CuGenDBv2

Gene ID	PI0028154
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr06:11668044..11669858
RNA-Seq Expression	PI0028154
Synteny	PI0028154
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR024752 - Myb/SANT-like domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031555.1 retrotransposon protein [Cucumis melo var. makuwa]

2.2e-54

67.61

Show/hide

Query:  METSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITAST-IDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKC
        M TS+R P+H W +EE+ TLVECL+ELV+ GGW+SDNGTFRPGY + L +MM E++ G  + A+T IDCRIKTLKR FQAI+EMRGP C GFGWNDE KC
Subjt:  METSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITAST-IDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKC

Query:  IIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRDRAT
        I+AEK+L+DNWV+SHPA KGL+N+ FP+Y++L Y+FGRDRAT
Subjt:  IIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRDRAT

KAA0038975.1 retrotransposon protein [Cucumis melo var. makuwa]

2.2e-54

67.61

Show/hide

Query:  METSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITAST-IDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKC
        M TS+R P+H W +EE+ TLVECL+ELV+ GGW+SDNGTFRPGY + L +MM E++ G  + A+T IDCRIKTLKR FQAI+EMRGP C GFGWNDE KC
Subjt:  METSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITAST-IDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKC

Query:  IIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRDRAT
        I+AEK+L+DNWV+SHPA KGL+N+ FP+Y++L Y+FGRDRAT
Subjt:  IIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRDRAT

KAA0052259.1 retrotransposon protein [Cucumis melo var. makuwa]

7.5e-55

67.61

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Query:  METSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITAST-IDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKC
        M TS+R P+H W KEE+ TLVECL+ELV+ GGW+SDNGTFRPGY + L +MM E++ G+ + A+T IDCRIKTLKR FQAI+E+RGP C GFGWNDE KC
Subjt:  METSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITAST-IDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKC

Query:  IIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRDRAT
        I+AEK+L+DNWV+SHPA KGL+N+ FP+Y++L Y+FGRDRAT
Subjt:  IIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRDRAT

KAA0065929.1 retrotransposon protein [Cucumis melo var. makuwa]

2.6e-55

69.01

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Query:  METSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITAST-IDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKC
        M TS+R P+H W KEE+ TLVECL+ELV+ GGW+SDNGTFRPGY + L +MM E++ G  + A+T IDCRIKTLKR FQAI+EMRGP C GFGWNDE+KC
Subjt:  METSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITAST-IDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKC

Query:  IIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRDRAT
        IIAEK+L+DNWV+SHPA KGL+N+ FP+Y++L Y+FGRDRAT
Subjt:  IIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRDRAT

TYJ96194.1 retrotransposon protein [Cucumis melo var. makuwa]

2.2e-54

67.61

Show/hide

Query:  METSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITAST-IDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKC
        M TS+R P+H W +EE+ TLVECL+ELV+ GGW+SDNGTFRPGY + L +MM E++ G  + A+T IDCRIKTLKR FQAI+EMRGP C GFGWNDE KC
Subjt:  METSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITAST-IDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKC

Query:  IIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRDRAT
        I+AEK+L+DNWV+SHPA KGL+N+ FP+Y++L Y+FGRDRAT
Subjt:  IIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRDRAT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TRV1 Retrotransposon protein

1.1e-54

67.61

Show/hide

Query:  METSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITAST-IDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKC
        M TS+R P+H W +EE+ TLVECL+ELV+ GGW+SDNGTFRPGY + L +MM E++ G  + A+T IDCRIKTLKR FQAI+EMRGP C GFGWNDE KC
Subjt:  METSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITAST-IDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKC

Query:  IIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRDRAT
        I+AEK+L+DNWV+SHPA KGL+N+ FP+Y++L Y+FGRDRAT
Subjt:  IIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRDRAT

A0A5A7UFK7 Retrotransposon protein

3.6e-55

67.61

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Query:  METSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITAST-IDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKC
        M TS+R P+H W KEE+ TLVECL+ELV+ GGW+SDNGTFRPGY + L +MM E++ G+ + A+T IDCRIKTLKR FQAI+E+RGP C GFGWNDE KC
Subjt:  METSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITAST-IDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKC

Query:  IIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRDRAT
        I+AEK+L+DNWV+SHPA KGL+N+ FP+Y++L Y+FGRDRAT
Subjt:  IIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRDRAT

A0A5A7VKT2 Retrotransposon protein

1.2e-55

69.01

Show/hide

Query:  METSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITAST-IDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKC
        M TS+R P+H W KEE+ TLVECL+ELV+ GGW+SDNGTFRPGY + L +MM E++ G  + A+T IDCRIKTLKR FQAI+EMRGP C GFGWNDE+KC
Subjt:  METSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITAST-IDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKC

Query:  IIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRDRAT
        IIAEK+L+DNWV+SHPA KGL+N+ FP+Y++L Y+FGRDRAT
Subjt:  IIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRDRAT

A0A5D3CWL2 Retrotransposon protein

1.1e-54

67.61

Show/hide

Query:  METSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITAST-IDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKC
        M TS+R P+H W +EE+ TLVECL+ELV+ GGW+SDNGTFRPGY + L +MM E++ G  + A+T IDCRIKTLKR FQAI+EMRGP C GFGWNDE KC
Subjt:  METSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITAST-IDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKC

Query:  IIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRDRAT
        I+AEK+L+DNWV+SHPA KGL+N+ FP+Y++L Y+FGRDRAT
Subjt:  IIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRDRAT

A0A5D3DCZ1 Retrotransposon protein

1.1e-54

67.61

Show/hide

Query:  METSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITAST-IDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKC
        M TS+R P+H W +EE+ TLVECL+ELV+ GGW+SDNGTFRPGY + L +MM E++ G  + A+T IDCRIKTLKR FQAI+EMRGP C GFGWNDE KC
Subjt:  METSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITAST-IDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKC

Query:  IIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRDRAT
        I+AEK+L+DNWV+SHPA KGL+N+ FP+Y++L Y+FGRDRAT
Subjt:  IIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRDRAT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G24960.2 unknown protein

3.3e-08

24.09

Show/hide

Query:  ETSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITASTIDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKCII
        E +S   +  W    D  L++ LVE V  G  R         ++  +     +    HN     +  R K L+R++  I  +      GF W+     +I
Subjt:  ETSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHNITASTIDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKCII

Query:  AEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRD
        A+ D+++ ++++HP  +    +  P Y +LC+IFG++
Subjt:  AEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRD

AT4G02210.1 unknown protein

4.7e-07

29.49

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Query:  NITASTIDCRIKTLKRVFQAI-SEMRGPLCCGFGWNDELKCIIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFG
        N     +  R K+L+R F AI S +R     GF W++E + + A+ +++ +++K+H   +  +    P+Y DLC + G
Subjt:  NITASTIDCRIKTLKRVFQAI-SEMRGPLCCGFGWNDELKCIIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFG

AT4G02210.2 unknown protein

4.7e-07

29.49

Show/hide

Query:  NITASTIDCRIKTLKRVFQAI-SEMRGPLCCGFGWNDELKCIIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFG
        N     +  R K+L+R F AI S +R     GF W++E + + A+ +++ +++K+H   +  +    P+Y DLC + G
Subjt:  NITASTIDCRIKTLKRVFQAI-SEMRGPLCCGFGWNDELKCIIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFG

Sequences

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CDS sequence

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ATGAAAACGACCTCGTGTGTCGTCAAAGTACGCGAATGGACAGACGATGCTTCACCATTTTATGCCATCTACTCCGGACTATGTCGAAGAAATGGTCGCCCTGTTCCTTC
ACGTACTGGCGCACGACGTAAAAAATCGTGTCATTCAATTATGGAAACTTCTTCAAGGACCCCAAAGCACCACTGGAAGAAAGAGGAAGATGTCACCCTTGTTGAATGTC
TGGTGGAATTGGTAGCAGCTGGCGGCTGGAGGTCAGACAACGGGACATTTAGACCCGGTTACCATAGTCATCTGCAGAAAATGATGGTCGAGAGGATGCTGGGACATAAC
ATAACGGCTTCGACCATTGATTGTCGGATAAAGACGCTTAAAAGAGTGTTTCAAGCCATATCTGAAATGAGGGGTCCATTGTGTTGTGGGTTCGGTTGGAACGATGAGCT
CAAATGCATCATTGCGGAGAAAGACTTGTACGACAATTGGGTGAAGAGTCATCCAGCCGTAAAGGGCCTCATAAACGAACTCTTTCCCCATTACAACGACCTATGCTACA
TCTTTGGAAGAGATCGTGCAACATGA

mRNA sequence

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Protein sequence

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MKTTSCVVKVREWTDDASPFYAIYSGLCRRNGRPVPSRTGARRKKSCHSIMETSSRTPKHHWKKEEDVTLVECLVELVAAGGWRSDNGTFRPGYHSHLQKMMVERMLGHN
ITASTIDCRIKTLKRVFQAISEMRGPLCCGFGWNDELKCIIAEKDLYDNWVKSHPAVKGLINELFPHYNDLCYIFGRDRAT

PI0028154 (gene) of Melon (PI 482460) v1 genome