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PI0028364 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028364
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr11:17309442..17309801
RNA-Seq ExpressionPI0028364
SyntenyPI0028364
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR025314 - Domain of unknown function DUF4219


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051582.1 uncharacterized protein E6C27_scaffold174G001240 [Cucumis melo var. makuwa]6.8e-1474.19Show/hide
Query:  MANGGMNSLQL-PMLTKLNYDSWSIKIKALLGAQDLWEIVENGFQEVEAGADQAQRDVLKET
        MAN GMN   +  MLTKLNY+SWSIK KALLGA+DL EI ENGF+EVEAG +QAQ+DVLKET
Subjt:  MANGGMNSLQL-PMLTKLNYDSWSIKIKALLGAQDLWEIVENGFQEVEAGADQAQRDVLKET

XP_038875032.1 uncharacterized protein LOC120067555 [Benincasa hispida]1.6e-1586.27Show/hide
Query:  MLTKLNYDSWSIKIKALLGAQDLWEIVENGFQEVEAGADQAQRDVLKETRK
        MLTKLNYD+WSIKIKALLGAQD+WEI+ENGFQE EA  DQAQRD LKETRK
Subjt:  MLTKLNYDSWSIKIKALLGAQDLWEIVENGFQEVEAGADQAQRDVLKETRK

XP_038875054.1 uncharacterized protein LOC120067579 [Benincasa hispida]4.0e-2287.3Show/hide
Query:  MANGGMNSLQLPMLTKLNYDSWSIKIKALLGAQDLWEIVENGFQEVEAGADQAQRDVLKETRK
        MANGG+ SLQLPMLTKLNYD+WSIKIKALLGAQD+WEIVE GFQE EAG DQAQRD LKETRK
Subjt:  MANGGMNSLQLPMLTKLNYDSWSIKIKALLGAQDLWEIVENGFQEVEAGADQAQRDVLKETRK

XP_038877901.1 uncharacterized protein LOC120070118 [Benincasa hispida]3.1e-2287.3Show/hide
Query:  MANGGMNSLQLPMLTKLNYDSWSIKIKALLGAQDLWEIVENGFQEVEAGADQAQRDVLKETRK
        MANGG++SLQLPMLTKLNYD+WSIKIKALLG QD+WEIVEN FQE EAGADQAQRD LKETRK
Subjt:  MANGGMNSLQLPMLTKLNYDSWSIKIKALLGAQDLWEIVENGFQEVEAGADQAQRDVLKETRK

XP_038882219.1 uncharacterized protein LOC120073442 [Benincasa hispida]8.3e-2082.54Show/hide
Query:  MANGGMNSLQLPMLTKLNYDSWSIKIKALLGAQDLWEIVENGFQEVEAGADQAQRDVLKETRK
        MAN G+ SLQLPMLTKLNYD+WSIKIK LLGAQ++WEIVENGFQE EA A+QAQRD LKETRK
Subjt:  MANGGMNSLQLPMLTKLNYDSWSIKIKALLGAQDLWEIVENGFQEVEAGADQAQRDVLKETRK

TrEMBL top hitse value%identityAlignment
A0A0B2NTW4 DUF4219 domain-containing protein (Fragment)9.0e-1264.52Show/hide
Query:  NGGMNSLQLPMLTKLNYDSWSIKIKALLGAQDLWEIVENGFQEV-EAGADQAQRDVLKETRK
        NGG    Q+PMLTK NYD+WSIK+KALLGAQD+W+IVENGF+E  EA   Q  ++ LKE+RK
Subjt:  NGGMNSLQLPMLTKLNYDSWSIKIKALLGAQDLWEIVENGFQEV-EAGADQAQRDVLKETRK

A0A0B2PSL4 DUF4219 domain-containing protein (Fragment)9.0e-1264.52Show/hide
Query:  NGGMNSLQLPMLTKLNYDSWSIKIKALLGAQDLWEIVENGFQEV-EAGADQAQRDVLKETRK
        NGG    Q+PMLTK NYD+WSIK+KALLGAQD+W+IVENGF+E  EA   Q  ++ LKE+RK
Subjt:  NGGMNSLQLPMLTKLNYDSWSIKIKALLGAQDLWEIVENGFQEV-EAGADQAQRDVLKETRK

A0A445G8E4 Retrovirus-related Pol polyprotein from transposon TNT 1-948.1e-1365.62Show/hide
Query:  MANGGMNSLQLPMLTKLNYDSWSIKIKALLGAQDLWEIVENGFQEV-EAGADQAQRDVLKETRK
        MANGG    Q+PMLTK NYD+WSIK+KALLGAQD+W+IVENGF+E  EA   Q  ++ LKE+RK
Subjt:  MANGGMNSLQLPMLTKLNYDSWSIKIKALLGAQDLWEIVENGFQEV-EAGADQAQRDVLKETRK

A0A445J0L7 Retrovirus-related Pol polyprotein from transposon TNT 1-948.1e-1365.62Show/hide
Query:  MANGGMNSLQLPMLTKLNYDSWSIKIKALLGAQDLWEIVENGFQEV-EAGADQAQRDVLKETRK
        MANGG    Q+PMLTK NYD+WSIK+KALLGAQD+W+IVENGF+E  EA   Q  ++ LKE+RK
Subjt:  MANGGMNSLQLPMLTKLNYDSWSIKIKALLGAQDLWEIVENGFQEV-EAGADQAQRDVLKETRK

A0A5A7U759 Uncharacterized protein3.3e-1474.19Show/hide
Query:  MANGGMNSLQL-PMLTKLNYDSWSIKIKALLGAQDLWEIVENGFQEVEAGADQAQRDVLKET
        MAN GMN   +  MLTKLNY+SWSIK KALLGA+DL EI ENGF+EVEAG +QAQ+DVLKET
Subjt:  MANGGMNSLQL-PMLTKLNYDSWSIKIKALLGAQDLWEIVENGFQEVEAGADQAQRDVLKET

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G48720.1 unknown protein6.8e-1255.36Show/hide
Query:  QLPMLTKLNYDSWSIKIKALLGAQDLWEIVENGF--QEVEAGADQAQRDVLKETRK
        Q+P+LTK NYD+WS+++KA+LGA D+WEIVE GF   E E    Q Q+D L+++RK
Subjt:  QLPMLTKLNYDSWSIKIKALLGAQDLWEIVENGF--QEVEAGADQAQRDVLKETRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAACGGTGGGATGAATTCGCTTCAATTACCGATGCTTACCAAACTTAACTATGATAGTTGGAGCATCAAGATAAAAGCGTTACTAGGAGCACAAGACTTGTGGGA
GATCGTTGAGAATGGTTTCCAAGAGGTGGAAGCTGGAGCCGACCAAGCACAAAGAGACGTGCTAAAAGAGACAAGAAAGCCCTCTATATCTTGTACCAATCAGTTGATGA
AGATACATTTCAAACCATTTTTGATGCTGAAACATCAAAGGCAGCATGGGACAAGCTCCAATCAACTCATAGAGGAGCTGATCGTGTTAAAAAAGTACGATTACAAACTT
TACGTGGTGAGTTTGAATCTTTACAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAACGGTGGGATGAATTCGCTTCAATTACCGATGCTTACCAAACTTAACTATGATAGTTGGAGCATCAAGATAAAAGCGTTACTAGGAGCACAAGACTTGTGGGA
GATCGTTGAGAATGGTTTCCAAGAGGTGGAAGCTGGAGCCGACCAAGCACAAAGAGACGTGCTAAAAGAGACAAGAAAGCCCTCTATATCTTGTACCAATCAGTTGATGA
AGATACATTTCAAACCATTTTTGATGCTGAAACATCAAAGGCAGCATGGGACAAGCTCCAATCAACTCATAGAGGAGCTGATCGTGTTAAAAAAGTACGATTACAAACTT
TACGTGGTGAGTTTGAATCTTTACAAATGA
Protein sequenceShow/hide protein sequence
MANGGMNSLQLPMLTKLNYDSWSIKIKALLGAQDLWEIVENGFQEVEAGADQAQRDVLKETRKPSISCTNQLMKIHFKPFLMLKHQRQHGTSSNQLIEELIVLKKYDYKL
YVVSLNLYK