CuGenDBv2

Gene ID	PI0028223
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	mediator of RNA polymerase II transcription subunit 27
Genome location	chr04:5589668..5593068
RNA-Seq Expression	PI0028223
Synteny	PI0028223
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0016592 - mediator complex (cellular component) GO:0003713 - transcription coactivator activity (molecular function)
InterPro domains	IPR021627 - Mediator complex, subunit Med27

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004136512.1 mediator of RNA polymerase II transcription subunit 27 isoform X1 [Cucumis sativus]

2.2e-218

96.98

Show/hide

Query:  MRHIQQPSQGQTATVSPNTHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE
        MRHIQQPSQGQTATVSP+THSP S DDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE
Subjt:  MRHIQQPSQGQTATVSPNTHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE

Query:  SGVLSESLLSRSNYWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELIDSR
        SGVLSESLLSRSN WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEN SNNEPALKKPCFSHGVTDVKQNELIDSR
Subjt:  SGVLSESLLSRSNYWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELIDSR

Query:  SLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
        SLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
Subjt:  SLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS

Query:  PDERGSHVHARGFSNYHLFRHVTEHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLCP
        PDERGSHVHARGFSNYHLFRHVTEHAATVLQ+FLGNQPKAALYPLLLWICSYQNLFSKACSKCGR LSVNKQSDLLLPPAVRPYKQFCASK   + P
Subjt:  PDERGSHVHARGFSNYHLFRHVTEHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLCP

XP_008442914.1 PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Cucumis melo]

3.8e-218

96.47

Show/hide

Query:  MRHIQQPSQGQTATVSPNTHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE
        MRHIQQPSQGQTATVSPNTHSP+SADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE
Subjt:  MRHIQQPSQGQTATVSPNTHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE

Query:  SGVLSESLLSRSNYWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELIDSR
        SGVLSESLLSRSN WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEN SNNEPALKKPCFSHGVTDVKQNELIDSR
Subjt:  SGVLSESLLSRSNYWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELIDSR

Query:  SLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
        SLSDILSC+EKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHP+GSVEPDALAFFS
Subjt:  SLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS

Query:  PDERGSHVHARGFSNYHLFRHVTEHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLCP
        PDERGSHVHARGFSNYH+FRHVTEHAATVLQ+FLGNQPKAALYPLLLWICSYQNLFSKACSKCGR LSVNKQSDLLLPP VRPYKQFCASK     P
Subjt:  PDERGSHVHARGFSNYHLFRHVTEHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLCP

XP_022940393.1 mediator of RNA polymerase II transcription subunit 27 [Cucurbita moschata]

8.7e-199

88.75

Show/hide

Query:  MRHIQQPSQGQTATVSPNT---HSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR  Q P+QG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRHIQQPSQGQTATVSPNT---HSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNYWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELI
        LEESGVLSESLLSRSN WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL++ENGSN EPA KKPCFSHGVTDVKQ EL 
Subjt:  LEESGVLSESLLSRSNYWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELI

Query:  DSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA
        DS SLSDIL+CMEKEVP+LKIFTYERLDWLKQASALPSQANENSIGALKEH+YHSPRMSP +L AT  DKA VIELIIPSVFRAVVSLHPVGSVEPDA+A
Subjt:  DSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA

Query:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLCP
        FFSPDERGSHVHARGFSN+HLFRHVTEHAATVLQ+F+G Q KAAL+PLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPA+RPYKQFC SK   + P
Subjt:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLCP

XP_031739120.1 mediator of RNA polymerase II transcription subunit 27 isoform X2 [Cucumis sativus]

1.4e-201

92.13

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Query:  MRHIQQPSQGQTATVSPNTHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE
        MRHIQQPSQGQTATVSP+THSP S DDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE
Subjt:  MRHIQQPSQGQTATVSPNTHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE

Query:  SGVLSESLLSRSNYWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELIDSR
        SGVLSESLLSRSN WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEN SNNEPALKKPCFSHGVTDVKQNELIDSR
Subjt:  SGVLSESLLSRSNYWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELIDSR

