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PI0028175 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028175
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr04:22198634..22200612
RNA-Seq ExpressionPI0028175
SyntenyPI0028175
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031701.1 hypothetical protein E6C27_scaffold139G004850 [Cucumis melo var. makuwa]5.4e-1938.04Show/hide
Query:  YKALEPERDLEVIAEELEDELEAMSP--IEQGP--------PPKKQREVAEQSKGKKKIGDFGPEEHPIGGEAKVKTPSINSLIKGHTKLRMGVVEKFYA
        YK  +   +   +AEEL+ E+EAMS   + +GP        PP   +   E       + D         G  K          KG +K+R+ VV KFYA
Subjt:  YKALEPERDLEVIAEELEDELEAMSP--IEQGP--------PPKKQREVAEQSKGKKKIGDFGPEEHPIGGEAKVKTPSINSLIKGHTKLRMGVVEKFYA

Query:  AKINAEEFSVEINGRVVSFNAEAISAQYDLPNDVETPGHEYVVSPTKKMAFEALEVIAWPGAGWEVTPTGKYQLYPHQLTTEAS
        +  N  E+   ++ +   FN EAI+  Y+ P D ETP H  + +  K+ A EALE IAW GA +++TPTGKY LYPHQLT EAS
Subjt:  AKINAEEFSVEINGRVVSFNAEAISAQYDLPNDVETPGHEYVVSPTKKMAFEALEVIAWPGAGWEVTPTGKYQLYPHQLTTEAS

KAA0050753.1 hypothetical protein E6C27_scaffold46449G00020 [Cucumis melo var. makuwa]4.4e-2138.34Show/hide
Query:  FADLSEPVEEIPAKYKALEPERDLEVIAEELEDELEAMS-PIEQGPPPKKQRE---VAEQSKGKKKIGDFGPEEHPIGGE-AKVKTPSINSLIKGHTKLR
        F  +SE VE +  K   +  E D+E +AEEL+ E+EAMS   ++   PKK R+   +  + + + ++    PE    GGE  K    SI   +KG +K+R
Subjt:  FADLSEPVEEIPAKYKALEPERDLEVIAEELEDELEAMS-PIEQGPPPKKQRE---VAEQSKGKKKIGDFGPEEHPIGGE-AKVKTPSINSLIKGHTKLR

Query:  MGVVEKFYAAKINAEEFSVEINGRVVSFNAEAISAQYDLPNDVETPGHEYVVSPTKKMAFEALEVIAWPGAGWEVTPTGKYQLYPHQLTTEAS
        + V+ KFY + +N  E+ V ++G+ + FN EAI+  YDLP D +TP    + +  K+ A EAL+ I W G   ++T T  Y LYPH+LTT+AS
Subjt:  MGVVEKFYAAKINAEEFSVEINGRVVSFNAEAISAQYDLPNDVETPGHEYVVSPTKKMAFEALEVIAWPGAGWEVTPTGKYQLYPHQLTTEAS

KAA0053237.1 hypothetical protein E6C27_scaffold102G00220 [Cucumis melo var. makuwa]4.9e-2027.47Show/hide
Query:  YDLPNDVETPGHEYVVSPTKKMAFEALEVIAWPGAGWEVTPTGKYQLYPHQLTTEASKRV----NLGDLIDTSILSWMRAPKGAMPFQSTVEALYVKVVP
        YDL ND   P HE +  PTK +A E L                 YQL  H++   A++++    NLG +I  +I +WM  PKGA  F S +E LY+K +P
Subjt:  YDLPNDVETPGHEYVVSPTKKMAFEALEVIAWPGAGWEVTPTGKYQLYPHQLTTEASKRV----NLGDLIDTSILSWMRAPKGAMPFQSTVEALYVKVVP

Query:  FLSAINSMPIPNGLCNQISLNHMITFHAHKEMERRSKTLG-----------------------------------------DTAGEGATQADRKRKPLPS
         L+ +    IP+ + NQ +LN +ITFH +KE E   KTLG                                           A E  +   +K   LP 
Subjt:  FLSAINSMPIPNGLCNQISLNHMITFHAHKEMERRSKTLG-----------------------------------------DTAGEGATQADRKRKPLPS

Query:  HQLLNQKSSIADLSNFYSFKE----DANPDIGVSKPPPPVL------------------------------------DTRDHVDDPHIKGKTPILDDAGE
         +LL +      L N    K     D N  + V K  P  L                                    +T+ +VDDP  K K    + AG 
Subjt:  HQLLNQKSSIADLSNFYSFKE----DANPDIGVSKPPPPVL------------------------------------DTRDHVDDPHIKGKTPILDDAGE

