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PI0028290 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028290
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr12:12482492..12483085
RNA-Seq ExpressionPI0028290
SyntenyPI0028290
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064182.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.8e-1947.46Show/hide
Query:  MDSSRSLSNNLDEFKKIISKFKDLMERLGDDNEALVLLNSLLEAYKKVKNALKYGRDTINRNAIISALRTKEIELLSTKKEQSSSEGLFMKGNFKPNQ-P
        MD S++L++N+DEFKK +S+FK L ++L D+NE  VLLNSL +AYK VK A KY +D++  +AI+SA+RT+E+E   ++KE  + +GLF+KG  + NQ  
Subjt:  MDSSRSLSNNLDEFKKIISKFKDLMERLGDDNEALVLLNSLLEAYKKVKNALKYGRDTINRNAIISALRTKEIELLSTKKEQSSSEGLFMKGNFKPNQ-P

Query:  TGGKQQHSDENKCKQKIK
               +DE K K K K
Subjt:  TGGKQQHSDENKCKQKIK

KAA0065687.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]8.9e-1955.43Show/hide
Query:  MDSSRSLSNNLDEFKKIISKFKDLMERLGDDNEALVLLNSLLEAYKKVKNALKYGRDTINRNAIISALRTKEIELLSTKKEQSSSEGLFMKG
        MD ++SL  NL EFKK+ S FK+L +++GD+NE+ +LLNSL EAYK+VK AL+YGR  I    +ISA+RT+E++L S +++QS+ EGLF KG
Subjt:  MDSSRSLSNNLDEFKKIISKFKDLMERLGDDNEALVLLNSLLEAYKKVKNALKYGRDTINRNAIISALRTKEIELLSTKKEQSSSEGLFMKG

KAE8649708.1 hypothetical protein Csa_011950 [Cucumis sativus]7.5e-1832.8Show/hide
Query:  MDSSRSLSNNLDEFKKIISKFKDLMERLGDDNEALVLLNSLLEAYKKVKNALKYGRDTINRNAIISALRTKEIELLSTKKEQSSSEGLFMKGNFKPNQPT
        M+ S+ L  NL+EFKKII    ++ E++ D+N+A++LLNSLLE Y++VK A+KYGRD++  + ++ AL+T+ +++   KKE+   E L  KG  +     
Subjt:  MDSSRSLSNNLDEFKKIISKFKDLMERLGDDNEALVLLNSLLEAYKKVKNALKYGRDTINRNAIISALRTKEIELLSTKKEQSSSEGLFMKGNFKPNQPT

Query:  GGKQQHSDENKCKQKIKCKYCKKKDHLIKDCFILKRKNQEKEKDSKGKKPEASIVVGTYVFSDALTSTQDKANQCNLLWKHDWVLDSRC
        G ++    ++K K + KC  C K+ H  K+C + K K     +   G+   A+++ G       + S +D  +         W++DS C
Subjt:  GGKQQHSDENKCKQKIKCKYCKKKDHLIKDCFILKRKNQEKEKDSKGKKPEASIVVGTYVFSDALTSTQDKANQCNLLWKHDWVLDSRC

XP_038880322.1 uncharacterized protein LOC120071961 [Benincasa hispida]4.3e-2138.65Show/hide
Query:  MDSSRSLSNNLDEFKKIISKFKDLMERLGDDNEALVLLNSLLEAYKKVKNALKYGRDTINRNAIISALRTKEIELLSTKKEQSSSEGLFMKGNFKPNQPT
        MDS + LSNNLDEFK+I+ +FK L E++GD+NEA VLLNSL E YK+VKNALKYGR+++  +AIISALRT+E+EL S KKEQ  +EG      +K     
Subjt:  MDSSRSLSNNLDEFKKIISKFKDLMERLGDDNEALVLLNSLLEAYKKVKNALKYGRDTINRNAIISALRTKEIELLSTKKEQSSSEGLFMKGNFKPNQPT

Query:  GGKQQHSDENKCKQKIKCKYCKKKDHLIKDCFILKRKNQEKEKDSK-----GKKPEASIVVGTYVFSDALTSTQDKANQCNLLWKH-DWVLDSRC----N
         G+  +   N+  +      C+ KD ++           E  KDSK      +  +  IV G  + + A T +     + +L  K    + +  C    N
Subjt:  GGKQQHSDENKCKQKIKCKYCKKKDHLIKDCFILKRKNQEKEKDSK-----GKKPEASIVVGTYVFSDALTSTQDKANQCNLLWKH-DWVLDSRC----N

Query:  NQSCFIG
         + C +G
Subjt:  NQSCFIG

XP_038885928.1 uncharacterized protein LOC120076236 [Benincasa hispida]6.0e-2343.2Show/hide
Query:  MDSSRSLSNNLDEFKKIISKFKDLMERLGDDNEALVLLNSLLEAYKKVKNALKYGRDTINRNAIISALRTKEIELLSTKKEQSSSEGLFMKGNFKPNQPT
        MD ++SL++NL+EFK + S F+ + + +G++NEA +LLNSL E +K VK ALKYGR+ I   AIISA+  KE+EL  TKK+Q   EG F KGN K    T
Subjt:  MDSSRSLSNNLDEFKKIISKFKDLMERLGDDNEALVLLNSLLEAYKKVKNALKYGRDTINRNAIISALRTKEIELLSTKKEQSSSEGLFMKGNFKPNQPT

