; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0028185 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028185
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr09:11932732..11933609
RNA-Seq ExpressionPI0028185
SyntenyPI0028185
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579028.1 hypothetical protein SDJN03_23476, partial [Cucurbita argyrosperma subsp. sororia]5.1e-8459.93Show/hide
Query:  MTPCKEIPINRDPPTTETPLPANAAGTGSQQTPQMLPTSNP-ASGSQMPSVTLTYNTFQQIIHGIVQNRGAHGIVQNRGAHSSAPSSQSVAVDNVKYARD
        M PC +IP++RDPP T T LP NA  +G   TP +L T+ P ASGSQ+PSV L+ +  QQII           +V+N GA SSAPSSQS  V N+ Y R+
Subjt:  MTPCKEIPINRDPPTTETPLPANAAGTGSQQTPQMLPTSNP-ASGSQMPSVTLTYNTFQQIIHGIVQNRGAHGIVQNRGAHSSAPSSQSVAVDNVKYARD

Query:  FISFDPPAFDGSSQDIDVAYEWIRDLESIFDLLKFQDEQRVRSAVFRLKGNAQNWW------------NHISWQEFKDMFLNWYCPEIIRKEKKMEFVKL
        FI FDPPAFD SS DIDVAY+WIRDLE +FDLLKF DEQRVR AVF+L+GNA+NWW            + ISW+EFKDMFL+W CP  +R EK+MEF+ L
Subjt:  FISFDPPAFDGSSQDIDVAYEWIRDLESIFDLLKFQDEQRVRSAVFRLKGNAQNWW------------NHISWQEFKDMFLNWYCPEIIRKEKKMEFVKL

Query:  RQGRMSVFDYENQFLRLSRFAPELVDMSSKMAHRFVMGLRKEIKGIVAIQNHKDLLSASQSARILEEGMAARSEPGQEHESCGRKKRKHQRI
        +QG MSV DY+ QFLRLSRFAPE+VD  SKM HRFVMGLRK I+G+VAIQNH D  SA + AR L+E M  +++PGQ+  S G +KRKHQRI
Subjt:  RQGRMSVFDYENQFLRLSRFAPELVDMSSKMAHRFVMGLRKEIKGIVAIQNHKDLLSASQSARILEEGMAARSEPGQEHESCGRKKRKHQRI

KAG7016551.1 hypothetical protein SDJN02_21660 [Cucurbita argyrosperma subsp. argyrosperma]5.1e-8459.93Show/hide
Query:  MTPCKEIPINRDPPTTETPLPANAAGTGSQQTPQMLPTSNP-ASGSQMPSVTLTYNTFQQIIHGIVQNRGAHGIVQNRGAHSSAPSSQSVAVDNVKYARD
        M PC +IP++RDPP T T LP NA  +G   TP +L T+ P ASGSQ+PSV L+ +  QQII           +V+N GA SSAPSSQS  V N+ Y R+
Subjt:  MTPCKEIPINRDPPTTETPLPANAAGTGSQQTPQMLPTSNP-ASGSQMPSVTLTYNTFQQIIHGIVQNRGAHGIVQNRGAHSSAPSSQSVAVDNVKYARD

Query:  FISFDPPAFDGSSQDIDVAYEWIRDLESIFDLLKFQDEQRVRSAVFRLKGNAQNWW------------NHISWQEFKDMFLNWYCPEIIRKEKKMEFVKL
        FI FDPPAFD SS DIDVAY+WIRDLE +FDLLKF DEQRVR AVF+L+GNA+NWW            + ISW+EFKDMFL+W CP  +R EK+MEF+ L
Subjt:  FISFDPPAFDGSSQDIDVAYEWIRDLESIFDLLKFQDEQRVRSAVFRLKGNAQNWW------------NHISWQEFKDMFLNWYCPEIIRKEKKMEFVKL

Query:  RQGRMSVFDYENQFLRLSRFAPELVDMSSKMAHRFVMGLRKEIKGIVAIQNHKDLLSASQSARILEEGMAARSEPGQEHESCGRKKRKHQRI
        +QG MSV DY+ QFLRLSRFAPE+VD  SKM HRFVMGLRK I+G+VAIQNH D  SA + AR L+E M  +++PGQ+  S G +KRKHQRI
Subjt:  RQGRMSVFDYENQFLRLSRFAPELVDMSSKMAHRFVMGLRKEIKGIVAIQNHKDLLSASQSARILEEGMAARSEPGQEHESCGRKKRKHQRI

XP_022939066.1 uncharacterized protein LOC111445078 [Cucurbita moschata]6.6e-8459.93Show/hide
Query:  MTPCKEIPINRDPPTTETPLPANAAGTGSQQTPQMLPTSNP-ASGSQMPSVTLTYNTFQQIIHGIVQNRGAHGIVQNRGAHSSAPSSQSVAVDNVKYARD
        M PC +IP++RDPP T T LP NA  +G   TP +L T+ P ASGSQ+PSV L+ +  QQII           +V+N GA SSAPSSQS  V N+ Y R+
Subjt:  MTPCKEIPINRDPPTTETPLPANAAGTGSQQTPQMLPTSNP-ASGSQMPSVTLTYNTFQQIIHGIVQNRGAHGIVQNRGAHSSAPSSQSVAVDNVKYARD

Query:  FISFDPPAFDGSSQDIDVAYEWIRDLESIFDLLKFQDEQRVRSAVFRLKGNAQNWW------------NHISWQEFKDMFLNWYCPEIIRKEKKMEFVKL
        FI FDPPAFD SS DIDVAY+WIRDLE +FDLLKF DEQRVR AVF+L+GNA+NWW            + ISW+EFKDMFL+W CP  +R EK+MEF+ L
Subjt:  FISFDPPAFDGSSQDIDVAYEWIRDLESIFDLLKFQDEQRVRSAVFRLKGNAQNWW------------NHISWQEFKDMFLNWYCPEIIRKEKKMEFVKL

Query:  RQGRMSVFDYENQFLRLSRFAPELVDMSSKMAHRFVMGLRKEIKGIVAIQNHKDLLSASQSARILEEGMAARSEPGQEHESCGRKKRKHQRI
        +QG MSV DY+ QFLRLSRFAPE+VD  SKM HRFVMGLRK I+G+VAIQNH D  SA + AR L+E M  ++ PGQ+  S G +KRKHQRI
Subjt:  RQGRMSVFDYENQFLRLSRFAPELVDMSSKMAHRFVMGLRKEIKGIVAIQNHKDLLSASQSARILEEGMAARSEPGQEHESCGRKKRKHQRI

XP_022992879.1 uncharacterized protein LOC111489080 [Cucurbita maxima]2.3e-8460.27Show/hide
Query:  MTPCKEIPINRDPPTTETPLPANAAGTGSQQTPQMLPTSNP-ASGSQMPSVTLTYNTFQQIIHGIVQNRGAHGIVQNRGAHSSAPSSQSVAVDNVKYARD
        M PC +IP++RDPP T T LP NA  +G  QTP +L T+ P ASGSQ+PSV L+ +  QQII           +V+N GA SSAPSSQS  V N+ YAR+
Subjt:  MTPCKEIPINRDPPTTETPLPANAAGTGSQQTPQMLPTSNP-ASGSQMPSVTLTYNTFQQIIHGIVQNRGAHGIVQNRGAHSSAPSSQSVAVDNVKYARD

Query:  FISFDPPAFDGSSQDIDVAYEWIRDLESIFDLLKFQDEQRVRSAVFRLKGNAQNWW------------NHISWQEFKDMFLNWYCPEIIRKEKKMEFVKL
        FI FDPPAFD SS DIDVAY+WIRDLE +FDLLKF DEQRVR AVF+L+GNA+NWW            + ISW+EFKDMFL W CP  +R EK+MEF+ L
Subjt:  FISFDPPAFDGSSQDIDVAYEWIRDLESIFDLLKFQDEQRVRSAVFRLKGNAQNWW------------NHISWQEFKDMFLNWYCPEIIRKEKKMEFVKL

