CuGenDBv2

Gene ID	PI0028312
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Genome location	chr07:19042219..19042545
RNA-Seq Expression	PI0028312
Synteny	PI0028312
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_031737539.1 uncharacterized protein LOC116402431 [Cucumis sativus]

1.5e-44

83.5

Show/hide

Query:  MTYTELLPQLIQNQQLAPIPMIPIQPPYPKWYDSNARCDYHAGGAGHSTENYLALKRKVQSLINVGWLCFKKDNEKPDVNNNPLPNHENSKVNVVDCFDE
        MTYTELLPQL+ N+QLAPIP+ PIQPPYPKWYD NARCDYHAGG GHSTEN LALKRKVQSLIN GWL FKK  EKPDVNNNPLPNHENSKVN +DCF  
Subjt:  MTYTELLPQLIQNQQLAPIPMIPIQPPYPKWYDSNARCDYHAGGAGHSTENYLALKRKVQSLINVGWLCFKKDNEKPDVNNNPLPNHENSKVNVVDCFDE

Query:  ECK
        +CK
Subjt:  ECK

XP_031737550.1 uncharacterized protein LOC116402440 [Cucumis sativus]

4.0e-45

84.47

Show/hide

Query:  MTYTELLPQLIQNQQLAPIPMIPIQPPYPKWYDSNARCDYHAGGAGHSTENYLALKRKVQSLINVGWLCFKKDNEKPDVNNNPLPNHENSKVNVVDCFDE
        MTYTELLPQL+QN+QLAPIP+ PIQPPYPKWYD NARCDYHAGG GHSTEN LALKRKVQSLIN GWL FKK  EKPDVNNNPLPNHENSKVN +DCF  
Subjt:  MTYTELLPQLIQNQQLAPIPMIPIQPPYPKWYDSNARCDYHAGGAGHSTENYLALKRKVQSLINVGWLCFKKDNEKPDVNNNPLPNHENSKVNVVDCFDE

Query:  ECK
        +CK
Subjt:  ECK

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]

1.5e-44

83.5

Show/hide

Query:  MTYTELLPQLIQNQQLAPIPMIPIQPPYPKWYDSNARCDYHAGGAGHSTENYLALKRKVQSLINVGWLCFKKDNEKPDVNNNPLPNHENSKVNVVDCFDE
        MTYTELLPQL+ N+QLAPIP+ PIQPPYPKWYD NARCDYHAGG GHSTEN LALKRKVQSLIN GWL FKK  EKPDVNNNPLPNHENSKVN +DCF  
Subjt:  MTYTELLPQLIQNQQLAPIPMIPIQPPYPKWYDSNARCDYHAGGAGHSTENYLALKRKVQSLINVGWLCFKKDNEKPDVNNNPLPNHENSKVNVVDCFDE

Query:  ECK
        +CK
Subjt:  ECK

XP_031741309.1 LOW QUALITY PROTEIN: uncharacterized protein LOC105435093 [Cucumis sativus]

1.5e-44

83.5

Show/hide

Query:  MTYTELLPQLIQNQQLAPIPMIPIQPPYPKWYDSNARCDYHAGGAGHSTENYLALKRKVQSLINVGWLCFKKDNEKPDVNNNPLPNHENSKVNVVDCFDE
        MTYTELLPQL+ N+QLAPIP+ PIQPPYPKWYD NARCDYHAGG GHSTEN LALKRKVQSLIN GWL FKK  EKPDVNNNPLPNHENSKVN +DCF  
Subjt:  MTYTELLPQLIQNQQLAPIPMIPIQPPYPKWYDSNARCDYHAGGAGHSTENYLALKRKVQSLINVGWLCFKKDNEKPDVNNNPLPNHENSKVNVVDCFDE

Query:  ECK
        +CK
Subjt:  ECK

XP_031741698.1 uncharacterized protein LOC116403895 [Cucumis sativus]

1.5e-44

83.5

Show/hide

Query:  MTYTELLPQLIQNQQLAPIPMIPIQPPYPKWYDSNARCDYHAGGAGHSTENYLALKRKVQSLINVGWLCFKKDNEKPDVNNNPLPNHENSKVNVVDCFDE
        MTYTELLPQL+ N+QLAPIP+ PIQPPYPKWYD NARCDYHAGG GHSTEN LALKRKVQSLIN GWL FKK  EKPDVNNNPLPNHENSKVN +DCF  
Subjt:  MTYTELLPQLIQNQQLAPIPMIPIQPPYPKWYDSNARCDYHAGGAGHSTENYLALKRKVQSLINVGWLCFKKDNEKPDVNNNPLPNHENSKVNVVDCFDE

Query:  ECK
        +CK
Subjt:  ECK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T7R4 Ribonuclease H

