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PI0028248 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028248
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionLINE-1 reverse transcriptase like
Genome locationchr05:11245207..11245553
RNA-Seq ExpressionPI0028248
SyntenyPI0028248
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056660.1 GTP-binding protein [Cucumis melo var. makuwa]9.3e-2359.79Show/hide
Query:  REGGTISRSLL----------DPFENIRVSHKAHTFSDHFPLLLEVGVVLWGPSPFQFCNSRLLNKDYNIVVDEALNNSNFNGWASFILHKQLRKVK
        REGGT +RSLL          D F+N RVS KA  FSDHFPLLLE G +LWGPS F+FCNS LL K+ N  ++EAL +S   GWA FILH+QL KVK
Subjt:  REGGTISRSLL----------DPFENIRVSHKAHTFSDHFPLLLEVGVVLWGPSPFQFCNSRLLNKDYNIVVDEALNNSNFNGWASFILHKQLRKVK

KAA0057564.1 Transposon TX1 uncharacterized [Cucumis melo var. makuwa]7.6e-1742.73Show/hide
Query:  MEIPLHNRIYTCPREGGTISRSLLD----------PFENIRVSHKAHTFSDHFPLLLEVGVVLWGPSPFQFCNSRLLNKDYNIVVDEALNNSNFNGWASF
        +EIPL N  +T  REG ++SRSLLD           F + R S K    SDH P+LLE G   WGPSPF+FCNS LL+K    ++  +L + N   W  F
Subjt:  MEIPLHNRIYTCPREGGTISRSLLD----------PFENIRVSHKAHTFSDHFPLLLEVGVVLWGPSPFQFCNSRLLNKDYNIVVDEALNNSNFNGWASF

Query:  ILHKQLRKVK
        +++ +LR +K
Subjt:  ILHKQLRKVK

TYJ98683.1 hypothetical protein E5676_scaffold429G00120 [Cucumis melo var. makuwa]3.6e-1951.49Show/hide
Query:  EIPLHNRIYTCPREGGTISRSLLDPF----------ENIRVSHKAHTFSDHFPLLLEVGVVLWGPSPFQFCNSRLLNKDYNIVVDEALNNSNFNGWASFI
        E+PL N   T  REG +ISRSLLDPF          EN RV  KAHT SDHFPLLLE G + WGPSPF+F NS L   + N ++ E  N ++   WA F+
Subjt:  EIPLHNRIYTCPREGGTISRSLLDPF----------ENIRVSHKAHTFSDHFPLLLEVGVVLWGPSPFQFCNSRLLNKDYNIVVDEALNNSNFNGWASFI

Query:  L
        L
Subjt:  L

TYK03825.1 exodeoxyribonuclease-like [Cucumis melo var. makuwa]1.4e-1852.13Show/hide
Query:  MEIPLHNRIYTCPREGGTISRSLL----------DPFENIRVSHKAHTFSDHFPLLLEVGVVLWGPSPFQFCNSRLLNKDYNIVVDEALNNSNF
        MEIP+ N  YT PREGGT S+SL           D F+N RVSHKA  FS+H PL L+ G ++WGPSPF+FCNS L+N D N V+ + L + N+
Subjt:  MEIPLHNRIYTCPREGGTISRSLL----------DPFENIRVSHKAHTFSDHFPLLLEVGVVLWGPSPFQFCNSRLLNKDYNIVVDEALNNSNF

XP_038904301.1 uncharacterized protein LOC120090656 [Benincasa hispida]7.1e-1543.64Show/hide
Query:  MEIPLHNRIYTCPREGGTISRSLL----------DPFENIRVSHKAHTFSDHFPLLLEVGVVLWGPSPFQFCNSRLLNKDYNIVVDEALNNSNFNGWASF
        +E PL N  +T  REG   S+SLL          D F+N RV+ +A T SDHFPL LE G   WGPS F+FCNS L NK+   +++++L     + WA+ 
Subjt:  MEIPLHNRIYTCPREGGTISRSLL----------DPFENIRVSHKAHTFSDHFPLLLEVGVVLWGPSPFQFCNSRLLNKDYNIVVDEALNNSNFNGWASF

Query:  ILHKQLRKVK
         L   LRK K
Subjt:  ILHKQLRKVK

TrEMBL top hitse value%identityAlignment
A0A5A7UNL3 GTP-binding protein4.5e-2359.79Show/hide
Query:  REGGTISRSLL----------DPFENIRVSHKAHTFSDHFPLLLEVGVVLWGPSPFQFCNSRLLNKDYNIVVDEALNNSNFNGWASFILHKQLRKVK
        REGGT +RSLL          D F+N RVS KA  FSDHFPLLLE G +LWGPS F+FCNS LL K+ N  ++EAL +S   GWA FILH+QL KVK
Subjt:  REGGTISRSLL----------DPFENIRVSHKAHTFSDHFPLLLEVGVVLWGPSPFQFCNSRLLNKDYNIVVDEALNNSNFNGWASFILHKQLRKVK

A0A5A7UR38 Transposon TX1 uncharacterized3.7e-1742.73Show/hide
Query:  MEIPLHNRIYTCPREGGTISRSLLD----------PFENIRVSHKAHTFSDHFPLLLEVGVVLWGPSPFQFCNSRLLNKDYNIVVDEALNNSNFNGWASF
        +EIPL N  +T  REG ++SRSLLD           F + R S K    SDH P+LLE G   WGPSPF+FCNS LL+K    ++  +L + N   W  F
Subjt:  MEIPLHNRIYTCPREGGTISRSLLD----------PFENIRVSHKAHTFSDHFPLLLEVGVVLWGPSPFQFCNSRLLNKDYNIVVDEALNNSNFNGWASF

Query:  ILHKQLRKVK
        +++ +LR +K
Subjt:  ILHKQLRKVK

A0A5D3BHE3 Uncharacterized protein1.8e-1951.49Show/hide
Query:  EIPLHNRIYTCPREGGTISRSLLDPF----------ENIRVSHKAHTFSDHFPLLLEVGVVLWGPSPFQFCNSRLLNKDYNIVVDEALNNSNFNGWASFI
        E+PL N   T  REG +ISRSLLDPF          EN RV  KAHT SDHFPLLLE G + WGPSPF+F NS L   + N ++ E  N ++   WA F+
Subjt:  EIPLHNRIYTCPREGGTISRSLLDPF----------ENIRVSHKAHTFSDHFPLLLEVGVVLWGPSPFQFCNSRLLNKDYNIVVDEALNNSNFNGWASFI

Query:  L
        L
Subjt:  L

A0A5D3BXH7 Exodeoxyribonuclease-like6.7e-1952.13Show/hide
Query:  MEIPLHNRIYTCPREGGTISRSLL----------DPFENIRVSHKAHTFSDHFPLLLEVGVVLWGPSPFQFCNSRLLNKDYNIVVDEALNNSNF
        MEIP+ N  YT PREGGT S+SL           D F+N RVSHKA  FS+H PL L+ G ++WGPSPF+FCNS L+N D N V+ + L + N+
Subjt:  MEIPLHNRIYTCPREGGTISRSLL----------DPFENIRVSHKAHTFSDHFPLLLEVGVVLWGPSPFQFCNSRLLNKDYNIVVDEALNNSNF

A0A5D3CIL8 Uncharacterized protein5.1e-1140.62Show/hide
Query:  MEIPLHNRIYTCPREGGTISRSLL----------DPFENIRVSHKAHTFSDHFPLLLEVGVVLWGPSPFQFCNSRLLNKDYNIVVDEALNNSNFNG
        +E+PL N  +T    G   +RSL+          D FEN RV+ ++  FSDHFPL+LE G + WGPSPF+F NS  L+K    V+  +   S   G
Subjt:  MEIPLHNRIYTCPREGGTISRSLL----------DPFENIRVSHKAHTFSDHFPLLLEVGVVLWGPSPFQFCNSRLLNKDYNIVVDEALNNSNFNG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATTCCCCTTCATAATCGAATATACACATGTCCTAGAGAGGGTGGCACGATCTCTAGATCGTTATTGGATCCGTTTGAAAATATTAGAGTCTCTCACAAAGCACA
CACCTTTTCTGATCACTTTCCCTTATTGTTAGAGGTTGGAGTAGTTTTATGGGGTCCCTCACCTTTCCAATTTTGCAATAGCCGACTACTGAATAAAGACTATAACATTG
TCGTTGATGAAGCTTTAAATAACTCTAACTTTAATGGTTGGGCCAGTTTTATTCTACACAAACAATTGAGAAAAGTTAAATTAGTAGGTAAAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATTCCCCTTCATAATCGAATATACACATGTCCTAGAGAGGGTGGCACGATCTCTAGATCGTTATTGGATCCGTTTGAAAATATTAGAGTCTCTCACAAAGCACA
CACCTTTTCTGATCACTTTCCCTTATTGTTAGAGGTTGGAGTAGTTTTATGGGGTCCCTCACCTTTCCAATTTTGCAATAGCCGACTACTGAATAAAGACTATAACATTG
TCGTTGATGAAGCTTTAAATAACTCTAACTTTAATGGTTGGGCCAGTTTTATTCTACACAAACAATTGAGAAAAGTTAAATTAGTAGGTAAAGCTTAA
Protein sequenceShow/hide protein sequence
MEIPLHNRIYTCPREGGTISRSLLDPFENIRVSHKAHTFSDHFPLLLEVGVVLWGPSPFQFCNSRLLNKDYNIVVDEALNNSNFNGWASFILHKQLRKVKLVGKA