Query:  SLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
        SLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
Subjt:  SLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS

Query:  PDERGSHVHARGFSNYHLFRHVTEHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGR-LLSVNKQSDLLLPPAVRPYKQFCASKTH
        PDERGSHVHARGFSNYHLFRHVTEHAATVLQ+FLGNQPKAALYPLLLWICSYQNLFSKACS   + +L + K          RP   FC+S  H
Subjt:  PDERGSHVHARGFSNYHLFRHVTEHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGR-LLSVNKQSDLLLPPAVRPYKQFCASKTH

XP_038904949.1 mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida]

5.3e-212

93.75

Show/hide

Query:  MRHIQQPSQGQTATVSPNT---HSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR  QQP+QGQTATVSPNT   HSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRHIQQPSQGQTATVSPNT---HSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNYWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELI
        LEESGVLSESLLSRSN WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNEL 
Subjt:  LEESGVLSESLLSRSNYWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELI

Query:  DSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA
        DSRSLS+IL+CMEKEVPELKIFTYERLDWLKQASALPSQANENSIG LKEHSYHSPRMSPG+LGATP DKAGVIEL+IPSVFRAVVSLHPVGSVEPDA+A
Subjt:  DSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA

Query:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLCP
        FFSPDERGSHVHARGFSN+HLFRHVTEHAATVLQ+FLGNQ KAALYPLLLWICSYQNLFSKACSKCG+LLSVNKQSDLLLPPAVRPYKQFCASK     P
Subjt:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLCP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LGT1 Uncharacterized protein

1.1e-218

96.98

Show/hide

Query:  MRHIQQPSQGQTATVSPNTHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE
        MRHIQQPSQGQTATVSP+THSP S DDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE
Subjt:  MRHIQQPSQGQTATVSPNTHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE

Query:  SGVLSESLLSRSNYWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELIDSR
        SGVLSESLLSRSN WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEN SNNEPALKKPCFSHGVTDVKQNELIDSR
Subjt:  SGVLSESLLSRSNYWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELIDSR

Query:  SLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
        SLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
Subjt:  SLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS

Query:  PDERGSHVHARGFSNYHLFRHVTEHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLCP
        PDERGSHVHARGFSNYHLFRHVTEHAATVLQ+FLGNQPKAALYPLLLWICSYQNLFSKACSKCGR LSVNKQSDLLLPPAVRPYKQFCASK   + P
Subjt:  PDERGSHVHARGFSNYHLFRHVTEHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLCP

A0A1S3B7L6 mediator of RNA polymerase II transcription subunit 27

1.8e-218

96.47

Show/hide

Query:  MRHIQQPSQGQTATVSPNTHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE
        MRHIQQPSQGQTATVSPNTHSP+SADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE
Subjt:  MRHIQQPSQGQTATVSPNTHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEE

Query:  SGVLSESLLSRSNYWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELIDSR
        SGVLSESLLSRSN WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEN SNNEPALKKPCFSHGVTDVKQNELIDSR
Subjt:  SGVLSESLLSRSNYWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELIDSR

Query:  SLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
        SLSDILSC+EKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHP+GSVEPDALAFFS
Subjt:  SLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS

Query:  PDERGSHVHARGFSNYHLFRHVTEHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLCP
        PDERGSHVHARGFSNYH+FRHVTEHAATVLQ+FLGNQPKAALYPLLLWICSYQNLFSKACSKCGR LSVNKQSDLLLPP VRPYKQFCASK     P
Subjt:  PDERGSHVHARGFSNYHLFRHVTEHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLCP

A0A6J1DC62 mediator of RNA polymerase II transcription subunit 27

1.0e-192

85.75

Show/hide

Query:  MRHIQQPSQGQTATVSPNT---HSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR  QQP+QGQTATVSPNT   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTA PHQS+KPLHLFQKED SMRQHL DLRAVGKQ
Subjt:  MRHIQQPSQGQTATVSPNT---HSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNYWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELI
        LEESGVLSESLLSRSN WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DE+  N EPALKKPCFSHGVT++KQ+EL 
Subjt:  LEESGVLSESLLSRSNYWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELI

Query:  DSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA
        + R+LSDIL+CMEKEVP+LKIFTYERLDWLKQA AL SQAN+NSIGALKEH+YHSPRM PG+L A+  DK  VIELIIPSVFRAVVSLHPVGSVEPDA+A
Subjt:  DSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA

Query:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLCP
        FF+PDERGS+VHARGFS +HLFRHVTEHAATVLQ+FLG Q KAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPA+RPYKQFC S+     P
Subjt:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLCP

A0A6J1FP59 mediator of RNA polymerase II transcription subunit 27

4.2e-199

88.75

Show/hide

Query:  MRHIQQPSQGQTATVSPNT---HSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR  Q P+QG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRHIQQPSQGQTATVSPNT---HSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNYWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELI
        LEESGVLSESLLSRSN WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL++ENGSN EPA KKPCFSHGVTDVKQ EL 
Subjt:  LEESGVLSESLLSRSNYWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELI

Query:  DSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA
        DS SLSDIL+CMEKEVP+LKIFTYERLDWLKQASALPSQANENSIGALKEH+YHSPRMSP +L AT  DKA VIELIIPSVFRAVVSLHPVGSVEPDA+A
Subjt:  DSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA

Query:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLCP
        FFSPDERGSHVHARGFSN+HLFRHVTEHAATVLQ+F+G Q KAAL+PLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPA+RPYKQFC SK   + P
Subjt:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLCP

A0A6J1KZZ9 mediator of RNA polymerase II transcription subunit 27

6.1e-198

88.25

Show/hide

Query:  MRHIQQPSQGQTATVSPNT---HSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ
        MR  Q P+QG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQ
Subjt:  MRHIQQPSQGQTATVSPNT---HSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQ

Query:  LEESGVLSESLLSRSNYWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELI
        LEESGVLSESLLSRSN WGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL++ENGSN EPA KKPCFSHGVTDVKQ EL 
Subjt:  LEESGVLSESLLSRSNYWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELI

Query:  DSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA
        DS SLSDIL+CMEKEVP+LKIFTYERLDWLKQAS LPSQANENSIG LKEH+YHSPRMSP +L AT  DKA VIELIIPSVFRAVVSLHPVGSVEPDA+A
Subjt:  DSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA

Query:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLCP
        FFSPDERGSHVHARGFSN+HLFRHVTEHAATVLQ+F+G Q KAAL+PLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPA+RPYKQFC SK     P
Subjt:  FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLCP

SwissProt top hits

e value

%identity

Alignment

Q8RWM3 Mediator of RNA polymerase II transcription subunit 27

9.6e-124

61.39

Show/hide

Query:  SADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNYWGLHMPLVC
        S  DAPPKQVA AM+RL  AAR+IADIRLGADR+LEA+ V +QP  +  PL LF +EDASMRQHL DLR +GK+LEESGVL+ESL SRSN WGLHMPLVC
Subjt:  SADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNYWGLHMPLVC

Query:  PDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYER
        PDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPH++D  G   EP+ KK   SH + +  + E +D ++L DI S +EK VP +K+ TY R
Subjt:  PDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYER

Query:  LDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFSPDERGSHVHARGFSNYHLFRHVT
        L+WLK+A++LP   +++   A K     S ++  G L     DK  VIEL  PS+FRA+VSL P GSV+PDA+AFFSPDE GS++HARGFS YH+++H+T
Subjt:  LDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFSPDERGSHVHARGFSNYHLFRHVT

Query:  EHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLC
        EHAAT LQ+FLG     ALY LLLWICS++++FSK C+KCGRLL+++K+S L+LPP  R Y++   +    +C
Subjt:  EHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLC

Arabidopsis top hits

e value

%identity

Alignment

AT3G09180.1 CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

6.8e-125

61.39

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Query:  SADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNYWGLHMPLVC
        S  DAPPKQVA AM+RL  AAR+IADIRLGADR+LEA+ V +QP  +  PL LF +EDASMRQHL DLR +GK+LEESGVL+ESL SRSN WGLHMPLVC
Subjt:  SADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNYWGLHMPLVC

Query:  PDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYER
        PDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPH++D  G   EP+ KK   SH + +  + E +D ++L DI S +EK VP +K+ TY R
Subjt:  PDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYER

Query:  LDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFSPDERGSHVHARGFSNYHLFRHVT
        L+WLK+A++LP   +++   A K     S ++  G L     DK  VIEL  PS+FRA+VSL P GSV+PDA+AFFSPDE GS++HARGFS YH+++H+T
Subjt:  LDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFSPDERGSHVHARGFSNYHLFRHVT

Query:  EHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLC
        EHAAT LQ+FLG     ALY LLLWICS++++FSK C+KCGRLL+++K+S L+LPP  R Y++   +    +C
Subjt:  EHAATVLQHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLC

Sequences

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CDS sequence

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ATGCGACACATTCAGCAGCCATCGCAGGGCCAAACTGCGACGGTCAGCCCTAACACTCACTCTCCCGCCTCTGCCGACGACGCTCCTCCCAAGCAGGTCGCTCTCGCCAT
GGACAGACTCGGTCACGCCGCTCGTCTCATCGCCGACATCAGACTCGGCGCTGATCGCCTTCTCGAAGCCCTATGCGTCACTGCTCAGCCTCATCAAAGCTCTAAGCCCC
TCCATTTGTTTCAGAAAGAAGACGCTTCCATGCGCCAACACCTCCTCGACCTTCGTGCAGTTGGAAAGCAGCTTGAAGAATCTGGTGTTCTCAGTGAATCTCTTCTTTCG
AGAAGTAATTATTGGGGTCTACATATGCCTTTAGTGTGTCCTGATGGCGCTGTGGTTGCTTATGCTTGGAAACGTCAACTAGCTGGCCAGGCTGGTGCATCTGCAGTTGA
CCGAACCAGGTTAGCTTTAAAGGCCTTCACTGACCAAAAAAGACGGTTTTTCCCTCATCTTGAAGATGAAAATGGGTCAAATAATGAGCCTGCTCTGAAGAAGCCTTGTT
TTTCTCATGGAGTGACAGATGTCAAACAAAATGAGCTTATTGATTCTAGATCACTCTCGGATATTTTATCCTGTATGGAAAAGGAAGTGCCAGAGCTTAAGATTTTCACT
TATGAGCGATTGGACTGGTTAAAACAAGCTTCAGCCCTTCCCTCTCAAGCAAATGAGAATTCAATAGGAGCATTGAAAGAGCATAGCTATCATAGTCCTAGGATGAGCCC
TGGAGCACTTGGGGCTACTCCTGCAGATAAAGCTGGTGTGATTGAGTTGATCATTCCTTCGGTCTTTAGAGCCGTAGTATCACTGCATCCAGTTGGTTCTGTTGAACCAG
ATGCTCTCGCTTTCTTTTCTCCCGATGAGAGAGGCAGCCATGTACATGCCAGGGGTTTTTCAAATTATCATTTATTCAGACATGTTACGGAGCATGCTGCCACGGTGCTG
CAGCATTTTCTTGGAAATCAACCAAAAGCAGCTCTTTATCCTCTATTGCTTTGGATCTGCAGCTACCAAAATTTATTTTCAAAAGCTTGTAGTAAATGTGGACGGCTGCT
ATCAGTAAACAAACAATCCGATTTATTGTTACCTCCTGCAGTTCGGCCATACAAACAGTTTTGTGCATCAAAAACTCATCAGCTGTGCCCATAA

mRNA sequence

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Protein sequence

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MRHIQQPSQGQTATVSPNTHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLS
RSNYWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFT
YERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFSPDERGSHVHARGFSNYHLFRHVTEHAATVL
QHFLGNQPKAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCASKTHQLCP

PI0028223 (gene) of Melon (PI 482460) v1 genome