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PI0028389 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028389
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr07:16857657..16858648
RNA-Seq ExpressionPI0028389
SyntenyPI0028389
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054520.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]1.2e-1751.82Show/hide
Query:  THPAAKWLLNKSFPI------------TTTACVETFVDVGSNVLGGYEEFSTDDANDPEIPMIYSQGLDMSPDDIMDTRPSRSSEGRNALAKAKGSGEDM
        +H A K  LNK F                 AC+ETFVDVGSNV GGYE FS +D N+ +IPM+YSQGLDM P DIM T+PS SSEGR   A  KGS E  
Subjt:  THPAAKWLLNKSFPI------------TTTACVETFVDVGSNVLGGYEEFSTDDANDPEIPMIYSQGLDMSPDDIMDTRPSRSSEGRNALAKAKGSGEDM

Query:  QLRLSTSFAM
          +L  SF +
Subjt:  QLRLSTSFAM

KAA0056167.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-1553.19Show/hide
Query:  THPAAKWLLNKSFPITTTAC------------VETFVDVGSNVLGGYEEFSTDDANDPEIPMIYSQGLDMSPDDIMDTRPSRSSEGRNALAKAK
        +H  AK +LN+SF      C            VETFV+VGSNV+GGYE F  +D ND EIP +YSQGLDMS DDIM TRP ++S+GRNA +++K
Subjt:  THPAAKWLLNKSFPITTTAC------------VETFVDVGSNVLGGYEEFSTDDANDPEIPMIYSQGLDMSPDDIMDTRPSRSSEGRNALAKAK

KAA0056468.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-2054.24Show/hide
Query:  HPAAKWLLNKSFPITT------TACV-------ETFVDVGSNVLGGYEEFSTDDANDPEIPMIYSQGLDMSPDDIMDTRPSRSSEGRNALAKAKGSGEDM
        HP AK  L   FPITT       +C        ETF  V SNVLGGYE F  DD ND E PM+Y QGLD S DDIM TRP R SE     A+A+GS + +
Subjt:  HPAAKWLLNKSFPITT------TACV-------ETFVDVGSNVLGGYEEFSTDDANDPEIPMIYSQGLDMSPDDIMDTRPSRSSEGRNALAKAKGSGEDM

Query:  QLRLSTSFAMQWNLRMIS
        +L+  TSFAMQWNLRM S
Subjt:  QLRLSTSFAMQWNLRMIS

TYJ98275.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]7.9e-1762.5Show/hide
Query:  ACVETFVDVGSNVLGGYEEFSTDDANDPEIPMIYSQGLDMSPDDIMDTRPSRSSEGRNALAKAKGSGEDMQLRLSTSFAM
        AC+ETFVDVGSNV GGYE FS +D N+ +IPM+YSQGLDM P DIM T+PS SSEGR   A  KGS E    +L  SF +
Subjt:  ACVETFVDVGSNVLGGYEEFSTDDANDPEIPMIYSQGLDMSPDDIMDTRPSRSSEGRNALAKAKGSGEDMQLRLSTSFAM

TYK29059.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-2054.24Show/hide
Query:  HPAAKWLLNKSFPITT------TACV-------ETFVDVGSNVLGGYEEFSTDDANDPEIPMIYSQGLDMSPDDIMDTRPSRSSEGRNALAKAKGSGEDM
        HP AK  L   FPITT       +C        ETF  V SNVLGGYE F  DD ND E PM+Y QGLD S DDIM TRP R SE     A+A+GS + +
Subjt:  HPAAKWLLNKSFPITT------TACV-------ETFVDVGSNVLGGYEEFSTDDANDPEIPMIYSQGLDMSPDDIMDTRPSRSSEGRNALAKAKGSGEDM

Query:  QLRLSTSFAMQWNLRMIS
        +L+  TSFAMQWNLRM S
Subjt:  QLRLSTSFAMQWNLRMIS

TrEMBL top hitse value%identityAlignment
A0A5A7UGY0 RING-H2 finger protein ATL665.9e-1851.82Show/hide
Query:  THPAAKWLLNKSFPI------------TTTACVETFVDVGSNVLGGYEEFSTDDANDPEIPMIYSQGLDMSPDDIMDTRPSRSSEGRNALAKAKGSGEDM
        +H A K  LNK F                 AC+ETFVDVGSNV GGYE FS +D N+ +IPM+YSQGLDM P DIM T+PS SSEGR   A  KGS E  
Subjt:  THPAAKWLLNKSFPI------------TTTACVETFVDVGSNVLGGYEEFSTDDANDPEIPMIYSQGLDMSPDDIMDTRPSRSSEGRNALAKAKGSGEDM

