; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0028409 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028409
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionLaminin G, domain-containing 2
Genome locationchr10:21669025..21670115
RNA-Seq ExpressionPI0028409
SyntenyPI0028409
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GIL65529.1 hypothetical protein Vafri_19272, partial [Volvox africanus]8.8e-0840.31Show/hide
Query:  LHHHPTQPTLRLRP-RHPIPPKLRRRHHHPIPPTLRLRRRHPIPPTLRLHRHPTQRTLRLHHHHPTQLTLHHHRRHPTQLTLRLHRHHPTQLTLRLHRH-
        LH HPT       P RH + P  R RHH P        R HP    L  HRH  +      H HP    LHHH  H      R H HH   L  RLHRH 
Subjt:  LHHHPTQPTLRLRP-RHPIPPKLRRRHHHPIPPTLRLRRRHPIPPTLRLHRHPTQRTLRLHHHHPTQLTLHHHRRHPTQLTLRLHRHHPTQLTLRLHRH-

Query:  -HPTPLTLRLHR-----HHPTQLTLRLHRHHPTPLTLRLHRHHPTQLTLLRPRHHPTLLTLLHRHLIPPLSYHP-HRHLMWVHLHHRRRRP
         H  PL   LH      HHP +     H HH   L  R H HH   L  L  R H  LL  LHR    PL  HP HRH +  HLHHR   P
Subjt:  -HPTPLTLRLHR-----HHPTQLTLRLHRHHPTPLTLRLHRHHPTQLTLLRPRHHPTLLTLLHRHLIPPLSYHP-HRHLMWVHLHHRRRRP

GIL65530.1 hypothetical protein Vafri_19272, partial [Volvox africanus]8.8e-0840.31Show/hide
Query:  LHHHPTQPTLRLRP-RHPIPPKLRRRHHHPIPPTLRLRRRHPIPPTLRLHRHPTQRTLRLHHHHPTQLTLHHHRRHPTQLTLRLHRHHPTQLTLRLHRH-
        LH HPT       P RH + P  R RHH P        R HP    L  HRH  +      H HP    LHHH  H      R H HH   L  RLHRH 
Subjt:  LHHHPTQPTLRLRP-RHPIPPKLRRRHHHPIPPTLRLRRRHPIPPTLRLHRHPTQRTLRLHHHHPTQLTLHHHRRHPTQLTLRLHRHHPTQLTLRLHRH-

Query:  -HPTPLTLRLHR-----HHPTQLTLRLHRHHPTPLTLRLHRHHPTQLTLLRPRHHPTLLTLLHRHLIPPLSYHP-HRHLMWVHLHHRRRRP
         H  PL   LH      HHP +     H HH   L  R H HH   L  L  R H  LL  LHR    PL  HP HRH +  HLHHR   P
Subjt:  -HPTPLTLRLHR-----HHPTQLTLRLHRHHPTPLTLRLHRHHPTQLTLLRPRHHPTLLTLLHRHLIPPLSYHP-HRHLMWVHLHHRRRRP

XP_014009943.1 PREDICTED: putative uncharacterized protein FLJ46204 isoform X1 [Salmo salar]6.1e-0933.1Show/hide
Query:  PTLRLRPRHPIPPKLRRRHHHPIPPTLRLRRRHPIPPTLRLHRHPTQRTLRLHHHHPTQLTLHHHRRHPTQLTLRLHRHHPTQLTLRLHRHHPTPLTLRL
        PTL+++  H   P L+    H   P+L+  + H          HP+ +T + H +HP+  T+  H  HP+  T + H HHP+  T   H +HP+  T + 
Subjt:  PTLRLRPRHPIPPKLRRRHHHPIPPTLRLRRRHPIPPTLRLHRHPTQRTLRLHHHHPTQLTLHHHRRHPTQLTLRLHRHHPTQLTLRLHRHHPTPLTLRL

Query:  HRHHPTQLTLRLHRHHPTPLTLRLHRHHPTQLTLLRPRHHPTLLT
        H HHP+  T + H +HP+  T + H HHP+  T     +HP+L T
Subjt:  HRHHPTQLTLRLHRHHPTPLTLRLHRHHPTQLTLLRPRHHPTLLT

XP_014009944.1 PREDICTED: putative uncharacterized protein FLJ46204 isoform X2 [Salmo salar]2.3e-0835.43Show/hide
Query:  HHPIPPTLRLRRRHPIPPTLRLHR-HPTQRTLRLHHHHPTQLTLHHHRRHPTQLTLRLHRHHPTQLTLRLHRHHPTPLTLRLHRHHPTQLTLRLHRHHPT
        +HP   T +    HP   T + H  HP+ +T + H +HP+  T+  H  HP+  T + H HHP+  T   H +HP+  T + H HHP+  T + H +HP+
Subjt:  HHPIPPTLRLRRRHPIPPTLRLHR-HPTQRTLRLHHHHPTQLTLHHHRRHPTQLTLRLHRHHPTQLTLRLHRHHPTPLTLRLHRHHPTQLTLRLHRHHPT

Query:  PLTLRLHRHHPTQLTLLRPRHHPTLLT
          T + H HHP+  T     +HP+L T
Subjt:  PLTLRLHRHHPTQLTLLRPRHHPTLLT

XP_033730693.1 SAFB-like transcription modulator [Pecten maximus]4.8e-0640.67Show/hide
Query:  LRLRPRHPIPPKLRRRHHHPIPPTLRLRRRHPIPPTLRL-HRHPTQRTLRLHHHHPTQLTLHHHRRHPTQLTLRLHRHHPTQLTLRLHRHHPTPLTLRLH
        LRL+ R P+  +LR +   P+P  LRL+RR P+   LRL  R P  R LRL    P    L   RR P    LRL R  P    LRL R  P    LRL 
Subjt:  LRLRPRHPIPPKLRRRHHHPIPPTLRLRRRHPIPPTLRL-HRHPTQRTLRLHHHHPTQLTLHHHRRHPTQLTLRLHRHHPTQLTLRLHRHHPTPLTLRLH

Query:  RHHPTQLTLRLHRHHPTPLTLRLHRHHPTQLTLLRPRHHPTLLTLLHRHL
        R  P    LRL R  P    LRL R  P    L   R  P     LHR L
Subjt:  RHHPTQLTLRLHRHHPTPLTLRLHRHHPTQLTLLRPRHHPTLLTLLHRHL

TrEMBL top hitse value%identityAlignment
A0A0A0KV03 Uncharacterized protein8.0e-3971.32Show/hide
Query:  LRLHHHHPTQLTLHHHRRHPTQLTLRLHRHHPTQLTLRLHRHHPTPLTLRLHRHHPTQLTLRLHRHHPTPLTLRLHRHHPTQLTLLRPRHHPTLLTLLHR
        + L  HHPT L LH  RRHPT  TL LHRHHPT LTL LHRHHP PLTLRLHRHHP   TLRLHRHHP PLTLRLHRHHPTQLTL  P  HP   T  H 
Subjt:  LRLHHHHPTQLTLHHHRRHPTQLTLRLHRHHPTQLTLRLHRHHPTPLTLRLHRHHPTQLTLRLHRHHPTPLTLRLHRHHPTQLTLLRPRHHPTLLTLLHR

Query:  HLIPPLSYHPHRHLMWVHLHHRRRRPTKH
        HLIP L+YH HR L WVHLHHRR+R  +H
Subjt:  HLIPPLSYHPHRHLMWVHLHHRRRRPTKH

A0A1S3N383 Uncharacterized protein3.0e-0933.1Show/hide
Query:  PTLRLRPRHPIPPKLRRRHHHPIPPTLRLRRRHPIPPTLRLHRHPTQRTLRLHHHHPTQLTLHHHRRHPTQLTLRLHRHHPTQLTLRLHRHHPTPLTLRL
        PTL+++  H   P L+    H   P+L+  + H          HP+ +T + H +HP+  T+  H  HP+  T + H HHP+  T   H +HP+  T + 
Subjt:  PTLRLRPRHPIPPKLRRRHHHPIPPTLRLRRRHPIPPTLRLHRHPTQRTLRLHHHHPTQLTLHHHRRHPTQLTLRLHRHHPTQLTLRLHRHHPTPLTLRL