Query:  TASS-AHTTNVQTTTASIEEENLGDLLGSLVCKSVFDCFDQVLAHQANQAEHLQALKSLVDQLQ
        T+SS +   +++ +    E +NL DL+G+ +CK  FD F+QVL  Q   +     + +++D++Q
Subjt:  TASS-AHTTNVQTTTASIEEENLGDLLGSLVCKSVFDCFDQVLAHQANQAEHLQALKSLVDQLQ

KAA0062900.1 gag/pol protein [Cucumis melo var. makuwa]1.7e-2036.41Show/hide
Query:  KLRMGVVEKFYAAKINAEEFSVEINGRVVSFNAEAISAQYDLPNDVETPGHEYVVSPTKKMAFEALEVIAWPGAGWEVTPTG-KYQLYPHQLTTEAS---
        K+RM VV KFY  K N  +  + I      FN E I+  Y+ PND E  G E V   TK +A EAL+V+AWPG   EV P   +YQLYPH LTT+A+   
Subjt:  KLRMGVVEKFYAAKINAEEFSVEINGRVVSFNAEAISAQYDLPNDVETPGHEYVVSPTKKMAFEALEVIAWPGAGWEVTPTG-KYQLYPHQLTTEAS---

Query:  ------------------------------KRVNLGDLIDTSILSWMRAPKGAMPFQSTVEALYVKVVPFLSAINSMPIP---------NGL----CNQI
                                      K +NL ++I  +IL+WM  PK AMPF S +E L +K +P L       IP         +GL    C+  
Subjt:  ------------------------------KRVNLGDLIDTSILSWMRAPKGAMPFQSTVEALYVKVVPFLSAINSMPIP---------NGL----CNQI

Query:  SLNHMI
        S +H+I
Subjt:  SLNHMI

TYK05842.1 gag/pol protein [Cucumis melo var. makuwa]3.6e-2342.2Show/hide
Query:  KLRMGVVEKFYAAKINAEEFSVEINGRVVSFNAEAISAQYDLPNDVETPGHEYVVSPTKKMAFEALEVIAWPGAGWEVTPTG-KYQLYPHQLTTEASKRV
        K+RM VV KFY  K N  +  + I      FN E I+  Y+ PND E  G E V   TK +A EAL+V+AWPG   EV P   +YQLYPH LTT+A+  +
Subjt:  KLRMGVVEKFYAAKINAEEFSVEINGRVVSFNAEAISAQYDLPNDVETPGHEYVVSPTKKMAFEALEVIAWPGAGWEVTPTG-KYQLYPHQLTTEASKRV

Query:  NLGDLIDTSILSWMRAPKGAMPFQSTVEALYVKVVPFLSAINSMPIP---------NGL----CNQISLNHMI
        NL ++I  +IL+WM  PK  MPF S +E L +K +P L       IP         +GL    C+  S +H+I
Subjt:  NLGDLIDTSILSWMRAPKGAMPFQSTVEALYVKVVPFLSAINSMPIP---------NGL----CNQISLNHMI

TrEMBL top hitse value%identityAlignment
A0A5A7SQ81 Uncharacterized protein2.6e-1938.04Show/hide
Query:  YKALEPERDLEVIAEELEDELEAMSP--IEQGP--------PPKKQREVAEQSKGKKKIGDFGPEEHPIGGEAKVKTPSINSLIKGHTKLRMGVVEKFYA
        YK  +   +   +AEEL+ E+EAMS   + +GP        PP   +   E       + D         G  K          KG +K+R+ VV KFYA
Subjt:  YKALEPERDLEVIAEELEDELEAMSP--IEQGP--------PPKKQREVAEQSKGKKKIGDFGPEEHPIGGEAKVKTPSINSLIKGHTKLRMGVVEKFYA

Query:  AKINAEEFSVEINGRVVSFNAEAISAQYDLPNDVETPGHEYVVSPTKKMAFEALEVIAWPGAGWEVTPTGKYQLYPHQLTTEAS
        +  N  E+   ++ +   FN EAI+  Y+ P D ETP H  + +  K+ A EALE IAW GA +++TPTGKY LYPHQLT EAS
Subjt:  AKINAEEFSVEINGRVVSFNAEAISAQYDLPNDVETPGHEYVVSPTKKMAFEALEVIAWPGAGWEVTPTGKYQLYPHQLTTEAS

