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PI0028158 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028158
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr03:14692592..14696918
RNA-Seq ExpressionPI0028158
SyntenyPI0028158
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042123.1 gag/pol protein [Cucumis melo var. makuwa]2.8e-3670.45Show/hide
Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQTFQSLMKNKGQKEGEANVAHSK
        MSD+LSKK E MVTARQIMDSL+E+FGQ SIQI+ EAIKYVYN RMKE QS+REHVL+M+V FNV E NGAV DE+SQ+       KGQKEGEANVAHS+
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQTFQSLMKNKGQKEGEANVAHSK

Query:  RFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKG
        RF          APSSSG+KKIQK+KGGKGKG
Subjt:  RFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKG

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]8.2e-3659.28Show/hide
Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQS-----------------------
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE S                       
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQS-----------------------

Query:  -------------QTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG
                     QTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKKGG+G
Subjt:  -------------QTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]8.2e-3659.28Show/hide
Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQS-----------------------
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE S                       
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQS-----------------------

Query:  -------------QTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG
                     QTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKKGG+G
Subjt:  -------------QTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]8.2e-3659.28Show/hide
Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQS-----------------------
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE S                       
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQS-----------------------

Query:  -------------QTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG
                     QTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKKGG+G
Subjt:  -------------QTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]8.2e-3659.28Show/hide
Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQS-----------------------
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE S                       
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQS-----------------------

Query:  -------------QTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG
                     QTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKKGG+G
Subjt:  -------------QTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein4.0e-3659.28Show/hide
Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQS-----------------------
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE S                       
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQS-----------------------

Query:  -------------QTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG
                     QTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKKGG+G
Subjt:  -------------QTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG

A0A5A7TFX6 Gag/pol protein1.4e-3670.45Show/hide
Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQTFQSLMKNKGQKEGEANVAHSK
        MSD+LSKK E MVTARQIMDSL+E+FGQ SIQI+ EAIKYVYN RMKE QS+REHVL+M+V FNV E NGAV DE+SQ+       KGQKEGEANVAHS+
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQTFQSLMKNKGQKEGEANVAHSK

Query:  RFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKG
        RF          APSSSG+KKIQK+KGGKGKG
Subjt:  RFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKG

A0A5A7TU93 Gag/pol protein4.0e-3659.28Show/hide
Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQS-----------------------
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE S                       
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQS-----------------------

Query:  -------------QTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG
                     QTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKKGG+G
Subjt:  -------------QTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG

A0A5A7V4M1 Gag/pol protein4.0e-3659.28Show/hide
Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQS-----------------------
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE S                       
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQS-----------------------

Query:  -------------QTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG
                     QTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKKGG+G
Subjt:  -------------QTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG

A0A5D3CPJ6 Gag/pol protein4.0e-3659.28Show/hide
Query:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQS-----------------------
        +S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV FNVAE NGAVIDE S                       
Subjt:  MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQS-----------------------

Query:  -------------QTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG
                     QTF+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKKGG+G
Subjt:  -------------QTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACTGTCCATTCAAATCCGACACGAGGC
TATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTG
ACGAGCAAAGTCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACC
AAGTCTGCACCTTCATCTTCTGGGACTAAGAAAATCCAGAAGAAGAAAGGAGGAAAGGGGAAAGGTGACATGCGAGTGAGGGTATCCCATGCAATGAGTTTGCATAAGAC
CGGACCACGAAATAGTAACCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACTGTCCATTCAAATCCGACACGAGGC
TATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTG
ACGAGCAAAGTCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACC
AAGTCTGCACCTTCATCTTCTGGGACTAAGAAAATCCAGAAGAAGAAAGGAGGAAAGGGGAAAGGTGACATGCGAGTGAGGGTATCCCATGCAATGAGTTTGCATAAGAC
CGGACCACGAAATAGTAACCACTAG
Protein sequenceShow/hide protein sequence
MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGT
KSAPSSSGTKKIQKKKGGKGKGDMRVRVSHAMSLHKTGPRNSNH