Query:  GGKQQHSDENKCKQKIKCKYCKKKDHLIKDCFILKRKNQEKEKDSKGKKPEASIVVGTYVFSDALTSTQ
         G+   + E   +  +K           KDC+ LKRK  ++ K   GK+ EA++   + V+SDAL +T+
Subjt:  GGKQQHSDENKCKQKIKCKYCKKKDHLIKDCFILKRKNQEKEKDSKGKKPEASIVVGTYVFSDALTSTQ

TrEMBL top hitse value%identityAlignment
A0A5A7V734 Retrovirus-related Pol polyprotein from transposon TNT 1-943.3e-1947.46Show/hide
Query:  MDSSRSLSNNLDEFKKIISKFKDLMERLGDDNEALVLLNSLLEAYKKVKNALKYGRDTINRNAIISALRTKEIELLSTKKEQSSSEGLFMKGNFKPNQ-P
        MD S++L++N+DEFKK +S+FK L ++L D+NE  VLLNSL +AYK VK A KY +D++  +AI+SA+RT+E+E   ++KE  + +GLF+KG  + NQ  
Subjt:  MDSSRSLSNNLDEFKKIISKFKDLMERLGDDNEALVLLNSLLEAYKKVKNALKYGRDTINRNAIISALRTKEIELLSTKKEQSSSEGLFMKGNFKPNQ-P

Query:  TGGKQQHSDENKCKQKIK
               +DE K K K K
Subjt:  TGGKQQHSDENKCKQKIK

A0A5D3CAI4 Retrovirus-related Pol polyprotein from transposon TNT 1-944.3e-1955.43Show/hide
Query:  MDSSRSLSNNLDEFKKIISKFKDLMERLGDDNEALVLLNSLLEAYKKVKNALKYGRDTINRNAIISALRTKEIELLSTKKEQSSSEGLFMKG
        MD ++SL  NL EFKK+ S FK+L +++GD+NE+ +LLNSL EAYK+VK AL+YGR  I    +ISA+RT+E++L S +++QS+ EGLF KG
Subjt:  MDSSRSLSNNLDEFKKIISKFKDLMERLGDDNEALVLLNSLLEAYKKVKNALKYGRDTINRNAIISALRTKEIELLSTKKEQSSSEGLFMKG

A0A5D3DH66 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-1731.16Show/hide
Query:  MDSSRSLSNNLDEFKKIISKFKDLMERLGDDNEALVLLNSLLEAYKKVKNALKYGRDTINRNAIISALRTKEIELLSTKKEQSSSEGLFMKGNFKPNQPT
        MD S+SL  NL+EF+KI+    ++ E++ D+N+A++LLNSL E Y++VK A+KYGRD++  + ++ AL+T+ +++   KKE+   E L  +G     +  
Subjt:  MDSSRSLSNNLDEFKKIISKFKDLMERLGDDNEALVLLNSLLEAYKKVKNALKYGRDTINRNAIISALRTKEIELLSTKKEQSSSEGLFMKGNFKPNQPT

Query:  GGKQQHSDENKCKQKIKCKYCKKKDHLIKDCFILKRKNQEKEKDSKGKKPEASIVVGTYVFSDALTSTQDKANQCNLLWKHD-----WVLDSRCNNQSC
         GK++ S  N  ++  KC  C K+ H  K+C + K +     + +   +  ++ +   Y   D++ +  + A    L+  H      W++DS C+N +C
Subjt:  GGKQQHSDENKCKQKIKCKYCKKKDHLIKDCFILKRKNQEKEKDSKGKKPEASIVVGTYVFSDALTSTQDKANQCNLLWKHD-----WVLDSRCNNQSC

A0A5D3DVM0 Retrovirus-related Pol polyprotein from transposon TNT 1-943.7e-1831.16Show/hide
Query:  MDSSRSLSNNLDEFKKIISKFKDLMERLGDDNEALVLLNSLLEAYKKVKNALKYGRDTINRNAIISALRTKEIELLSTKKEQSSSEGLFMKGN--FKPNQ
        M+ +++L  NLDEFKK+ +      E+LG ++EA +L+N + + YK+VK +LKYGR+TI  N++I+AL++KE+EL +  K  +++E LF KGN  F+ N 
Subjt:  MDSSRSLSNNLDEFKKIISKFKDLMERLGDDNEALVLLNSLLEAYKKVKNALKYGRDTINRNAIISALRTKEIELLSTKKEQSSSEGLFMKGN--FKPNQ