4.0e-43

84.47

Show/hide

Query:  MTYTELLPQLIQNQQLAPIPMIPIQPPYPKWYDSNARCDYHAGGAGHSTENYLALKRKVQSLINVGWLCFKKDNEKPDVNNNPLPNHENSKVNVVDCFDE
        MTYTELLPQLIQN+QLAPIPMIPIQP YPKWYDSNARCDYHAGG GHSTEN LALKRKVQSLINVGWL FKK  EK +VN NPLP+HEN KVNVVD   E
Subjt:  MTYTELLPQLIQNQQLAPIPMIPIQPPYPKWYDSNARCDYHAGGAGHSTENYLALKRKVQSLINVGWLCFKKDNEKPDVNNNPLPNHENSKVNVVDCFDE

Query:  ECK
        +CK
Subjt:  ECK

A0A5A7TRL7 Ribonuclease H

5.2e-43

83.5

Show/hide

Query:  MTYTELLPQLIQNQQLAPIPMIPIQPPYPKWYDSNARCDYHAGGAGHSTENYLALKRKVQSLINVGWLCFKKDNEKPDVNNNPLPNHENSKVNVVDCFDE
        MTYTELLPQLIQN+QLAPIPMIPIQPPYPKWYDSNAR DYHAGG GHSTEN LALKRKVQSLIN GWL FKK  EKP+VN NPLP+HEN KVN VD   E
Subjt:  MTYTELLPQLIQNQQLAPIPMIPIQPPYPKWYDSNARCDYHAGGAGHSTENYLALKRKVQSLINVGWLCFKKDNEKPDVNNNPLPNHENSKVNVVDCFDE

Query:  ECK
        +CK
Subjt:  ECK

A0A5A7ULC1 Uncharacterized protein

3.1e-43

83.5

Show/hide

Query:  MTYTELLPQLIQNQQLAPIPMIPIQPPYPKWYDSNARCDYHAGGAGHSTENYLALKRKVQSLINVGWLCFKKDNEKPDVNNNPLPNHENSKVNVVDCFDE
        MTYTELLPQLIQN+QLAPIPMIPIQPPYPKWYDSNARCDYHAGG GHSTEN LALKR VQSLIN GWL FKK  EKP+VN NPLP+HEN KVN VD   E
Subjt:  MTYTELLPQLIQNQQLAPIPMIPIQPPYPKWYDSNARCDYHAGGAGHSTENYLALKRKVQSLINVGWLCFKKDNEKPDVNNNPLPNHENSKVNVVDCFDE

Query:  ECK
        +CK
Subjt:  ECK

A0A5A7V3W7 Retrotrans_gag domain-containing protein

8.1e-44

83.5

Show/hide

Query:  MTYTELLPQLIQNQQLAPIPMIPIQPPYPKWYDSNARCDYHAGGAGHSTENYLALKRKVQSLINVGWLCFKKDNEKPDVNNNPLPNHENSKVNVVDCFDE
        MTYTELLPQLIQN+QLAPIPMIPIQPPYPKWYDSNARCDYHAGG GHSTEN  ALKR VQSLIN GWL FKK  EKP+VN NPLPNHEN KVN VD   E
Subjt:  MTYTELLPQLIQNQQLAPIPMIPIQPPYPKWYDSNARCDYHAGGAGHSTENYLALKRKVQSLINVGWLCFKKDNEKPDVNNNPLPNHENSKVNVVDCFDE

Query:  ECK
        +CK
Subjt:  ECK

A0A5A7VIB2 Uncharacterized protein

5.2e-43

83.5

Show/hide

Query:  MTYTELLPQLIQNQQLAPIPMIPIQPPYPKWYDSNARCDYHAGGAGHSTENYLALKRKVQSLINVGWLCFKKDNEKPDVNNNPLPNHENSKVNVVDCFDE
        MTYTELLPQLIQN+QLA IPMIPIQP YPKWYDSNARCDYHAGG GHSTEN+LALKRKVQSLIN GWL FKK  EKP+VN NPLP+HEN KVNVVD   E
Subjt:  MTYTELLPQLIQNQQLAPIPMIPIQPPYPKWYDSNARCDYHAGGAGHSTENYLALKRKVQSLINVGWLCFKKDNEKPDVNNNPLPNHENSKVNVVDCFDE

Query:  ECK
        +CK
Subjt:  ECK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACCTATACAGAGCTTTTACCCCAGCTAATTCAAAATCAACAGTTAGCTCCTATTCCAATGATCCCTATACAACCTCCTTATCCAAAATGGTATGATTCAAATGCTCG
ATGTGATTATCATGCTGGAGGAGCGGGACACTCAACTGAAAATTATTTGGCTTTGAAAAGGAAGGTGCAATCTTTGATTAATGTTGGATGGTTATGCTTTAAAAAAGATA
ATGAGAAGCCAGATGTCAATAACAATCCACTGCCTAATCATGAAAATTCAAAGGTGAATGTTGTGGATTGTTTTGACGAAGAGTGTAAAAAAGGGTTCATGAGATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MTYTELLPQLIQNQQLAPIPMIPIQPPYPKWYDSNARCDYHAGGAGHSTENYLALKRKVQSLINVGWLCFKKDNEKPDVNNNPLPNHENSKVNVVDCFDEECKKGFMR

PI0028312 (gene) of Melon (PI 482460) v1 genome