Query:  RQGRMSVFDYENQFLRLSRFAPELVDMSSKMAHRFVMGLRKEIKGIVAIQNHKDLLSASQSARILEEGMAARSEPGQEHESCGRKKRKHQRI
        +QG MSV DY+ QFLRL RFAPE+VD  SKM HRFVMGLRK I+G+VAIQNH D  SA + AR L+E M  +++PGQ+  S G +KRKHQRI
Subjt:  RQGRMSVFDYENQFLRLSRFAPELVDMSSKMAHRFVMGLRKEIKGIVAIQNHKDLLSASQSARILEEGMAARSEPGQEHESCGRKKRKHQRI

XP_023550797.1 uncharacterized protein LOC111808829 [Cucurbita pepo subsp. pepo]1.5e-8359.59Show/hide
Query:  MTPCKEIPINRDPPTTETPLPANAAGTGSQQTPQMLPTSNP-ASGSQMPSVTLTYNTFQQIIHGIVQNRGAHGIVQNRGAHSSAPSSQSVAVDNVKYARD
        M PC +IP +RDPP TET LP NAA +G  QTP +L T+ P A+GS +PSV L+ +  QQII           +V+N GA SSAPSSQS  + N+ YAR+
Subjt:  MTPCKEIPINRDPPTTETPLPANAAGTGSQQTPQMLPTSNP-ASGSQMPSVTLTYNTFQQIIHGIVQNRGAHGIVQNRGAHSSAPSSQSVAVDNVKYARD

Query:  FISFDPPAFDGSSQDIDVAYEWIRDLESIFDLLKFQDEQRVRSAVFRLKGNAQNWW------------NHISWQEFKDMFLNWYCPEIIRKEKKMEFVKL
        FI +DPPAFD SS DIDVAY+WIRDLE +FDLLKF DEQRVR AVF+L+GNA+NWW            + ISW+EFKDMFL W CP  +R EK+MEF+ L
Subjt:  FISFDPPAFDGSSQDIDVAYEWIRDLESIFDLLKFQDEQRVRSAVFRLKGNAQNWW------------NHISWQEFKDMFLNWYCPEIIRKEKKMEFVKL

Query:  RQGRMSVFDYENQFLRLSRFAPELVDMSSKMAHRFVMGLRKEIKGIVAIQNHKDLLSASQSARILEEGMAARSEPGQEHESCGRKKRKHQRI
        +QG MSV DY+ QFLRLSRFAPE+VD  +KM HRFVMGLRK I+G+VAIQNH D  SA + AR L+E M  +++PGQ+  S G +KRKHQRI
Subjt:  RQGRMSVFDYENQFLRLSRFAPELVDMSSKMAHRFVMGLRKEIKGIVAIQNHKDLLSASQSARILEEGMAARSEPGQEHESCGRKKRKHQRI

TrEMBL top hitse value%identityAlignment
A0A2N9IXV4 Reverse transcriptase2.7e-2733.62Show/hide
Query:  SGSQMPSVTLTYNTFQQIIHGIVQNRGAHGIVQNRGAHSSAPSSQSVAVDNVKYARDFISFDPPAFDGSSQDIDVAYEWIRDLESIFDLLKFQDEQRVRS
        SG+ +PS   T +  Q II  I             G+ +     Q  A + +     F   DPP+F GS   ++ A  W+++L+ +F ++  +DEQRV  
Subjt:  SGSQMPSVTLTYNTFQQIIHGIVQNRGAHGIVQNRGAHSSAPSSQSVAVDNVKYARDFISFDPPAFDGSSQDIDVAYEWIRDLESIFDLLKFQDEQRVRS

Query:  AVFRLKGNAQNWWNH---------ISWQEFKDMFLNWYCPEIIRKEKKMEFVKLRQGRMSVFDYENQFLRLSRFAPELVDMSSKMAHRFVMGLRKEIKGI
        AVF LKG+A  WW           +SWQ+F D+F   Y P+ +R +K+ EF+++ QG  SV++YE +F  LSRFAP +VD+  + A  F  GLR+EI+G 
Subjt:  AVFRLKGNAQNWWNH---------ISWQEFKDMFLNWYCPEIIRKEKKMEFVKLRQGRMSVFDYENQFLRLSRFAPELVDMSSKMAHRFVMGLRKEIKGI