Query:  PTGGKQQHSDENKCKQKIKCKYCKKKDHLIKDC---------------------FILKRKNQEKEKDSKGKK---PEASIVVGTYVFSDALTSTQDKANQ
            K Q S  +  K  +KC  C K+ H  ++C                        + +N ++E   +G++       +    + ++  L +T  +A +
Subjt:  PTGGKQQHSDENKCKQKIKCKYCKKKDHLIKDC---------------------FILKRKNQEKEKDSKGKK---PEASIVVGTYVFSDALTSTQDKANQ

Query:  CNLLWKHDWVLDSRC
           + + DWVLDS C
Subjt:  CNLLWKHDWVLDSRC

A0A6D2HSU5 Uncharacterized protein6.2e-1833.16Show/hide
Query:  DSSRSLSNNLDEFKKIISKFKDLMERLGDDNEALVLLNSLLEAYKKVKNALKYGRDTINRNAIISALRTKEIELL-STKKEQSSSEGLFMKGNFKPNQPT
        ++S+ +  N+D+F KI+++   L   + ++ +A+V LN+L  AY ++K+ LKYG+++I+   +ISA R+K+ E+  S K +  S+  L+     +  +  
Subjt:  DSSRSLSNNLDEFKKIISKFKDLMERLGDDNEALVLLNSLLEAYKKVKNALKYGRDTINRNAIISALRTKEIELL-STKKEQSSSEGLFMKGNFKPNQPT

Query:  GGKQQHSDENKCK--QKIKCKYCKKKDHLIKDCFILKRKNQEKEKDSKGKKPEASIVVGTYVFSDALTSTQDKANQCNLLWKHDWVLDSRCNN
         G  +   ++K K  +K+ C YCKK+ H+ KDCF  KR+    E DS G   EA++V+G     D LT T+D +       + +WV+DS C +
Subjt:  GGKQQHSDENKCK--QKIKCKYCKKKDHLIKDCFILKRKNQEKEKDSKGKKPEASIVVGTYVFSDALTSTQDKANQCNLLWKHDWVLDSRCNN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCATCAAGATCACTATCCAACAATCTTGATGAATTCAAGAAGATCATTTCTAAATTCAAAGACTTAATGGAAAGGCTAGGAGATGACAATGAAGCCCTTGTGCT
TCTTAATTCACTACTGGAAGCTTATAAGAAAGTAAAAAATGCACTAAAGTATGGAAGAGACACTATAAACAGAAATGCCATAATTTCTGCTTTAAGAACAAAAGAAATAG
AGTTGCTATCTACCAAGAAAGAACAGTCCAGTAGTGAAGGTTTATTTATGAAAGGAAATTTTAAACCTAATCAACCTACAGGTGGAAAACAACAACATTCTGATGAGAAC
AAGTGTAAACAGAAAATCAAATGCAAGTACTGCAAGAAAAAGGATCATCTTATTAAAGATTGTTTCATCCTAAAAAGGAAGAATCAAGAAAAGGAGAAGGATTCGAAGGG
AAAAAAACCTGAAGCATCTATTGTTGTAGGTACCTATGTTTTCTCGGATGCCCTTACCTCAACTCAAGATAAGGCCAATCAATGTAACCTCCTTTGGAAACATGATTGGG
TCTTGGATTCCAGATGCAACAATCAATCTTGTTTCATAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCATCAAGATCACTATCCAACAATCTTGATGAATTCAAGAAGATCATTTCTAAATTCAAAGACTTAATGGAAAGGCTAGGAGATGACAATGAAGCCCTTGTGCT
TCTTAATTCACTACTGGAAGCTTATAAGAAAGTAAAAAATGCACTAAAGTATGGAAGAGACACTATAAACAGAAATGCCATAATTTCTGCTTTAAGAACAAAAGAAATAG
AGTTGCTATCTACCAAGAAAGAACAGTCCAGTAGTGAAGGTTTATTTATGAAAGGAAATTTTAAACCTAATCAACCTACAGGTGGAAAACAACAACATTCTGATGAGAAC
AAGTGTAAACAGAAAATCAAATGCAAGTACTGCAAGAAAAAGGATCATCTTATTAAAGATTGTTTCATCCTAAAAAGGAAGAATCAAGAAAAGGAGAAGGATTCGAAGGG
AAAAAAACCTGAAGCATCTATTGTTGTAGGTACCTATGTTTTCTCGGATGCCCTTACCTCAACTCAAGATAAGGCCAATCAATGTAACCTCCTTTGGAAACATGATTGGG
TCTTGGATTCCAGATGCAACAATCAATCTTGTTTCATAGGATGA
Protein sequenceShow/hide protein sequence
MDSSRSLSNNLDEFKKIISKFKDLMERLGDDNEALVLLNSLLEAYKKVKNALKYGRDTINRNAIISALRTKEIELLSTKKEQSSSEGLFMKGNFKPNQPTGGKQQHSDEN
KCKQKIKCKYCKKKDHLIKDCFILKRKNQEKEKDSKGKKPEASIVVGTYVFSDALTSTQDKANQCNLLWKHDWVLDSRCNNQSCFIG