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PI0028308 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028308
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionArabinogalactan protein 22, putative
Genome locationchr05:818308..819219
RNA-Seq ExpressionPI0028308
SyntenyPI0028308
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061559.1 putative Arabinogalactan protein 22 [Cucumis melo var. makuwa]1.5e-2090.62Show/hide
Query:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH
        MSSLKLTAVP VGFLFLIILQLA+GHSHDISPA  GPSNDGAAIDQG+AYVLLL+ALAITYIIH
Subjt:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH

KAF9662510.1 hypothetical protein SADUNF_Sadunf18G0060600 [Salix dunnii]7.6e-1257.81Show/hide
Query:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH
        M+S++L A+PI+GF+FL +L+  +G     SPA  GPSNDG  IDQG+AYVLL++ALAITY++H
Subjt:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH

KAG5225627.1 arabinogalactan peptide [Salix suchowensis]2.2e-1156.25Show/hide
Query:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH
        M+S++L A+PI+GF+FL +L+  +G     SP A GPSNDG  IDQG+AY+LL++ALAITY+ H
Subjt:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH

KDP33656.1 hypothetical protein JCGZ_07227 [Jatropha curcas]7.6e-1260.94Show/hide
Query:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH
        MS + L A+PI+GF+FL +LQL +G +   SPAA GPS+DG  IDQG+AYVL+LVALA+TY+ H
Subjt:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH

KGN60622.1 hypothetical protein Csa_019490 [Cucumis sativus]3.1e-2189.06Show/hide
Query:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH
        MSSLKLTAVPIVGFLFLI+LQLA+GHSHDISPAA GPSNDGAAIDQG+AYVLLL+ALA+TYI+H
Subjt:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH

TrEMBL top hitse value%identityAlignment
A0A067KBQ4 Uncharacterized protein3.7e-1260.94Show/hide
Query:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH
        MS + L A+PI+GF+FL +LQL +G +   SPAA GPS+DG  IDQG+AYVL+LVALA+TY+ H
Subjt:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH

A0A0A0LIU0 Uncharacterized protein1.5e-2189.06Show/hide
Query:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH
        MSSLKLTAVPIVGFLFLI+LQLA+GHSHDISPAA GPSNDGAAIDQG+AYVLLL+ALA+TYI+H
Subjt:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH

A0A2C9W3S5 Uncharacterized protein1.4e-1157.81Show/hide
Query:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH
        MS +KL  +PI+G +FL ++QL+YG     SPA  GPS+DG AIDQG+A++L+LVALA+TY+IH
Subjt:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH

A0A5A7V7C0 Putative Arabinogalactan protein 227.4e-2190.62Show/hide
Query:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH
        MSSLKLTAVP VGFLFLIILQLA+GHSHDISPA  GPSNDGAAIDQG+AYVLLL+ALAITYIIH
Subjt:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH

A0A6N2KPV9 Uncharacterized protein6.3e-1256.25Show/hide
Query:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH
        M+S++L A+PI+GF+FL +L+  +G     SP A GPSNDG  IDQG+AY+LL++ALAITY++H
Subjt:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 162.9e-0645.76Show/hide
Query:  LTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH
        +T   +  F+F +IL LA   S   +PA   P++DG +IDQG+AY+L++VAL +TY+IH
Subjt:  LTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH

Q8L9T8 Arabinogalactan protein 415.9e-0751.85Show/hide
Query:  IVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH
        IV  +F I+L +A+  S   +PA   P++DG  IDQG+AYVL+LVAL +TY+IH
Subjt:  IVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH

Q9FK16 Arabinogalactan protein 227.0e-0846.88Show/hide
Query:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH
        M+SLK     +  F+ + ++ L    SH  SPA   P++DG +IDQG+AYVL++VALA+TY IH
Subjt:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH

Q9M373 Arabinogalactan protein 201.6e-0440.68Show/hide
Query:  LTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH
        +  + +  F+F +I   A   S  ++PA   P++DG +IDQG+AY+L++VAL +TY+IH
Subjt:  LTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 162.1e-0745.76Show/hide
Query:  LTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH
        +T   +  F+F +IL LA   S   +PA   P++DG +IDQG+AY+L++VAL +TY+IH
Subjt:  LTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH

AT3G61640.1 arabinogalactan protein 201.1e-0540.68Show/hide
Query:  LTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH
        +  + +  F+F +I   A   S  ++PA   P++DG +IDQG+AY+L++VAL +TY+IH
Subjt:  LTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH

AT5G24105.1 arabinogalactan protein 414.2e-0851.85Show/hide
Query:  IVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH
        IV  +F I+L +A+  S   +PA   P++DG  IDQG+AYVL+LVAL +TY+IH
Subjt:  IVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH

AT5G53250.1 arabinogalactan protein 224.9e-0946.88Show/hide
Query:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH
        M+SLK     +  F+ + ++ L    SH  SPA   P++DG +IDQG+AYVL++VALA+TY IH
Subjt:  MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCGTTGAAGCTCACTGCCGTTCCGATCGTCGGATTCTTGTTCTTGATTATTCTTCAATTGGCTTACGGCCACTCCCACGATATTTCACCGGCCGCGGGGGGCCC
TTCTAACGACGGAGCTGCAATTGACCAAGGGGTTGCGTACGTTCTTCTTCTGGTTGCTCTGGCCATTACTTACATCATCCATTAA
mRNA sequenceShow/hide mRNA sequence
TTCACCTTCTCTGTATTCAATAGAGGATAAATATTTTCTAAATTTTCAGCAATTTTTCGAGTCGATTCACTAAACATGAGTTCGTTGAAGCTCACTGCCGTTCCGATCGT
CGGATTCTTGTTCTTGATTATTCTTCAATTGGCTTACGGCCACTCCCACGATATTTCACCGGCCGCGGGGGGCCCTTCTAACGACGGAGCTGCAATTGACCAAGGGGTTG
CGTACGTTCTTCTTCTGGTTGCTCTGGCCATTACTTACATCATCCATTAATAATTTTTTATATTAATCAAATGATTTTGGGTTCGATATGTAATTTACCATTGTTATTAT
TATTATTTGTAGTTTTTCCCCCTTTATTGGTGAAGAAATTGCGTTGGGAATTTGAGAATTCATTATTATTTTTTTCAATTATTGAAATACAATTCATCATTCATTA
Protein sequenceShow/hide protein sequence
MSSLKLTAVPIVGFLFLIILQLAYGHSHDISPAAGGPSNDGAAIDQGVAYVLLLVALAITYIIH