Query:  VAIQNHKDLLSASQSARILEEGMAARSEPGQE
        V++   +        A I E      S+   E
Subjt:  VAIQNHKDLLSASQSARILEEGMAARSEPGQE

A0A6J1DQB9 Reverse transcriptase1.5e-2832.03Show/hide
Query:  NRDPPTTETPLPANAAGTGSQQTPQMLPTSNPASGSQMPSVTLTYNTFQQIIHGIVQNRGAHGIVQNRGAHSSAPSSQSVAVDNVKYARDFISFDPPAFD
        N   P     +P        Q  PQ +P  N       P V L     Q ++H    N    G     GA    P    +  D V++ RDF  F PP F+
Subjt:  NRDPPTTETPLPANAAGTGSQQTPQMLPTSNPASGSQMPSVTLTYNTFQQIIHGIVQNRGAHGIVQNRGAHSSAPSSQSVAVDNVKYARDFISFDPPAFD

Query:  GSSQDIDVAYEWIRDLESIFDLLKFQDEQRVRSAVFRLKGNAQNWWNH-----------ISWQEFKDMFLNWYCPEIIRKEKKMEFVKLRQGRMSVFDYE
        G S+    A EW+R+LE+++  L   D+ +VR AVF L+G A NWW             ++W  FKD+   +Y P I R EK++EF++L QG ++V  YE
Subjt:  GSSQDIDVAYEWIRDLESIFDLLKFQDEQRVRSAVFRLKGNAQNWWNH-----------ISWQEFKDMFLNWYCPEIIRKEKKMEFVKLRQGRMSVFDYE

Query:  NQFLRLSRFAPELVDMSSKMAHRFVMGLRKEIKGIVAIQNHKDLLSASQSARILEE
         +F  LSRF  + V        +F+ GLR+EIKG++ ++      +A + A ++++
Subjt:  NQFLRLSRFAPELVDMSSKMAHRFVMGLRKEIKGIVAIQNHKDLLSASQSARILEE

A0A6J1DUM2 uncharacterized protein LOC1110232474.7e-2733.97Show/hide
Query:  GAHSSAPSSQSVAVDNVKYARDFISFDPPAFDGSSQDIDVAYEWIRDLESIFDLLKFQDEQRVRSAVFRLKGNAQNWWNHIS-----------WQEFKDM
        G  +  P          ++ +DF  + PP FDG S+      EWIR+LE+++  L  +D+ +V+ AVF L+G A NWW+ ++           W  FK++
Subjt:  GAHSSAPSSQSVAVDNVKYARDFISFDPPAFDGSSQDIDVAYEWIRDLESIFDLLKFQDEQRVRSAVFRLKGNAQNWWNHIS-----------WQEFKDM

Query:  FLNWYCPEIIRKEKKMEFVKLRQGRMSVFDYENQFLRLSRFAPELVDMSSKMAHRFVMGLRKEIKGIVAIQNHKDLLSASQSARILEEGMAARSEPGQEH
          ++Y PE ++  K+ EF+ L QG +SV  YE +F  LSRFA EL+   +    RFV GLRK I+G V +Q       A + A ++++ ++ ++ P  E 
Subjt:  FLNWYCPEIIRKEKKMEFVKLRQGRMSVFDYENQFLRLSRFAPELVDMSSKMAHRFVMGLRKEIKGIVAIQNHKDLLSASQSARILEEGMAARSEPGQEH

Query:  ESCGRKKRK
         S    KRK
Subjt:  ESCGRKKRK

A0A6J1FEV9 uncharacterized protein LOC1114450783.2e-8459.93Show/hide
Query:  MTPCKEIPINRDPPTTETPLPANAAGTGSQQTPQMLPTSNP-ASGSQMPSVTLTYNTFQQIIHGIVQNRGAHGIVQNRGAHSSAPSSQSVAVDNVKYARD
        M PC +IP++RDPP T T LP NA  +G   TP +L T+ P ASGSQ+PSV L+ +  QQII           +V+N GA SSAPSSQS  V N+ Y R+
Subjt:  MTPCKEIPINRDPPTTETPLPANAAGTGSQQTPQMLPTSNP-ASGSQMPSVTLTYNTFQQIIHGIVQNRGAHGIVQNRGAHSSAPSSQSVAVDNVKYARD

Query:  FISFDPPAFDGSSQDIDVAYEWIRDLESIFDLLKFQDEQRVRSAVFRLKGNAQNWW------------NHISWQEFKDMFLNWYCPEIIRKEKKMEFVKL
        FI FDPPAFD SS DIDVAY+WIRDLE +FDLLKF DEQRVR AVF+L+GNA+NWW            + ISW+EFKDMFL+W CP  +R EK+MEF+ L
Subjt:  FISFDPPAFDGSSQDIDVAYEWIRDLESIFDLLKFQDEQRVRSAVFRLKGNAQNWW------------NHISWQEFKDMFLNWYCPEIIRKEKKMEFVKL

Query:  RQGRMSVFDYENQFLRLSRFAPELVDMSSKMAHRFVMGLRKEIKGIVAIQNHKDLLSASQSARILEEGMAARSEPGQEHESCGRKKRKHQRI
        +QG MSV DY+ QFLRLSRFAPE+VD  SKM HRFVMGLRK I+G+VAIQNH D  SA + AR L+E M  ++ PGQ+  S G +KRKHQRI
Subjt:  RQGRMSVFDYENQFLRLSRFAPELVDMSSKMAHRFVMGLRKEIKGIVAIQNHKDLLSASQSARILEEGMAARSEPGQEHESCGRKKRKHQRI

A0A6J1JYP6 uncharacterized protein LOC1114890801.1e-8460.27Show/hide
Query:  MTPCKEIPINRDPPTTETPLPANAAGTGSQQTPQMLPTSNP-ASGSQMPSVTLTYNTFQQIIHGIVQNRGAHGIVQNRGAHSSAPSSQSVAVDNVKYARD
        M PC +IP++RDPP T T LP NA  +G  QTP +L T+ P ASGSQ+PSV L+ +  QQII           +V+N GA SSAPSSQS  V N+ YAR+
Subjt:  MTPCKEIPINRDPPTTETPLPANAAGTGSQQTPQMLPTSNP-ASGSQMPSVTLTYNTFQQIIHGIVQNRGAHGIVQNRGAHSSAPSSQSVAVDNVKYARD

Query:  FISFDPPAFDGSSQDIDVAYEWIRDLESIFDLLKFQDEQRVRSAVFRLKGNAQNWW------------NHISWQEFKDMFLNWYCPEIIRKEKKMEFVKL
        FI FDPPAFD SS DIDVAY+WIRDLE +FDLLKF DEQRVR AVF+L+GNA+NWW            + ISW+EFKDMFL W CP  +R EK+MEF+ L
Subjt:  FISFDPPAFDGSSQDIDVAYEWIRDLESIFDLLKFQDEQRVRSAVFRLKGNAQNWW------------NHISWQEFKDMFLNWYCPEIIRKEKKMEFVKL