A0A5A7U4E3 Uncharacterized protein2.2e-2138.34Show/hide
Query:  FADLSEPVEEIPAKYKALEPERDLEVIAEELEDELEAMS-PIEQGPPPKKQRE---VAEQSKGKKKIGDFGPEEHPIGGE-AKVKTPSINSLIKGHTKLR
        F  +SE VE +  K   +  E D+E +AEEL+ E+EAMS   ++   PKK R+   +  + + + ++    PE    GGE  K    SI   +KG +K+R
Subjt:  FADLSEPVEEIPAKYKALEPERDLEVIAEELEDELEAMS-PIEQGPPPKKQRE---VAEQSKGKKKIGDFGPEEHPIGGE-AKVKTPSINSLIKGHTKLR

Query:  MGVVEKFYAAKINAEEFSVEINGRVVSFNAEAISAQYDLPNDVETPGHEYVVSPTKKMAFEALEVIAWPGAGWEVTPTGKYQLYPHQLTTEAS
        + V+ KFY + +N  E+ V ++G+ + FN EAI+  YDLP D +TP    + +  K+ A EAL+ I W G   ++T T  Y LYPH+LTT+AS
Subjt:  MGVVEKFYAAKINAEEFSVEINGRVVSFNAEAISAQYDLPNDVETPGHEYVVSPTKKMAFEALEVIAWPGAGWEVTPTGKYQLYPHQLTTEAS

A0A5A7UFG4 Uncharacterized protein2.4e-2027.47Show/hide
Query:  YDLPNDVETPGHEYVVSPTKKMAFEALEVIAWPGAGWEVTPTGKYQLYPHQLTTEASKRV----NLGDLIDTSILSWMRAPKGAMPFQSTVEALYVKVVP
        YDL ND   P HE +  PTK +A E L                 YQL  H++   A++++    NLG +I  +I +WM  PKGA  F S +E LY+K +P
Subjt:  YDLPNDVETPGHEYVVSPTKKMAFEALEVIAWPGAGWEVTPTGKYQLYPHQLTTEASKRV----NLGDLIDTSILSWMRAPKGAMPFQSTVEALYVKVVP

Query:  FLSAINSMPIPNGLCNQISLNHMITFHAHKEMERRSKTLG-----------------------------------------DTAGEGATQADRKRKPLPS
         L+ +    IP+ + NQ +LN +ITFH +KE E   KTLG                                           A E  +   +K   LP 
Subjt:  FLSAINSMPIPNGLCNQISLNHMITFHAHKEMERRSKTLG-----------------------------------------DTAGEGATQADRKRKPLPS

Query:  HQLLNQKSSIADLSNFYSFKE----DANPDIGVSKPPPPVL------------------------------------DTRDHVDDPHIKGKTPILDDAGE
         +LL +      L N    K     D N  + V K  P  L                                    +T+ +VDDP  K K    + AG 
Subjt:  HQLLNQKSSIADLSNFYSFKE----DANPDIGVSKPPPPVL------------------------------------DTRDHVDDPHIKGKTPILDDAGE

Query:  TASS-AHTTNVQTTTASIEEENLGDLLGSLVCKSVFDCFDQVLAHQANQAEHLQALKSLVDQLQ
        T+SS +   +++ +    E +NL DL+G+ +CK  FD F+QVL  Q   +     + +++D++Q
Subjt:  TASS-AHTTNVQTTTASIEEENLGDLLGSLVCKSVFDCFDQVLAHQANQAEHLQALKSLVDQLQ

A0A5A7V6M5 Gag/pol protein8.2e-2136.41Show/hide
Query:  KLRMGVVEKFYAAKINAEEFSVEINGRVVSFNAEAISAQYDLPNDVETPGHEYVVSPTKKMAFEALEVIAWPGAGWEVTPTG-KYQLYPHQLTTEAS---
        K+RM VV KFY  K N  +  + I      FN E I+  Y+ PND E  G E V   TK +A EAL+V+AWPG   EV P   +YQLYPH LTT+A+   
Subjt:  KLRMGVVEKFYAAKINAEEFSVEINGRVVSFNAEAISAQYDLPNDVETPGHEYVVSPTKKMAFEALEVIAWPGAGWEVTPTG-KYQLYPHQLTTEAS---

