; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0028212 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028212
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:15686751..15691848
RNA-Seq ExpressionPI0028212
SyntenyPI0028212
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032798.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.2e-7176.6Show/hide
Query:  RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANII
        RN V AAA GALADKTP EARELI RMAENS +FGNRA +LDNSLTKEVS+LKSQMLNMTTLLTSFVQG  LKVTKCGVCGLVG+PNDKCP +IED NI+
Subjt:  RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANII

Query:  RKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDKLPAQPNHAN
        R+YDPHGN+YN GWR+NP LRWGNDNQK TQA  +SSN          +ATNTLSFQQEMKQQMTQLTT +SK++GK KLPAQP+H N
Subjt:  RKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDKLPAQPNHAN
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.8e-7278.84Show/hide
Query:  RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANII
        RNTV A A GALADK PTEARELIS+MAENS SF NRA +LDNSLTKEVS+LKSQMLNMTTLLTSFVQG  LKVTKCGVCGLVGHPNDKCP +IED NI+
Subjt:  RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANII

Query:  RKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDKLPAQPNHAN
        RKYDPHGN+YNSGWR+NP LRWGNDNQK TQA S+SSN           +ATNTLSFQQEMKQQMTQLTTAISK++GK KL AQ N+AN
Subjt:  RKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDKLPAQPNHAN
KAA0056048.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-7277.78Show/hide
Query:  RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANII
        RNTV  A  GALADKTPTEARELISRMAENS SFGNRA KLDNSLTKEVS+LKSQMLNMTTLLTSFVQG  LKVTKCGVCGLVGHPNDKCP +IED N++
Subjt:  RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANII

Query:  RKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDKLPAQPNHAN
        R+YDPHGN+ NSGWR+NP  RWGNDNQK TQ   +SSN           +A NTLSFQQEMKQQ+TQLTTAISK++GK KLPAQPNHAN
Subjt:  RKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDKLPAQPNHAN
KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.4e-7176.72Show/hide
Query:  RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANII
        RNT+   A GALADKTPTEARELISRM ENS SFGNRA +LDNSLTKEVS+LKSQMLNMTTLLTSFVQG   KVTKCGVCGLVGHPNDKC  +IED NI+
Subjt:  RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANII

Query:  RKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDKLPAQPNHAN
        R+YDPH N+YNSGWR+NP LRWGNDNQK TQA S+SSN           + TNTLSFQQEMKQQMTQLTTAISK++GK KLPAQP++AN
Subjt:  RKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDKLPAQPNHAN
TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.8e-7270Show/hide
Query:  KEEELLEMFRKVQTDLPLLDAIQ-----QVSRNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQG
        +E   +   RK +  +P L   +     + SRNT+  AA GALADKTPTEARELISRMAENS SFGNRA +LDNSLTKEVS+LKSQMLNMTTLLTSFVQG
Subjt:  KEEELLEMFRKVQTDLPLLDAIQ-----QVSRNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQG

Query:  GNLKVTKCGVCGLVGHPNDKCPNLIEDANIIRKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLT
           KVTKCGVCGLVGHPNDKCP +IED NI+R+YDPH N+YNSGWR+N  LRWGNDNQK TQA S+SSN           +ATNTLSFQQ+MKQQMTQLT
Subjt:  GNLKVTKCGVCGLVGHPNDKCPNLIEDANIIRKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLT

Query:  TAISKLEGKDKLPAQPNHAN
        TAISK++GK KLPAQP+HAN
Subjt:  TAISKLEGKDKLPAQPNHAN
TrEMBL top hitse value%identityAlignment
A0A5A7SQH8 Retrotransposon gag protein3.5e-7176.6Show/hide
Query:  RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANII
        RN V AAA GALADKTP EARELI RMAENS +FGNRA +LDNSLTKEVS+LKSQMLNMTTLLTSFVQG  LKVTKCGVCGLVG+PNDKCP +IED NI+
Subjt:  RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANII

Query:  RKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDKLPAQPNHAN
        R+YDPHGN+YN GWR+NP LRWGNDNQK TQA  +SSN          +ATNTLSFQQEMKQQMTQLTT +SK++GK KLPAQP+H N
Subjt:  RKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDKLPAQPNHAN
A0A5A7ULU1 Retrotransposon gag protein1.1e-7277.78Show/hide
Query:  RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANII
        RNTV  A  GALADKTPTEARELISRMAENS SFGNRA KLDNSLTKEVS+LKSQMLNMTTLLTSFVQG  LKVTKCGVCGLVGHPNDKCP +IED N++
Subjt:  RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANII

Query:  RKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDKLPAQPNHAN
        R+YDPHGN+ NSGWR+NP  RWGNDNQK TQ   +SSN           +A NTLSFQQEMKQQ+TQLTTAISK++GK KLPAQPNHAN
Subjt:  RKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDKLPAQPNHAN
A0A5A7V0Q7 Retrotransposon gag protein4.5e-7176.72Show/hide
Query:  RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANII
        RNT+   A GALADKTPTEARELISRM ENS SFGNRA +LDNSLTKEVS+LKSQMLNMTTLLTSFVQG   KVTKCGVCGLVGHPNDKC  +IED NI+
Subjt:  RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANII

Query:  RKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDKLPAQPNHAN
        R+YDPH N+YNSGWR+NP LRWGNDNQK TQA S+SSN           + TNTLSFQQEMKQQMTQLTTAISK++GK KLPAQP++AN
Subjt:  RKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDKLPAQPNHAN
A0A5D3CB46 Retrotransposon gag protein1.8e-7270Show/hide
Query:  KEEELLEMFRKVQTDLPLLDAIQ-----QVSRNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQG
        +E   +   RK +  +P L   +     + SRNT+  AA GALADKTPTEARELISRMAENS SFGNRA +LDNSLTKEVS+LKSQMLNMTTLLTSFVQG
Subjt:  KEEELLEMFRKVQTDLPLLDAIQ-----QVSRNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQG

Query:  GNLKVTKCGVCGLVGHPNDKCPNLIEDANIIRKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLT
           KVTKCGVCGLVGHPNDKCP +IED NI+R+YDPH N+YNSGWR+N  LRWGNDNQK TQA S+SSN           +ATNTLSFQQ+MKQQMTQLT
Subjt:  GNLKVTKCGVCGLVGHPNDKCPNLIEDANIIRKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLT

Query:  TAISKLEGKDKLPAQPNHAN
        TAISK++GK KLPAQP+HAN
Subjt:  TAISKLEGKDKLPAQPNHAN
A0A5D3CRR8 Retrotransposon gag protein1.8e-7278.84Show/hide
Query:  RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANII
        RNTV A A GALADK PTEARELIS+MAENS SF NRA +LDNSLTKEVS+LKSQMLNMTTLLTSFVQG  LKVTKCGVCGLVGHPNDKCP +IED NI+
Subjt:  RNTVHAAAEGALADKTPTEARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANII

Query:  RKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDKLPAQPNHAN
        RKYDPHGN+YNSGWR+NP LRWGNDNQK TQA S+SSN           +ATNTLSFQQEMKQQMTQLTTAISK++GK KL AQ N+AN
Subjt:  RKYDPHGNSYNSGWRNNPILRWGNDNQKPTQATSSSSN-----------IATNTLSFQQEMKQQMTQLTTAISKLEGKDKLPAQPNHAN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCAGAAGGCGATGAAGAGCCCATCACCGCGAAGAACGTCTTTAAACATTTCAAGATAGAGAAGAGGCTCTATCCCGCGAGAGGCGTTCTGCCAGCCTTCATCTC
CACACCCATTCGCGCGTTCAAGTGGAAAAAGTTTTTCGAAAGGGTGACGGAGTTAAGGCCGGACGTAGTCAAGCTGTTTTACAAAGGGTTTATTGATCACGATGGTGACT
ACGCGGTGGTGAGGCAAAGAAGAGTCCACTTTCGGGCTGCAGCTATCAACGCGTTCTTCGAGCTGGAGAACAACGAAGTGGGGCAAATTATTTTCAAGAACCCCACTTCG
CAAGATAAGGAAGACGCGTTGAAGAGGATCGCATGGCTTGGGACAAAATGGGATATAACGCCAACCGGGAAGTACCAGCTCTTCGCGCATAATTTGAACACCGAAGCAAG
CGTCTGGTACTTCTTCGTGAAGAAGAAAATCATGCCATCACGCCACGACAGCACTATCGCCTGGAACACGATTGATGCAGCAGCGGGAGGAGCTCTAGGCAACAAAACCC
CCACTGAGGCAAGAGAGCTCATCTCTAGAATGGCGGAGAACTCTCAAAGTTTTGGGAATAGAGGATCGGAACTTGACAATTCTCTAACAAAAGAGCCCACCCAAGCAACA
TCCTCTTCTTCGAACCAAGGTATGAATCTTAAAGATATAGTCAAAGCTTTAGCTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAACGACTCAACTTACTAC
CGTCATAAGCAAGTTGGAAGTAAAAGGCAAGCTTCTGCCCAACCGGACCATGCAAATGTTCGCTCCAAAGAAGAAGGAAACACCCAAGGAAGAAGAACTTTTGGAGATGT
TTAGAAAGGTGCAAACCGACTTGCCCCTATTAGATGCAATCCAACAAGTGTCAAGGAACACGGTTCATGCGGCGGCGGAAGGAGCTCTAGCCGACAAAACTCCCACTGAA
GCGAGAGAGCTCATCTCTAGAATGGCGGAGAACTCTCATAGTTTTGGGAATAGAGCATTGAAACTTGACAACTCTCTAACAAAAGAGGTAAGTAAATTAAAATCTCAAAT
GCTAAATATGACAACTCTTCTTACTTCTTTTGTGCAAGGTGGTAATCTCAAAGTAACCAAGTGTGGAGTTTGTGGCTTGGTTGGACATCCCAATGATAAATGCCCGAACT
TGATCGAGGATGCGAATATCATTCGTAAGTATGACCCCCACGGTAATTCATATAATTCGGGATGGAGAAACAACCCAATCTTGAGATGGGGGAATGACAACCAAAAGCCC
ACTCAAGCAACATCCTCCTCTTCAAACATAGCTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTTACTACTGCCATAAGCAAGTTGGAAGG
AAAGGACAAGCTTCCGGCCCAACCGAACCATGCAAACTATAAGCGGAGCAAGAGGTTTCCTTGCAAGGCCAGGGTCGAACACAGGGAATTTCTATCAAAGGAGCTAAGTG
AAATGCGTGTTTACCAGGCGGATATGATACTAGACCCCCACACAAGCTCTAAGACACAAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCAGAAGGCGATGAAGAGCCCATCACCGCGAAGAACGTCTTTAAACATTTCAAGATAGAGAAGAGGCTCTATCCCGCGAGAGGCGTTCTGCCAGCCTTCATCTC
CACACCCATTCGCGCGTTCAAGTGGAAAAAGTTTTTCGAAAGGGTGACGGAGTTAAGGCCGGACGTAGTCAAGCTGTTTTACAAAGGGTTTATTGATCACGATGGTGACT
ACGCGGTGGTGAGGCAAAGAAGAGTCCACTTTCGGGCTGCAGCTATCAACGCGTTCTTCGAGCTGGAGAACAACGAAGTGGGGCAAATTATTTTCAAGAACCCCACTTCG
CAAGATAAGGAAGACGCGTTGAAGAGGATCGCATGGCTTGGGACAAAATGGGATATAACGCCAACCGGGAAGTACCAGCTCTTCGCGCATAATTTGAACACCGAAGCAAG
CGTCTGGTACTTCTTCGTGAAGAAGAAAATCATGCCATCACGCCACGACAGCACTATCGCCTGGAACACGATTGATGCAGCAGCGGGAGGAGCTCTAGGCAACAAAACCC
CCACTGAGGCAAGAGAGCTCATCTCTAGAATGGCGGAGAACTCTCAAAGTTTTGGGAATAGAGGATCGGAACTTGACAATTCTCTAACAAAAGAGCCCACCCAAGCAACA
TCCTCTTCTTCGAACCAAGGTATGAATCTTAAAGATATAGTCAAAGCTTTAGCTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAACGACTCAACTTACTAC
CGTCATAAGCAAGTTGGAAGTAAAAGGCAAGCTTCTGCCCAACCGGACCATGCAAATGTTCGCTCCAAAGAAGAAGGAAACACCCAAGGAAGAAGAACTTTTGGAGATGT
TTAGAAAGGTGCAAACCGACTTGCCCCTATTAGATGCAATCCAACAAGTGTCAAGGAACACGGTTCATGCGGCGGCGGAAGGAGCTCTAGCCGACAAAACTCCCACTGAA
GCGAGAGAGCTCATCTCTAGAATGGCGGAGAACTCTCATAGTTTTGGGAATAGAGCATTGAAACTTGACAACTCTCTAACAAAAGAGGTAAGTAAATTAAAATCTCAAAT
GCTAAATATGACAACTCTTCTTACTTCTTTTGTGCAAGGTGGTAATCTCAAAGTAACCAAGTGTGGAGTTTGTGGCTTGGTTGGACATCCCAATGATAAATGCCCGAACT
TGATCGAGGATGCGAATATCATTCGTAAGTATGACCCCCACGGTAATTCATATAATTCGGGATGGAGAAACAACCCAATCTTGAGATGGGGGAATGACAACCAAAAGCCC
ACTCAAGCAACATCCTCCTCTTCAAACATAGCTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTTACTACTGCCATAAGCAAGTTGGAAGG
AAAGGACAAGCTTCCGGCCCAACCGAACCATGCAAACTATAAGCGGAGCAAGAGGTTTCCTTGCAAGGCCAGGGTCGAACACAGGGAATTTCTATCAAAGGAGCTAAGTG
AAATGCGTGTTTACCAGGCGGATATGATACTAGACCCCCACACAAGCTCTAAGACACAAAAATGA
Protein sequenceShow/hide protein sequence
MAPEGDEEPITAKNVFKHFKIEKRLYPARGVLPAFISTPIRAFKWKKFFERVTELRPDVVKLFYKGFIDHDGDYAVVRQRRVHFRAAAINAFFELENNEVGQIIFKNPTS
QDKEDALKRIAWLGTKWDITPTGKYQLFAHNLNTEASVWYFFVKKKIMPSRHDSTIAWNTIDAAAGGALGNKTPTEARELISRMAENSQSFGNRGSELDNSLTKEPTQAT
SSSSNQGMNLKDIVKALATNTLSFQQEMKQQTTQLTTVISKLEVKGKLLPNRTMQMFAPKKKETPKEEELLEMFRKVQTDLPLLDAIQQVSRNTVHAAAEGALADKTPTE
ARELISRMAENSHSFGNRALKLDNSLTKEVSKLKSQMLNMTTLLTSFVQGGNLKVTKCGVCGLVGHPNDKCPNLIEDANIIRKYDPHGNSYNSGWRNNPILRWGNDNQKP
TQATSSSSNIATNTLSFQQEMKQQMTQLTTAISKLEGKDKLPAQPNHANYKRSKRFPCKARVEHREFLSKELSEMRVYQADMILDPHTSSKTQK