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PI0028393 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028393
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr03:15250628..15250831
RNA-Seq ExpressionPI0028393
SyntenyPI0028393
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031989.1 putative Retrotransposon protein [Cucumis melo var. makuwa]7.0e-1665.08Show/hide
Query:  MTVVEYEKKFIELAKYALAFVTNEINKCKRFEDGFRIKIRAPMKTNMDWLDFSKLVEADMRVE
        M ++EYEK+FIELAKYAL FVT+E++KCKRFE+G R +IRAP+  NMDW + SK+V+  MRVE
Subjt:  MTVVEYEKKFIELAKYALAFVTNEINKCKRFEDGFRIKIRAPMKTNMDWLDFSKLVEADMRVE

KAA0033334.1 uncharacterized protein E6C27_scaffold845G001530 [Cucumis melo var. makuwa]3.6e-1261.9Show/hide
Query:  MTVVEYEKKFIELAKYALAFVTNEINKCKRFEDGFRIKIRAPMKTNMDWLDFSKLVEADMRVE
        M+V EYE +F +LAK ALAFV +EI+KCKRFE G + +IR  +  +M+WLDF+KLVEA MRVE
Subjt:  MTVVEYEKKFIELAKYALAFVTNEINKCKRFEDGFRIKIRAPMKTNMDWLDFSKLVEADMRVE

KAA0054200.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]1.2e-1263.49Show/hide
Query:  MTVVEYEKKFIELAKYALAFVTNEINKCKRFEDGFRIKIRAPMKTNMDWLDFSKLVEADMRVE
        M V EYEKKF ELAKYALAFV +E++KC +FEDG  I+I A +  + +WLDFSKLVEA MR++
Subjt:  MTVVEYEKKFIELAKYALAFVTNEINKCKRFEDGFRIKIRAPMKTNMDWLDFSKLVEADMRVE

KAA0062762.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]2.2e-1469.84Show/hide
Query:  MTVVEYEKKFIELAKYALAFVTNEINKCKRFEDGFRIKIRAPMKTNMDWLDFSKLVEADMRVE
        MTV EYEK F ELAKYALAFV NE +KCKRFE+G R +IRA +  +MDW DFSKLVE  M VE
Subjt:  MTVVEYEKKFIELAKYALAFVTNEINKCKRFEDGFRIKIRAPMKTNMDWLDFSKLVEADMRVE

WP_217833235.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]5.5e-1363.49Show/hide
Query:  MTVVEYEKKFIELAKYALAFVTNEINKCKRFEDGFRIKIRAPMKTNMDWLDFSKLVEADMRVE
        MTV EYEKKF ELAKYALA +  E  KCKRFEDG R +IR  +  + +W DF+KLVEA MR E
Subjt:  MTVVEYEKKFIELAKYALAFVTNEINKCKRFEDGFRIKIRAPMKTNMDWLDFSKLVEADMRVE

TrEMBL top hitse value%identityAlignment
A0A5A7SQ53 Retrotrans_gag domain-containing protein1.7e-1261.9Show/hide
Query:  MTVVEYEKKFIELAKYALAFVTNEINKCKRFEDGFRIKIRAPMKTNMDWLDFSKLVEADMRVE
        M+V EYE +F +LAK ALAFV +EI+KCKRFE G + +IR  +  +M+WLDF+KLVEA MRVE
Subjt:  MTVVEYEKKFIELAKYALAFVTNEINKCKRFEDGFRIKIRAPMKTNMDWLDFSKLVEADMRVE

A0A5A7V3F2 Zf-CCHC domain-containing protein1.1e-1469.84Show/hide
Query:  MTVVEYEKKFIELAKYALAFVTNEINKCKRFEDGFRIKIRAPMKTNMDWLDFSKLVEADMRVE
        MTV EYEK F ELAKYALAFV NE +KCKRFE+G R +IRA +  +MDW DFSKLVE  M VE
Subjt:  MTVVEYEKKFIELAKYALAFVTNEINKCKRFEDGFRIKIRAPMKTNMDWLDFSKLVEADMRVE

A0A5D3CT88 Zf-CCHC domain-containing protein6.0e-1363.49Show/hide
Query:  MTVVEYEKKFIELAKYALAFVTNEINKCKRFEDGFRIKIRAPMKTNMDWLDFSKLVEADMRVE
        M V EYEKKF ELAKYALAFV +E++KC +FEDG  I+I A +  + +WLDFSKLVEA MR++
Subjt:  MTVVEYEKKFIELAKYALAFVTNEINKCKRFEDGFRIKIRAPMKTNMDWLDFSKLVEADMRVE

A0A5D3D2P1 Putative Retrotransposon protein3.4e-1665.08Show/hide
Query:  MTVVEYEKKFIELAKYALAFVTNEINKCKRFEDGFRIKIRAPMKTNMDWLDFSKLVEADMRVE
        M ++EYEK+FIELAKYAL FVT+E++KCKRFE+G R +IRAP+  NMDW + SK+V+  MRVE
Subjt:  MTVVEYEKKFIELAKYALAFVTNEINKCKRFEDGFRIKIRAPMKTNMDWLDFSKLVEADMRVE

A0A5D3DDC6 Retrotrans_gag domain-containing protein2.3e-1261.9Show/hide
Query:  MTVVEYEKKFIELAKYALAFVTNEINKCKRFEDGFRIKIRAPMKTNMDWLDFSKLVEADMRVE
        M+V EYE +F +LAK ALAFV +EI+KCKRFE G + +IR  +  +M+WLDF+KLVEA MRVE
Subjt:  MTVVEYEKKFIELAKYALAFVTNEINKCKRFEDGFRIKIRAPMKTNMDWLDFSKLVEADMRVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGTCGTAGAGTATGAGAAAAAATTTATTGAATTAGCTAAGTACGCATTAGCCTTTGTGACTAATGAGATAAACAAATGCAAACGGTTTGAAGATGGTTTTCGAAT
TAAGATTAGAGCACCGATGAAGACCAACATGGACTGGTTAGATTTTTCTAAATTAGTTGAAGCTGACATGAGAGTAGAGATGCTTGATAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGTCGTAGAGTATGAGAAAAAATTTATTGAATTAGCTAAGTACGCATTAGCCTTTGTGACTAATGAGATAAACAAATGCAAACGGTTTGAAGATGGTTTTCGAAT
TAAGATTAGAGCACCGATGAAGACCAACATGGACTGGTTAGATTTTTCTAAATTAGTTGAAGCTGACATGAGAGTAGAGATGCTTGATAGATGA
Protein sequenceShow/hide protein sequence
MTVVEYEKKFIELAKYALAFVTNEINKCKRFEDGFRIKIRAPMKTNMDWLDFSKLVEADMRVEMLDR