Query:  ------------------------------KRVNLGDLIDTSILSWMRAPKGAMPFQSTVEALYVKVVPFLSAINSMPIP---------NGL----CNQI
                                      K +NL ++I  +IL+WM  PK AMPF S +E L +K +P L       IP         +GL    C+  
Subjt:  ------------------------------KRVNLGDLIDTSILSWMRAPKGAMPFQSTVEALYVKVVPFLSAINSMPIP---------NGL----CNQI

Query:  SLNHMI
        S +H+I
Subjt:  SLNHMI

A0A5D3C3P6 Gag/pol protein1.8e-2342.2Show/hide
Query:  KLRMGVVEKFYAAKINAEEFSVEINGRVVSFNAEAISAQYDLPNDVETPGHEYVVSPTKKMAFEALEVIAWPGAGWEVTPTG-KYQLYPHQLTTEASKRV
        K+RM VV KFY  K N  +  + I      FN E I+  Y+ PND E  G E V   TK +A EAL+V+AWPG   EV P   +YQLYPH LTT+A+  +
Subjt:  KLRMGVVEKFYAAKINAEEFSVEINGRVVSFNAEAISAQYDLPNDVETPGHEYVVSPTKKMAFEALEVIAWPGAGWEVTPTG-KYQLYPHQLTTEASKRV