Query:  QLRLSTSFAM
          +L  SF +
Subjt:  QLRLSTSFAM

A0A5A7UMZ6 Retrotransposon protein9.7e-2154.24Show/hide
Query:  HPAAKWLLNKSFPITT------TACV-------ETFVDVGSNVLGGYEEFSTDDANDPEIPMIYSQGLDMSPDDIMDTRPSRSSEGRNALAKAKGSGEDM
        HP AK  L   FPITT       +C        ETF  V SNVLGGYE F  DD ND E PM+Y QGLD S DDIM TRP R SE     A+A+GS + +
Subjt:  HPAAKWLLNKSFPITT------TACV-------ETFVDVGSNVLGGYEEFSTDDANDPEIPMIYSQGLDMSPDDIMDTRPSRSSEGRNALAKAKGSGEDM

Query:  QLRLSTSFAMQWNLRMIS
        +L+  TSFAMQWNLRM S
Subjt:  QLRLSTSFAMQWNLRMIS

A0A5D3BIM9 RING-H2 finger protein ATL663.8e-1762.5Show/hide
Query:  ACVETFVDVGSNVLGGYEEFSTDDANDPEIPMIYSQGLDMSPDDIMDTRPSRSSEGRNALAKAKGSGEDMQLRLSTSFAM
        AC+ETFVDVGSNV GGYE FS +D N+ +IPM+YSQGLDM P DIM T+PS SSEGR   A  KGS E    +L  SF +
Subjt:  ACVETFVDVGSNVLGGYEEFSTDDANDPEIPMIYSQGLDMSPDDIMDTRPSRSSEGRNALAKAKGSGEDMQLRLSTSFAM

A0A5D3CIS8 Retrotransposon protein9.4e-1655.32Show/hide
Query:  THPAAKWLLNKSF------------PITTTACVETFVDVGSNVLGGYEEFSTDDANDPEIPMIYSQGLDMSPDDIMDTRPSRSSEGRNALAKAK
        +H AAK LLN+SF               T   VETFV+VGSNV+GGYE F  +D ND EIP +YSQGLDMS DDIM TRP ++S+GRNA +++K
Subjt:  THPAAKWLLNKSF------------PITTTACVETFVDVGSNVLGGYEEFSTDDANDPEIPMIYSQGLDMSPDDIMDTRPSRSSEGRNALAKAK

A0A5D3E057 Retrotransposon protein9.7e-2154.24Show/hide
Query:  HPAAKWLLNKSFPITT------TACV-------ETFVDVGSNVLGGYEEFSTDDANDPEIPMIYSQGLDMSPDDIMDTRPSRSSEGRNALAKAKGSGEDM
        HP AK  L   FPITT       +C        ETF  V SNVLGGYE F  DD ND E PM+Y QGLD S DDIM TRP R SE     A+A+GS + +
Subjt:  HPAAKWLLNKSFPITT------TACV-------ETFVDVGSNVLGGYEEFSTDDANDPEIPMIYSQGLDMSPDDIMDTRPSRSSEGRNALAKAKGSGEDM

Query:  QLRLSTSFAMQWNLRMIS
        +L+  TSFAMQWNLRM S
Subjt:  QLRLSTSFAMQWNLRMIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTTACTCATCCTGCCGCCAAATGGCTCCTTAACAAATCCTTTCCCATTACGACGACAGCATGCGTAGAGACATTTGTCGATGTTGGGTCGAATGTGTTAGGAGG
GTACGAGGAATTTTCTACTGACGATGCTAACGATCCAGAGATCCCTATGATATATAGTCAAGGACTAGACATGTCGCCTGATGACATCATGGACACACGACCTAGTCGAT
CAAGTGAGGGTAGGAATGCTTTGGCAAAAGCAAAAGGAAGCGGGGAGGACATGCAACTGAGACTATCGACATCATTCGCCATGCAATGGAATTTGCGAATGATCAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTTACTCATCCTGCCGCCAAATGGCTCCTTAACAAATCCTTTCCCATTACGACGACAGCATGCGTAGAGACATTTGTCGATGTTGGGTCGAATGTGTTAGGAGG
GTACGAGGAATTTTCTACTGACGATGCTAACGATCCAGAGATCCCTATGATATATAGTCAAGGACTAGACATGTCGCCTGATGACATCATGGACACACGACCTAGTCGAT
CAAGTGAGGGTAGGAATGCTTTGGCAAAAGCAAAAGGAAGCGGGGAGGACATGCAACTGAGACTATCGACATCATTCGCCATGCAATGGAATTTGCGAATGATCAGTTGA
Protein sequenceShow/hide protein sequence
MGVTHPAAKWLLNKSFPITTTACVETFVDVGSNVLGGYEEFSTDDANDPEIPMIYSQGLDMSPDDIMDTRPSRSSEGRNALAKAKGSGEDMQLRLSTSFAMQWNLRMIS