATLAAVQP-VTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
        MASLAT+AAV+P   +KGLGGSSLAGAKL ++PSR SF+PK+ +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFET
Subjt:  MASLATLAAVQP-VTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET

Arabidopsis top hitse value%identityAlignment
AT1G52230.1 photosystem I subunit H21.9e-3783.7Show/hide
Query:  MASLATLAAVQP-VTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
        MAS AT+AAVQP   VKGLGGSSLAGAKL ++PSRQSF+ K+ +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFET
Subjt:  MASLATLAAVQP-VTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET

AT3G16140.1 photosystem I subunit H-19.4e-3780.43Show/hide
Query:  MASLATLAAVQP-VTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET
        MASLAT+AAV+P   +KGLGGSSLAGAKL ++PSR SF+PK+ +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFET
Subjt:  MASLATLAAVQP-VTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFET


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTTAGCAACATTAGCCGCCGTTCAACCGGTCACCGTGAAGGGTCTTGGTGGAAGCTCCCTTGCCGGAGCCAAGCTCCCTCTCAGACCATCTCGCCAGAGCTT
CAGACCAAAAAACTTCAAGGCTGGTGCTGTGGTTGCTAAGTATGGTGACAAGAGTGTTTACTTTGATTTGGAGGATTTGGGCAACACTACTGGACAGTGGGATTTGTATG
GATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTGCTGCTCCATTCACCAAGAGAGGATTGTTGCTCAAATTCTTGCTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCTTAGCAACATTAGCCGCCGTTCAACCGGTCACCGTGAAGGGTCTTGGTGGAAGCTCCCTTGCCGGAGCCAAGCTCCCTCTCAGACCATCTCGCCAGAGCTT
CAGACCAAAAAACTTCAAGGCTGGTGCTGTGGTTGCTAAGTATGGTGACAAGAGTGTTTACTTTGATTTGGAGGATTTGGGCAACACTACTGGACAGTGGGATTTGTATG
GATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTGCTGCTCCATTCACCAAGAGAGGATTGTTGCTCAAATTCTTGCTACTAG
Protein sequenceShow/hide protein sequence
MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETLLLHSPREDCCSNSCY