; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0028279 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028279
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionHigh mobility group B protein 6
Genome locationchr08:14274924..14276206
RNA-Seq ExpressionPI0028279
SyntenyPI0028279
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025412.1 high mobility group B protein 6 [Cucumis melo var. makuwa]2.2e-9498.95Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLP PRD+PLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF

XP_004142680.1 high mobility group B protein 6 [Cucumis sativus]5.7e-9599.48Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF

XP_008463266.1 PREDICTED: high mobility group B protein 6 [Cucumis melo]3.1e-9398.43Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLP PRD+PLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF

XP_022978293.1 high mobility group B protein 13-like [Cucurbita maxima]1.8e-8086.01Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP--ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEK
        MQ LH PL  P DLPLKSGRRPLQPKNSLPNPVP+VAK+IKSKPE IQISL  DANKENHPP  A   S+ESCDLSLADELNAVKRK+ERLRL+ ERTE+
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP--ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEK

Query:  MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
        ML+ERD++LELRMKELLQRS+EQRDLEMEVDRLFRLKELR YCMRISPIRSLREKEREKIF DAQFPE+EIGDGEESVGENSSLDSSEFVTGF
Subjt:  MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF

XP_038883293.1 uncharacterized protein LOC120074285 [Benincasa hispida]1.2e-8489.85Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP------ATTVSIESCDLSLADELNAVKRKMERLRLDGE
        MQTLHHPL  P+DLPLKSGRRPLQPKNSLPN  PSVAK IKSKPE IQISLSGDANKENHPP       TT SIESCD SLADELNAVKRK+ERLRLDGE
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP------ATTVSIESCDLSLADELNAVKRKMERLRLDGE

Query:  RTEKMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
        RTE+MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDS+ FVTGF
Subjt:  RTEKMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF

TrEMBL top hitse value%identityAlignment
A0A0A0L063 Uncharacterized protein2.7e-9599.48Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF

A0A1S3CJ78 high mobility group B protein 61.5e-9398.43Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLP PRD+PLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF

A0A5A7SJQ2 High mobility group B protein 61.0e-9498.95Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLP PRD+PLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF

A0A5D3CEI7 High mobility group B protein 61.5e-9398.43Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLP PRD+PLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF

A0A6J1ISM0 high mobility group B protein 13-like8.6e-8186.01Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP--ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEK
        MQ LH PL  P DLPLKSGRRPLQPKNSLPNPVP+VAK+IKSKPE IQISL  DANKENHPP  A   S+ESCDLSLADELNAVKRK+ERLRL+ ERTE+
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP--ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEK

Query:  MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF
        ML+ERD++LELRMKELLQRS+EQRDLEMEVDRLFRLKELR YCMRISPIRSLREKEREKIF DAQFPE+EIGDGEESVGENSSLDSSEFVTGF
Subjt:  MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G01910.1 unknown protein2.3e-2245.91Show/hide
Query:  SGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQR
        SGR+ LQP+N    P    A  +K K        + +  KEN    T++     D SLA+EL+A K+K+ERLR D E TEK+L+ERD  ++L M  LLQR
Subjt:  SGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQR

Query:  SQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESV
         + Q+ LE++VDRLFRLKEL +Y  +ISPIRSLR KE+++      F   E  D E SV
Subjt:  SQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESV

AT5G01910.2 unknown protein8.9e-2247.86Show/hide
Query:  SGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQR
        SGR+ LQP+N    P    A  +K K        + +  KEN    T++     D SLA+EL+A K+K+ERLR D E TEK+L+ERD  ++L M  LLQR
Subjt:  SGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQR

Query:  SQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREK
         + Q+ LE++VDRLFRLKEL +Y  +ISPIRSLR KE+++
Subjt:  SQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAACTCTCCACCATCCCTTACCCCCTCCTCGAGATCTTCCTCTCAAGTCTGGCCGCCGCCCGCTCCAGCCAAAGAATTCTCTCCCAAATCCTGTCCCTTCCGTTGC
CAAAATCATCAAATCCAAGCCGGAAATCATCCAGATCTCCCTCTCCGGCGACGCCAATAAGGAGAATCATCCGCCGGCGACAACGGTGAGTATTGAATCATGTGATTTGT
CTCTGGCGGATGAACTAAATGCGGTTAAGAGGAAGATGGAGAGATTGAGATTGGACGGTGAACGAACGGAGAAGATGTTGAGAGAGAGGGATTTGGTTTTAGAGTTACGG
ATGAAGGAACTGTTACAGAGAAGTCAGGAACAGAGAGATCTGGAAATGGAAGTTGATAGGTTATTTAGATTGAAGGAACTTAGATCGTACTGTATGAGGATTTCTCCGAT
TCGAAGTCTCAGAGAGAAAGAACGAGAAAAGATTTTCACCGATGCACAATTTCCGGAATTTGAAATTGGCGATGGAGAAGAATCTGTTGGCGAAAACTCCTCGTTGGATT
CTTCAGAATTCGTAACAGGTTTTTGA
mRNA sequenceShow/hide mRNA sequence
GAGAAACCCTTTTTTTTCATTCTTCTCTTTTTCTATGATTCCATTTCTTCACTTTCAAACCAATTTCTCCATCTCCACTCCACACCAATATGCAAACTCTCCACCATCCC
TTACCCCCTCCTCGAGATCTTCCTCTCAAGTCTGGCCGCCGCCCGCTCCAGCCAAAGAATTCTCTCCCAAATCCTGTCCCTTCCGTTGCCAAAATCATCAAATCCAAGCC
GGAAATCATCCAGATCTCCCTCTCCGGCGACGCCAATAAGGAGAATCATCCGCCGGCGACAACGGTGAGTATTGAATCATGTGATTTGTCTCTGGCGGATGAACTAAATG
CGGTTAAGAGGAAGATGGAGAGATTGAGATTGGACGGTGAACGAACGGAGAAGATGTTGAGAGAGAGGGATTTGGTTTTAGAGTTACGGATGAAGGAACTGTTACAGAGA
AGTCAGGAACAGAGAGATCTGGAAATGGAAGTTGATAGGTTATTTAGATTGAAGGAACTTAGATCGTACTGTATGAGGATTTCTCCGATTCGAAGTCTCAGAGAGAAAGA
ACGAGAAAAGATTTTCACCGATGCACAATTTCCGGAATTTGAAATTGGCGATGGAGAAGAATCTGTTGGCGAAAACTCCTCGTTGGATTCTTCAGAATTCGTAACAGGTT
TTTGAAATCGTTTCTAAAATTTTGTGGATTTGCCCTAATTTTCCGATCGCCTTACTACATCTTCTTCGGATTTTCAAAAGTAGAAATTAGAAAAGGAAATGGATGTAATA
CCTCATTATGATCTTCTTTATGCATTAATTGAAGCTTTTGAGTTGTTGTAATCAATGTGATCCTTGTCTCCATCTTCGTCTTCTTCCTCACTTCAATTAATGTTTGAAAA
TGAAGAAATTCCAAATCGTGTTCGTGAATTTTTCTCTCGCCCCTCCATTATCATCATGATCTGTAATGAATTTGGTGAGTGAGTTTAGGAAGATCAATTGATTCAATTCA
TCATCATCAATTACACACAAACAATGGAAGAATATGAGTTTAAATAATTTTGGTGACTTTGAATTTTAATATTTGGAGTGTTCTTAATTGATCAATATTTAATGCGTTGT
GTTTGAATGGACT
Protein sequenceShow/hide protein sequence
MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELR
MKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF