; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0028309 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028309
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description30S ribosomal protein S17, chloroplastic
Genome locationchr01:27735901..27736961
RNA-Seq ExpressionPI0028309
SyntenyPI0028309
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019979 - Ribosomal protein S17, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059310.1 30S ribosomal protein S17 [Cucumis melo var. makuwa]2.5e-7596.34Show/hide
Query:  MSATLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MS TLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSK SSS SPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSATLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNSKKKAAEGGE-GELGIPLESQQEQV
        YQAHDPDNQFKVGDFVELEKCRPISK+KTFLAIPVPAR SKKKAAEGGE GELGIPLESQQEQV
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNSKKKAAEGGE-GELGIPLESQQEQV

XP_004141765.1 30S ribosomal protein S17, chloroplastic [Cucumis sativus]4.3e-7595.12Show/hide
Query:  MSATLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MS TLTSSSLLQIPP+QSLKKLSISSSFLHGSTPLSFLSKPSSSSSP  SQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSATLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNSKKKAAEGGE-GELGIPLESQQEQV
        YQAHDPDNQF+VGDFVELEKCRPISK+KTFLAIPVPARNSKKKA EGGE GELGIPLESQQEQV
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNSKKKAAEGGE-GELGIPLESQQEQV

XP_008462167.1 PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis melo]2.9e-7696.95Show/hide
Query:  MSATLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MS TLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSS SPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSATLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNSKKKAAEGGE-GELGIPLESQQEQV
        YQAHDPDNQFKVGDFVELEKCRPISK+KTFLAIPVPAR SKKKAAEGGE GELGIPLESQQEQV
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNSKKKAAEGGE-GELGIPLESQQEQV

XP_023548191.1 30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo]2.5e-6788.2Show/hide
Query:  MSATLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MSATL+ SS LQIPPLQ LK LS+S+SFLHGS PLSFLSKPS S S  ASQTPNFLPSI+AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSATLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNSKKKAAEGGEGELGIPLESQQE
        YQAHDPDN+FKVGDFVELEKCRPISK+KTFLAIPVPARNSK KAAE G GELGIPLESQQ+
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNSKKKAAEGGEGELGIPLESQQE

XP_038898716.1 30S ribosomal protein S17, chloroplastic [Benincasa hispida]1.2e-6990.18Show/hide
Query:  MSATLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MSATLTSSSLLQIPPLQ LKKLSIS+SFLHGS+PL F SKP    SP A QTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSATLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNSKKKAAEGGEGELGIPLESQQEQV
        YQAHDPDNQFKVGDFVELEKCRPISK+KTFLAIPVP R+SKKKAAE G+GELGIPLESQQEQV
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNSKKKAAEGGEGELGIPLESQQEQV

TrEMBL top hitse value%identityAlignment
A0A0A0K952 Uncharacterized protein2.1e-7595.12Show/hide
Query:  MSATLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MS TLTSSSLLQIPP+QSLKKLSISSSFLHGSTPLSFLSKPSSSSSP  SQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSATLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNSKKKAAEGGE-GELGIPLESQQEQV
        YQAHDPDNQF+VGDFVELEKCRPISK+KTFLAIPVPARNSKKKA EGGE GELGIPLESQQEQV
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNSKKKAAEGGE-GELGIPLESQQEQV

A0A1S3CGC8 30S ribosomal protein S17, chloroplastic1.4e-7696.95Show/hide
Query:  MSATLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MS TLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSS SPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSATLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNSKKKAAEGGE-GELGIPLESQQEQV
        YQAHDPDNQFKVGDFVELEKCRPISK+KTFLAIPVPAR SKKKAAEGGE GELGIPLESQQEQV
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNSKKKAAEGGE-GELGIPLESQQEQV

A0A5A7UW29 30S ribosomal protein S17, chloroplastic1.2e-7596.34Show/hide
Query:  MSATLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MS TLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSK SSS SPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSATLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNSKKKAAEGGE-GELGIPLESQQEQV
        YQAHDPDNQFKVGDFVELEKCRPISK+KTFLAIPVPAR SKKKAAEGGE GELGIPLESQQEQV
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNSKKKAAEGGE-GELGIPLESQQEQV

A0A6J1GQP3 30S ribosomal protein S17, chloroplastic-like1.5e-6586.79Show/hide
Query:  ATLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ
        + L+ SS LQIPPLQ LK LSIS+SFLHGS PLSFLSKPS S S  ASQTPNFLPSI+AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ
Subjt:  ATLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ

Query:  AHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNSKKKAAEGGEGELGIPLESQQE
        AHDPDN+FKVGDFVELEKCRPISK+KTFLAIPVPARNSK KAAE G GELGIPLESQ++
Subjt:  AHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNSKKKAAEGGEGELGIPLESQQE

A0A6J1JVM9 30S ribosomal protein S17, chloroplastic-like6.0e-6788.2Show/hide
Query:  MSATLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        MSATL+ SS LQIPPLQ LK LS+S+SFLHGS PLSFLSKPS S S  ASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MSATLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNSKKKAAEGGEGELGIPLESQQE
        YQAHDPDN+FKVGDFVELEKCRPISK+KTFLAIPVPARNSK KAAE G GEL IPLESQQ+
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNSKKKAAEGGEGELGIPLESQQE

SwissProt top hitse value%identityAlignment
P16180 30S ribosomal protein S17, chloroplastic1.8e-4468.53Show/hide
Query:  SLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVE
        SL+ L +SS F HGSTPLS LSKP+S  +    + P  +P IRAM+++QGRVVCAT+DKTVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V 
Subjt:  SLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVE

Query:  LEKCRPISKLKTFLAIPVPARNSKKKAAEGGEGELGIPLESQQ
        LEK RPISK K+F+A+PV AR + +KA  GG+  LG+PLESQQ
Subjt:  LEKCRPISKLKTFLAIPVPARNSKKKAAEGGEGELGIPLESQQ

P17092 30S ribosomal protein S17, chloroplastic (Fragment)2.6e-3561.42Show/hide
Query:  LSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKLKTFLAIP
        L+  S P SS            P+I+AM++++G+VVCA+ +KTVAVEV RLAPHPKY++RIR+KKKYQAHDP+N FKVGD V+L K RPISK KTFLA+P
Subjt:  LSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKLKTFLAIP

Query:  VPARNSKKKAAEGGEGELGIPLESQQE
         P+R SKK    G  GELGIPL+SQQE
Subjt:  VPARNSKKKAAEGGEGELGIPLESQQE

P82137 30S ribosomal protein S17, chloroplastic1.0e-3961.73Show/hide
Query:  SSSLLQIPPLQSLKKLSISSSFLHGSTP----LSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ
        S SLL+ PPL S    S  + FLHG+T     L   S  S SSSP +S T    P I+AMRS+QG+V+CATNDKTV VEVVRLAPHPKYKRR+R KKKYQ
Subjt:  SSSLLQIPPLQSLKKLSISSSFLHGSTP----LSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ

Query:  AHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNS---KKKAAEGGEGELGIPLESQQE
        AHDPDNQFKVGD+V+L+KCRPISK KTFLA+    R S   + K  +    ELGIPLESQ E
Subjt:  AHDPDNQFKVGDFVELEKCRPISKLKTFLAIPVPARNS---KKKAAEGGEGELGIPLESQQE

Q9TJN6 30S ribosomal protein S17, chloroplastic2.4e-2857.25Show/hide
Query:  STPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKLKTFL
        S+P   +S P     PL+S        I A R L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGD VEL+  RPISK K FL
Subjt:  STPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKLKTFL

Query:  AIPVPARNSKKKAAEGGEGELGIPLESQQEQ
        AIP+P R++++K+      +L  PL+S  +Q
Subjt:  AIPVPARNSKKKAAEGGEGELGIPLESQQEQ

Q9ZST1 30S ribosomal protein S17, chloroplastic6.9e-2855.38Show/hide
Query:  STPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKLKTFL
        S+P+       S +SP A         I+A + L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGD VEL + RPISK K FL
Subjt:  STPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKLKTFL

Query:  AIPVPARNSKKKAAEGGEGELGIPLESQQE
        A+P+P R++++K+      +L  PL+SQ +
Subjt:  AIPVPARNSKKKAAEGGEGELGIPLESQQE

Arabidopsis top hitse value%identityAlignment
AT1G79850.1 ribosomal protein S171.3e-4568.53Show/hide
Query:  SLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVE
        SL+ L +SS F HGSTPLS LSKP+S  +    + P  +P IRAM+++QGRVVCAT+DKTVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V 
Subjt:  SLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVE

Query:  LEKCRPISKLKTFLAIPVPARNSKKKAAEGGEGELGIPLESQQ
        LEK RPISK K+F+A+PV AR + +KA  GG+  LG+PLESQQ
Subjt:  LEKCRPISKLKTFLAIPVPARNSKKKAAEGGEGELGIPLESQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGCAACTCTAACTTCCTCATCCCTTCTTCAAATTCCTCCATTACAGAGCTTGAAGAAGCTCTCAATTTCCTCTTCTTTCCTCCATGGCTCAACTCCTCTCTCATT
CCTCTCTAAGCCCTCTTCCTCATCGTCGCCATTGGCCTCCCAAACCCCCAATTTTCTACCCTCCATTAGGGCCATGAGGTCCCTGCAAGGCCGCGTGGTTTGCGCCACCA
ACGACAAAACCGTCGCCGTTGAGGTAGTCCGATTAGCGCCTCATCCGAAATACAAGCGCCGGATTAGAATCAAGAAGAAGTACCAGGCACATGATCCAGATAACCAGTTC
AAGGTTGGAGATTTCGTGGAGCTTGAAAAATGCCGTCCGATTAGTAAGTTGAAGACGTTCCTGGCTATTCCGGTTCCAGCGAGGAATTCGAAGAAGAAAGCGGCGGAAGG
CGGTGAGGGAGAGCTTGGAATTCCATTGGAGTCTCAGCAAGAACAGGTTTGA
mRNA sequenceShow/hide mRNA sequence
TTTGGATAACACAAAAATCCCTAAAAAAAAAAATGTCTGCAACTCTAACTTCCTCATCCCTTCTTCAAATTCCTCCATTACAGAGCTTGAAGAAGCTCTCAATTTCCTCT
TCTTTCCTCCATGGCTCAACTCCTCTCTCATTCCTCTCTAAGCCCTCTTCCTCATCGTCGCCATTGGCCTCCCAAACCCCCAATTTTCTACCCTCCATTAGGGCCATGAG
GTCCCTGCAAGGCCGCGTGGTTTGCGCCACCAACGACAAAACCGTCGCCGTTGAGGTAGTCCGATTAGCGCCTCATCCGAAATACAAGCGCCGGATTAGAATCAAGAAGA
AGTACCAGGCACATGATCCAGATAACCAGTTCAAGGTTGGAGATTTCGTGGAGCTTGAAAAATGCCGTCCGATTAGTAAGTTGAAGACGTTCCTGGCTATTCCGGTTCCA
GCGAGGAATTCGAAGAAGAAAGCGGCGGAAGGCGGTGAGGGAGAGCTTGGAATTCCATTGGAGTCTCAGCAAGAACAGGTTTGATTGTAATCGGTTGATTTTGTGTATCT
GAATGTTGTTTGTTATTTGATGAATGACTCGTGAATGTTATATTGCTGAGACTGGACCCAAGTTGTCCGAATTTTAGAATTTTTTTTCCGAATTTTTTTTTGAGTTCTTC
ATCTCTGTCATTGCCATTGATGATGCATTTTGGAGTTGGTAACAGAATTGACGACGACGACGACGATGATGATGAACAAGTGTTGTTGCTATTCAAATTTTCTTGATTCT
TCCTTTTGGTTTAGAAAATAGTGTGATTTGAATTTCATCGTAAAGGTGTAAGAAGATTAACATCTTAGTCCTTTTTTTAAGAATAACCTAATTTTTTAGTCTCAATCTTA
GAAGTATAGTCTAAAATGAAGCTTTTAATTCCGCAGTTTTAGTTGCTCATTCTTGATTTTTGTTTAAACTAAAAATGAGAACAATGGTTACATGTTTGTTCAAATTTAAT
ATGTATGAAACAAGAAGAGAATCAAAGTGAGGTTGGAAAGTAAGTGCAAGTGTCACGTCAATGAGAACGAG
Protein sequenceShow/hide protein sequence
MSATLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPLASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQF
KVGDFVELEKCRPISKLKTFLAIPVPARNSKKKAAEGGEGELGIPLESQQEQV