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PI0028216 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028216
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr12:11259249..11260723
RNA-Seq ExpressionPI0028216
SyntenyPI0028216
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046065.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.5e-1268.75Show/hide
Query:  QIIKQQMSQLTNAINKLEGKGKLPAQPDHANVSAISLRSGKILETPPSDE-KVPSIPILLVDEN
        Q +KQQM+QLT AI+K++GKGKLPAQP+HANVSAISLRSGKIL+TP + E KV S P+ L  +N
Subjt:  QIIKQQMSQLTNAINKLEGKGKLPAQPDHANVSAISLRSGKILETPPSDE-KVPSIPILLVDEN
KAA0060357.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.9e-1268.75Show/hide
Query:  QIIKQQMSQLTNAINKLEGKGKLPAQPDHANVSAISLRSGKILETPPSDE-KVPSIPILLVDEN
        Q +KQQM+QLT AI+K++GKGKLPAQPDHANVS ISLRSGKIL+TP + E KV S P+ L  +N
Subjt:  QIIKQQMSQLTNAINKLEGKGKLPAQPDHANVSAISLRSGKILETPPSDE-KVPSIPILLVDEN
KAA0062400.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.7e-1370.31Show/hide
Query:  QIIKQQMSQLTNAINKLEGKGKLPAQPDHANVSAISLRSGKILETPPSDE-KVPSIPILLVDEN
        Q +KQQM+QLT AI+K++GKGKLPAQPDHANVSAISLRSGKIL+TP + E KV S P+ L  +N
Subjt:  QIIKQQMSQLTNAINKLEGKGKLPAQPDHANVSAISLRSGKILETPPSDE-KVPSIPILLVDEN
TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-1268.75Show/hide
Query:  QIIKQQMSQLTNAINKLEGKGKLPAQPDHANVSAISLRSGKILETPPSDE-KVPSIPILLVDEN
        Q +KQQM+QLT AI+K++GKGKLPAQPDHANVSAISLRSGKIL+TP + E K+ S P+ L  +N
Subjt:  QIIKQQMSQLTNAINKLEGKGKLPAQPDHANVSAISLRSGKILETPPSDE-KVPSIPILLVDEN
TYK26581.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.7e-1370.31Show/hide
Query:  QIIKQQMSQLTNAINKLEGKGKLPAQPDHANVSAISLRSGKILETPPSDE-KVPSIPILLVDEN
        Q +KQQM+QLT AI+K++GKGKLPAQPDHANVSAISLRSGKIL+TP + E KV S P+ L  +N
Subjt:  QIIKQQMSQLTNAINKLEGKGKLPAQPDHANVSAISLRSGKILETPPSDE-KVPSIPILLVDEN
TrEMBL top hitse value%identityAlignment
A0A5A7TXC8 Retrotransposon gag protein1.2e-1268.75Show/hide
Query:  QIIKQQMSQLTNAINKLEGKGKLPAQPDHANVSAISLRSGKILETPPSDE-KVPSIPILLVDEN
        Q +KQQM+QLT AI+K++GKGKLPAQP+HANVSAISLRSGKIL+TP + E KV S P+ L  +N
Subjt:  QIIKQQMSQLTNAINKLEGKGKLPAQPDHANVSAISLRSGKILETPPSDE-KVPSIPILLVDEN
A0A5A7V0M2 Retrotransposon gag protein9.4e-1368.75Show/hide
Query:  QIIKQQMSQLTNAINKLEGKGKLPAQPDHANVSAISLRSGKILETPPSDE-KVPSIPILLVDEN
        Q +KQQM+QLT AI+K++GKGKLPAQPDHANVS ISLRSGKIL+TP + E KV S P+ L  +N
Subjt:  QIIKQQMSQLTNAINKLEGKGKLPAQPDHANVSAISLRSGKILETPPSDE-KVPSIPILLVDEN
A0A5A7V594 Retrotransposon gag protein3.2e-1370.31Show/hide
Query:  QIIKQQMSQLTNAINKLEGKGKLPAQPDHANVSAISLRSGKILETPPSDE-KVPSIPILLVDEN
        Q +KQQM+QLT AI+K++GKGKLPAQPDHANVSAISLRSGKIL+TP + E KV S P+ L  +N
Subjt:  QIIKQQMSQLTNAINKLEGKGKLPAQPDHANVSAISLRSGKILETPPSDE-KVPSIPILLVDEN
A0A5D3CB46 Retrotransposon gag protein7.2e-1368.75Show/hide
Query:  QIIKQQMSQLTNAINKLEGKGKLPAQPDHANVSAISLRSGKILETPPSDE-KVPSIPILLVDEN
        Q +KQQM+QLT AI+K++GKGKLPAQPDHANVSAISLRSGKIL+TP + E K+ S P+ L  +N
Subjt:  QIIKQQMSQLTNAINKLEGKGKLPAQPDHANVSAISLRSGKILETPPSDE-KVPSIPILLVDEN
A0A5D3DS57 Retrotransposon gag protein3.2e-1370.31Show/hide
Query:  QIIKQQMSQLTNAINKLEGKGKLPAQPDHANVSAISLRSGKILETPPSDE-KVPSIPILLVDEN
        Q +KQQM+QLT AI+K++GKGKLPAQPDHANVSAISLRSGKIL+TP + E KV S P+ L  +N
Subjt:  QIIKQQMSQLTNAINKLEGKGKLPAQPDHANVSAISLRSGKILETPPSDE-KVPSIPILLVDEN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCA
AATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAGCAACTTC
ATCCTCAAATAATCAAGCAACAAATGTCCCAATTGACCAATGCAATAAACAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATC
TCGCTTAGAAGCGGTAAAATTCTGGAAACTCCTCCAAGCGATGAAAAGGTACCATCTATCCCTATCCTTCTAGTAGATGAAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCA
AATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAGCAACTTC
ATCCTCAAATAATCAAGCAACAAATGTCCCAATTGACCAATGCAATAAACAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATC
TCGCTTAGAAGCGGTAAAATTCTGGAAACTCCTCCAAGCGATGAAAAGGTACCATCTATCCCTATCCTTCTAGTAGATGAAAATTAG
Protein sequenceShow/hide protein sequence
MAPLPGSDGGNVKVANVEFVVSLDILMTSVPTLWKRQMSLGSTILMETLTMPVGETTLTLDGEMTPNDPHKQLHPQIIKQQMSQLTNAINKLEGKGKLPAQPDHANVSAI
SLRSGKILETPPSDEKVPSIPILLVDEN