Query:  RQGRMSVFDYENQFLRLSRFAPELVDMSSKMAHRFVMGLRKEIKGIVAIQNHKDLLSASQSARILEEGMAARSEPGQEHESCGRKKRKHQRI
        +QG MSV DY+ QFLRL RFAPE+VD  SKM HRFVMGLRK I+G+VAIQNH D  SA + AR L+E M  +++PGQ+  S G +KRKHQRI
Subjt:  RQGRMSVFDYENQFLRLSRFAPELVDMSSKMAHRFVMGLRKEIKGIVAIQNHKDLLSASQSARILEEGMAARSEPGQEHESCGRKKRKHQRI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACCCTGCAAAGAGATTCCCATAAATCGGGATCCACCAACAACTGAGACACCTTTGCCTGCCAATGCTGCAGGAACTGGATCACAACAGACACCACAAATGTTGCC
AACCTCCAACCCTGCTTCTGGATCGCAGATGCCATCTGTAACTCTTACCTACAACACATTCCAACAGATCATACATGGTATAGTTCAGAATCGTGGGGCACATGGTATAG
TTCAGAATCGTGGGGCACACTCTTCTGCACCATCCTCTCAGTCTGTTGCGGTGGACAACGTAAAATATGCCCGTGACTTCATTAGTTTTGATCCTCCTGCCTTTGATGGT
AGCTCGCAAGATATAGATGTTGCATACGAGTGGATAAGGGATCTTGAATCAATATTTGATTTATTGAAGTTTCAGGATGAGCAAAGGGTTAGAAGTGCAGTGTTTAGGCT
AAAAGGGAATGCTCAAAACTGGTGGAATCATATTTCATGGCAAGAGTTCAAGGATATGTTTCTCAATTGGTATTGCCCTGAGATTATCAGGAAAGAGAAAAAGATGGAGT
TTGTGAAGTTAAGGCAAGGCCGTATGAGTGTGTTTGACTACGAGAATCAATTTTTGAGGCTATCACGTTTTGCTCCAGAATTAGTGGATATGTCGTCAAAAATGGCACAT
CGTTTTGTTATGGGTCTTCGGAAAGAGATCAAAGGAATAGTGGCCATCCAAAATCACAAGGACCTTCTTTCAGCTTCTCAGTCGGCTCGAATTTTGGAGGAGGGCATGGC
AGCTAGATCTGAGCCAGGACAAGAACATGAATCATGTGGACGAAAGAAGAGGAAGCATCAACGGATTGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACACCCTGCAAAGAGATTCCCATAAATCGGGATCCACCAACAACTGAGACACCTTTGCCTGCCAATGCTGCAGGAACTGGATCACAACAGACACCACAAATGTTGCC
AACCTCCAACCCTGCTTCTGGATCGCAGATGCCATCTGTAACTCTTACCTACAACACATTCCAACAGATCATACATGGTATAGTTCAGAATCGTGGGGCACATGGTATAG
TTCAGAATCGTGGGGCACACTCTTCTGCACCATCCTCTCAGTCTGTTGCGGTGGACAACGTAAAATATGCCCGTGACTTCATTAGTTTTGATCCTCCTGCCTTTGATGGT
AGCTCGCAAGATATAGATGTTGCATACGAGTGGATAAGGGATCTTGAATCAATATTTGATTTATTGAAGTTTCAGGATGAGCAAAGGGTTAGAAGTGCAGTGTTTAGGCT
AAAAGGGAATGCTCAAAACTGGTGGAATCATATTTCATGGCAAGAGTTCAAGGATATGTTTCTCAATTGGTATTGCCCTGAGATTATCAGGAAAGAGAAAAAGATGGAGT
TTGTGAAGTTAAGGCAAGGCCGTATGAGTGTGTTTGACTACGAGAATCAATTTTTGAGGCTATCACGTTTTGCTCCAGAATTAGTGGATATGTCGTCAAAAATGGCACAT
CGTTTTGTTATGGGTCTTCGGAAAGAGATCAAAGGAATAGTGGCCATCCAAAATCACAAGGACCTTCTTTCAGCTTCTCAGTCGGCTCGAATTTTGGAGGAGGGCATGGC
AGCTAGATCTGAGCCAGGACAAGAACATGAATCATGTGGACGAAAGAAGAGGAAGCATCAACGGATTGGTTGA
Protein sequenceShow/hide protein sequence
MTPCKEIPINRDPPTTETPLPANAAGTGSQQTPQMLPTSNPASGSQMPSVTLTYNTFQQIIHGIVQNRGAHGIVQNRGAHSSAPSSQSVAVDNVKYARDFISFDPPAFDG
SSQDIDVAYEWIRDLESIFDLLKFQDEQRVRSAVFRLKGNAQNWWNHISWQEFKDMFLNWYCPEIIRKEKKMEFVKLRQGRMSVFDYENQFLRLSRFAPELVDMSSKMAH
RFVMGLRKEIKGIVAIQNHKDLLSASQSARILEEGMAARSEPGQEHESCGRKKRKHQRIG