Query:  NLGDLIDTSILSWMRAPKGAMPFQSTVEALYVKVVPFLSAINSMPIP---------NGL----CNQISLNHMI
        NL ++I  +IL+WM  PK  MPF S +E L +K +P L       IP         +GL    C+  S +H+I
Subjt:  NLGDLIDTSILSWMRAPKGAMPFQSTVEALYVKVVPFLSAINSMPIP---------NGL----CNQISLNHMI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGCGGACCTGAGCGAACCAGTGGAGGAGATACCTGCGAAGTACAAGGCTTTAGAGCCAGAGAGAGACCTCGAGGTCATCGCTGAGGAACTCGAGGATGAGCTAGA
GGCGATGAGCCCAATTGAGCAAGGGCCACCACCTAAAAAGCAAAGGGAGGTGGCCGAACAATCAAAAGGGAAAAAGAAAATTGGGGACTTTGGACCTGAAGAGCACCCAA
TAGGCGGCGAAGCAAAAGTGAAAACACCCTCTATCAATTCACTCATAAAGGGGCACACCAAGCTAAGGATGGGTGTGGTGGAAAAATTCTATGCCGCTAAGATCAATGCT
GAGGAGTTTAGCGTGGAAATCAATGGAAGGGTGGTGAGCTTCAACGCGGAGGCCATTAGCGCTCAATATGACTTGCCCAATGATGTTGAGACGCCTGGGCATGAATACGT
GGTCAGCCCAACCAAGAAAATGGCCTTTGAAGCGTTGGAAGTCATCGCCTGGCCTGGGGCCGGATGGGAAGTTACGCCGACGGGGAAATATCAACTTTATCCACACCAGT
TGACCACAGAAGCAAGTAAGCGCGTCAACCTCGGCGATCTAATAGATACATCCATCCTGTCCTGGATGCGAGCTCCTAAGGGCGCCATGCCCTTCCAATCAACAGTTGAA
GCCCTCTATGTGAAGGTCGTGCCTTTTCTAAGTGCCATCAACTCAATGCCCATTCCAAACGGCCTGTGCAACCAGATATCTTTGAATCACATGATCACCTTCCATGCCCA
CAAAGAGATGGAAAGGCGGTCAAAGACATTGGGTGACACAGCGGGCGAAGGCGCGACCCAGGCAGATCGAAAAAGAAAGCCCCTACCGTCGCATCAACTCCTCAACCAAA
AATCCTCCATTGCAGACCTCTCCAATTTTTATTCTTTCAAAGAGGACGCCAACCCTGATATTGGGGTCTCTAAACCACCACCGCCTGTTTTGGATACAAGAGATCATGTT
GATGACCCACATATCAAGGGCAAAACACCTATCCTTGATGATGCTGGCGAGACAGCCTCTTCGGCACACACCACCAATGTCCAAACTACTACCGCGTCGATAGAAGAAGA
AAATTTGGGCGACCTGTTAGGATCGCTTGTGTGTAAGTCAGTCTTTGATTGTTTTGATCAAGTCCTGGCTCACCAAGCTAATCAGGCGGAGCACCTCCAAGCCTTGAAGT
CCTTAGTTGACCAGTTGCAACGCCCTGCCCCCGAAACCCTTGTGACCCCCGCCTCTCAAGAAGAAGCCAATGATCTGAGGCGCGAGTTGAAGGATCTTTCGACGAGCAAC
GCGCAACTTTCAACCGTCGTATCCAACCTCACATCATTGGTCATTGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGCGGACCTGAGCGAACCAGTGGAGGAGATACCTGCGAAGTACAAGGCTTTAGAGCCAGAGAGAGACCTCGAGGTCATCGCTGAGGAACTCGAGGATGAGCTAGA
GGCGATGAGCCCAATTGAGCAAGGGCCACCACCTAAAAAGCAAAGGGAGGTGGCCGAACAATCAAAAGGGAAAAAGAAAATTGGGGACTTTGGACCTGAAGAGCACCCAA
TAGGCGGCGAAGCAAAAGTGAAAACACCCTCTATCAATTCACTCATAAAGGGGCACACCAAGCTAAGGATGGGTGTGGTGGAAAAATTCTATGCCGCTAAGATCAATGCT
GAGGAGTTTAGCGTGGAAATCAATGGAAGGGTGGTGAGCTTCAACGCGGAGGCCATTAGCGCTCAATATGACTTGCCCAATGATGTTGAGACGCCTGGGCATGAATACGT
GGTCAGCCCAACCAAGAAAATGGCCTTTGAAGCGTTGGAAGTCATCGCCTGGCCTGGGGCCGGATGGGAAGTTACGCCGACGGGGAAATATCAACTTTATCCACACCAGT
TGACCACAGAAGCAAGTAAGCGCGTCAACCTCGGCGATCTAATAGATACATCCATCCTGTCCTGGATGCGAGCTCCTAAGGGCGCCATGCCCTTCCAATCAACAGTTGAA
GCCCTCTATGTGAAGGTCGTGCCTTTTCTAAGTGCCATCAACTCAATGCCCATTCCAAACGGCCTGTGCAACCAGATATCTTTGAATCACATGATCACCTTCCATGCCCA
CAAAGAGATGGAAAGGCGGTCAAAGACATTGGGTGACACAGCGGGCGAAGGCGCGACCCAGGCAGATCGAAAAAGAAAGCCCCTACCGTCGCATCAACTCCTCAACCAAA
AATCCTCCATTGCAGACCTCTCCAATTTTTATTCTTTCAAAGAGGACGCCAACCCTGATATTGGGGTCTCTAAACCACCACCGCCTGTTTTGGATACAAGAGATCATGTT
GATGACCCACATATCAAGGGCAAAACACCTATCCTTGATGATGCTGGCGAGACAGCCTCTTCGGCACACACCACCAATGTCCAAACTACTACCGCGTCGATAGAAGAAGA
AAATTTGGGCGACCTGTTAGGATCGCTTGTGTGTAAGTCAGTCTTTGATTGTTTTGATCAAGTCCTGGCTCACCAAGCTAATCAGGCGGAGCACCTCCAAGCCTTGAAGT
CCTTAGTTGACCAGTTGCAACGCCCTGCCCCCGAAACCCTTGTGACCCCCGCCTCTCAAGAAGAAGCCAATGATCTGAGGCGCGAGTTGAAGGATCTTTCGACGAGCAAC
GCGCAACTTTCAACCGTCGTATCCAACCTCACATCATTGGTCATTGCTTAA
Protein sequenceShow/hide protein sequence
MFADLSEPVEEIPAKYKALEPERDLEVIAEELEDELEAMSPIEQGPPPKKQREVAEQSKGKKKIGDFGPEEHPIGGEAKVKTPSINSLIKGHTKLRMGVVEKFYAAKINA
EEFSVEINGRVVSFNAEAISAQYDLPNDVETPGHEYVVSPTKKMAFEALEVIAWPGAGWEVTPTGKYQLYPHQLTTEASKRVNLGDLIDTSILSWMRAPKGAMPFQSTVE
ALYVKVVPFLSAINSMPIPNGLCNQISLNHMITFHAHKEMERRSKTLGDTAGEGATQADRKRKPLPSHQLLNQKSSIADLSNFYSFKEDANPDIGVSKPPPPVLDTRDHV
DDPHIKGKTPILDDAGETASSAHTTNVQTTTASIEEENLGDLLGSLVCKSVFDCFDQVLAHQANQAEHLQALKSLVDQLQRPAPETLVTPASQEEANDLRRELKDLSTSN
AQLSTVVSNLTSLVIA