Query:  HRHHPTQLTLRLHRHHPTPLTLRLHRHHPTQLTLLRPRHHPTLLT
        H HHP+  T + H +HP+  T + H HHP+  T     +HP+L T
Subjt:  HRHHPTQLTLRLHRHHPTPLTLRLHRHHPTQLTLLRPRHHPTLLT

A0A1S3N3A1 Uncharacterized protein1.1e-0835.43Show/hide
Query:  HHPIPPTLRLRRRHPIPPTLRLHR-HPTQRTLRLHHHHPTQLTLHHHRRHPTQLTLRLHRHHPTQLTLRLHRHHPTPLTLRLHRHHPTQLTLRLHRHHPT
        +HP   T +    HP   T + H  HP+ +T + H +HP+  T+  H  HP+  T + H HHP+  T   H +HP+  T + H HHP+  T + H +HP+
Subjt:  HHPIPPTLRLRRRHPIPPTLRLHR-HPTQRTLRLHHHHPTQLTLHHHRRHPTQLTLRLHRHHPTQLTLRLHRHHPTPLTLRLHRHHPTQLTLRLHRHHPT

Query:  PLTLRLHRHHPTQLTLLRPRHHPTLLT
          T + H HHP+  T     +HP+L T
Subjt:  PLTLRLHRHHPTQLTLLRPRHHPTLLT

A0A669EGG8 Uncharacterized protein6.8e-0640.58Show/hide
Query:  HLLHHHPTQPTLRLRPRHPIPPKLR-----RRHHHPIPPTLRLRRRHPIPPTLRLHRHPTQRTLRLHHHHPTQLTLHHHRRHPTQLTLRLHRHHPTQLTL
        HLLH    QP   L PR   PP LR      R   P PP LRLR   P PP LR  R   +  L LH  HP  + L  H  HP  + LRLH  HP  + L
Subjt:  HLLHHHPTQPTLRLRPRHPIPPKLR-----RRHHHPIPPTLRLRRRHPIPPTLRLHRHPTQRTLRLHHHHPTQLTLHHHRRHPTQLTLRLHRHHPTQLTL

Query:  RLHRHHPTPLTLRLHRHHPTQLTLRLHRHHPTPLTLRLHRHHP----TQLTLLRPR------HHPTLLTLLHR---------HLIPP--LSYHPHRHLMW
        RLH  HP  + LRLH  H   + LRLH  HP  + LRLH  HP      L L  PR       HP L+ L H+         H + P  L  HP R    
Subjt:  RLHRHHPTPLTLRLHRHHPTQLTLRLHRHHPTPLTLRLHRHHP----TQLTLLRPR------HHPTLLTLLHR---------HLIPP--LSYHPHRHLMW

Query:  VHLHHRR
         HL  RR
Subjt:  VHLHHRR

A0A7S4BK42 Hypothetical protein (Fragment)5.2e-0643.93Show/hide
Query:  RRRHHHPIPPTLRL--RRRH--PIPPTLRLHRHPTQRTLRLHHHHPTQLTLHHHRRHPTQLTLRLHRHHPTQLTLRLHRHHPTPLTLRLHRHHPTQLTLR
        RRRHHH +  T  L  RR H  PI    R H H     L LHHHH    + HHHRR    L L LHRHH      RLH H  T   LRLH  HP  LT  
Subjt:  RRRHHHPIPPTLRL--RRRH--PIPPTLRLHRHPTQRTLRLHHHHPTQLTLHHHRRHPTQLTLRLHRHHPTQLTLRLHRHHPTPLTLRLHRHHPTQLTLR

Query:  LHRHH-PTPLTLRLHRHH----PTQLTL------LRPRHHPTLLTLLHRHLIPPLSYHPHRHLMWVHLHHRRR
         H HH   PL L  HR H    P  L L       R RH   L  LL  HL P    H H HL+ + L HR R
Subjt:  LHRHH-PTPLTLRLHRHH----PTQLTL------LRPRHHPTLLTLLHRHLIPPLSYHPHRHLMWVHLHHRRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCTCCTCCACCACCATCCAACACAACCGACACTCCGCCTCCGCCCCCGCCATCCAATCCCACCGAAACTCCGCCGCCGCCACCACCATCCAATACCACCGACACT
CCGCCTCCGCCGCCGCCATCCAATACCACCGACACTCCGCCTCCACCGCCATCCAACACAACGGACACTCCGCCTCCACCACCACCATCCAACACAACTGACACTCCACC
ACCACCGCCGCCATCCAACACAACTGACACTCCGCCTCCACCGCCACCATCCAACACAACTGACACTCCGCCTCCACCGCCACCATCCAACACCACTGACACTCCGCCTC
CACCGCCACCATCCAACACAACTGACACTCCGCCTCCACCGCCACCATCCAACACCACTGACACTCCGCCTCCACCGCCACCATCCAACACAACTGACACTCCTCCGCCC
CCGCCACCATCCAACACTACTGACACTCCTCCACCGCCACCTAATTCCACCGTTATCTTACCATCCGCACCGCCACCTAATGTGGGTTCATCTCCACCACCGACGCCGAC
GACCAACGAAGCATTGA
mRNA sequenceShow/hide mRNA sequence
GAAAAAAAGGAAGACAAGAAAAAAAAGTACATTTAGATTTAAAAAATTACTAGAAAGCAACTATTTAATCGGTTGGTTCGACATAAAGTAGCAAAAGGCAGCCGGCTAAG
CAAAGCAAAATTTGATCTGCTCTGGCTATTAATAATCTTTGTTCGATAAAAGTAAAGTTATGAATGCTAATTTGTACATTTGTATGAACAATATATTGCACAAATATTAA
GAACCAAACAAGGCTTTACTCAAGAAAATATGCCAGGAAATTAAACATTGTTGTTAACGTTCAAACTTCCATAAGTTTTCTTCACCAAATAATCTTCAATTGCAAACAAA
CAAAACAAGACAACTATAAAATTAAAAGGCTTCTCACAATAATCTTCAATGTGAAAAGTGTATATATGCATATGTATGTTTGTGTATATGTGCACCTTAATCATACTTAA
GACTCATGGCTAAAAGGTTTACAATTTTTGTTTTTATTTTTATTTTTGTGTTTCTTCATGTCATAAATTTGACTTTGGCACAAGATGCATCTCCTCCACCACCATCCAAC
ACAACCGACACTCCGCCTCCGCCCCCGCCATCCAATCCCACCGAAACTCCGCCGCCGCCACCACCATCCAATACCACCGACACTCCGCCTCCGCCGCCGCCATCCAATAC
CACCGACACTCCGCCTCCACCGCCATCCAACACAACGGACACTCCGCCTCCACCACCACCATCCAACACAACTGACACTCCACCACCACCGCCGCCATCCAACACAACTG
ACACTCCGCCTCCACCGCCACCATCCAACACAACTGACACTCCGCCTCCACCGCCACCATCCAACACCACTGACACTCCGCCTCCACCGCCACCATCCAACACAACTGAC
ACTCCGCCTCCACCGCCACCATCCAACACCACTGACACTCCGCCTCCACCGCCACCATCCAACACAACTGACACTCCTCCGCCCCCGCCACCATCCAACACTACTGACAC
TCCTCCACCGCCACCTAATTCCACCGTTATCTTACCATCCGCACCGCCACCTAATGTGGGTTCATCTCCACCACCGACGCCGACGACCAACGAAGCATTGA
Protein sequenceShow/hide protein sequence
MHLLHHHPTQPTLRLRPRHPIPPKLRRRHHHPIPPTLRLRRRHPIPPTLRLHRHPTQRTLRLHHHHPTQLTLHHHRRHPTQLTLRLHRHHPTQLTLRLHRHHPTPLTLRL
HRHHPTQLTLRLHRHHPTPLTLRLHRHHPTQLTLLRPRHHPTLLTLLHRHLIPPLSYHPHRHLMWVHLHHRRRRPTKH