; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0028423 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028423
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionSWIM-type domain-containing protein
Genome locationchr11:12932746..12933351
RNA-Seq ExpressionPI0028423
SyntenyPI0028423
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062291.1 hypothetical protein E6C27_scaffold154G00320 [Cucumis melo var. makuwa]6.4e-4679.13Show/hide
Query:  MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQP
        MKSHLTSWAEN+L LE EKS+ LLVDPIS T+Y+V DGNQQFIVKLN+G CSCR+WD+EEIPC+HAL VLRMLNLDTYSYV +FYYRETLSATYN C QP
Subjt:  MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQP

Query:  VGTHLDWRVEDDVIK
        VG+H DWRV D V+K
Subjt:  VGTHLDWRVEDDVIK

TYK07957.1 hypothetical protein E5676_scaffold265G00780 [Cucumis melo var. makuwa]8.7e-5179.51Show/hide
Query:  VDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQPVGTHLDWRVEDDVIKTLPPIFKRQ
        VDPIS T+Y+V +GNQQFIVKLN+  CSCR+WDVEEIPC+HALVVLRMLNLDTYSYV EFYYRETLS TYN CIQPVG+H DWRV D V+K LPP+FKRQ
Subjt:  VDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQPVGTHLDWRVEDDVIKTLPPIFKRQ

Query:  AGRPRKQRIPFVGEFNSSSRCS
        AGRP KQRIP V EFNSS++CS
Subjt:  AGRPRKQRIPFVGEFNSSSRCS

XP_011654398.1 uncharacterized protein LOC105435382 [Cucumis sativus]5.1e-4359.18Show/hide
Query:  MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQP
        MK+ LTSWAE++L  +HE+S+S  V PI+  +Y VM G++Q IVKLNLGSCSCR+WD  EIPCSHALVVL MLNL++YSYV ++Y+ +TL +TY   + P
Subjt:  MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQP

Query:  VGTHLDWRVEDDVIKTLPPIFKRQAGRPRKQRIPFVGEFNSSS-RCS
        +G H +WR+ +D I  LPPIFKR  GRP+  R+P +GE NSSS RCS
Subjt:  VGTHLDWRVEDDVIKTLPPIFKRQAGRPRKQRIPFVGEFNSSS-RCS

XP_038896605.1 uncharacterized protein LOC120084863 [Benincasa hispida]5.4e-4559.46Show/hide
Query:  MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQP
        M + LT WAEN+L  +HE+S+S ++ PI   +Y VMDG++QF+VKLN  SCS ++WD EEIPCSH LVVLR+LN+D YSY+  +YY   LS TY  C++P
Subjt:  MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQP

Query:  VGTHLDWRVEDDVIKTLPPIFKRQAGRPRKQRIPFVGEFNSSS-RCSK
        VG H +WRV DD I+ LPPIFK  A RP+KQRIP VGE  SSS RCS+
Subjt:  VGTHLDWRVEDDVIKTLPPIFKRQAGRPRKQRIPFVGEFNSSS-RCSK

XP_038904248.1 uncharacterized protein LOC120090597 [Benincasa hispida]2.2e-4661.49Show/hide
Query:  MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQP
        M + LT WAEN+L  +HE+S+S +V PI   +Y VMDG++QF+VKLNLGSCSCR+WD EEI CSHALV+L +LN+D YSYV  +YY  TLS TY  C++P
Subjt:  MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQP

Query:  VGTHLDWRVEDDVIKTLPPIFKRQAGRPRKQRIPFVGEFNSSS-RCSK
        +G H +WRV DD I+ LPPIFKR AG P+KQRIP   E  SSS RCS+
Subjt:  VGTHLDWRVEDDVIKTLPPIFKRQAGRPRKQRIPFVGEFNSSS-RCSK

TrEMBL top hitse value%identityAlignment
A0A5A7V9D5 SWIM-type domain-containing protein3.1e-4679.13Show/hide
Query:  MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQP
        MKSHLTSWAEN+L LE EKS+ LLVDPIS T+Y+V DGNQQFIVKLN+G CSCR+WD+EEIPC+HAL VLRMLNLDTYSYV +FYYRETLSATYN C QP
Subjt:  MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQP

Query:  VGTHLDWRVEDDVIK
        VG+H DWRV D V+K
Subjt:  VGTHLDWRVEDDVIK

A0A5D3BD68 SWIM-type domain-containing protein1.3e-3950.34Show/hide
Query:  MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQP
        +KS L+SWAE ++    ++S+S +V+P+S  +++V+DG + F+VKLN  SCSC  WD+EEIPC+HAL+V+R LNL+ Y++V ++YY   LSATY   ++P
Subjt:  MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQP

Query:  VGTHLDWRVEDDVIKTLPPIFKRQAGRPRKQRIPFVGEFNSSSRCSK
        +G H DW V       LPP+F+R AGRPRK+RIP +GE + SS+CS+
Subjt:  VGTHLDWRVEDDVIKTLPPIFKRQAGRPRKQRIPFVGEFNSSSRCSK

A0A5D3BEQ2 SWIM-type domain-containing protein3.1e-3848.3Show/hide
Query:  MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQP
        +KS L+SWAE ++    ++S+S +V+P+S  +++V+DG + F+VKLN  SCSC  WD+EEI C+HAL+V+R LNL+ Y++V ++YY   LSATY   ++P
Subjt:  MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQP

Query:  VGTHLDWRVEDDVIKTLPPIFKRQAGRPRKQRIPFVGEFNSSSRCSK
        +G H DW V +     LPP+F+R AGRPRK++IP +G+ + SS+CS+
Subjt:  VGTHLDWRVEDDVIKTLPPIFKRQAGRPRKQRIPFVGEFNSSSRCSK

A0A5D3BVP4 SWIM-type domain-containing protein5.7e-4050.34Show/hide
Query:  MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQP
        +KS L+SWAE ++    ++S+S +V+P+S  +++V+DG + F+VKLN  SCSC  WD+EEIPC+HAL+V+R LNL+ Y++V ++YY   LSATY   ++P
Subjt:  MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQP

Query:  VGTHLDWRVEDDVIKTLPPIFKRQAGRPRKQRIPFVGEFNSSSRCSK
        +G H DW V +     LPP+F+R AGRPRK+RIP +GE + SS+CS+
Subjt:  VGTHLDWRVEDDVIKTLPPIFKRQAGRPRKQRIPFVGEFNSSSRCSK

A0A5D3C7L7 Uncharacterized protein4.2e-5179.51Show/hide
Query:  VDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQPVGTHLDWRVEDDVIKTLPPIFKRQ
        VDPIS T+Y+V +GNQQFIVKLN+  CSCR+WDVEEIPC+HALVVLRMLNLDTYSYV EFYYRETLS TYN CIQPVG+H DWRV D V+K LPP+FKRQ
Subjt:  VDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQPVGTHLDWRVEDDVIKTLPPIFKRQ

Query:  AGRPRKQRIPFVGEFNSSSRCS
        AGRP KQRIP V EFNSS++CS
Subjt:  AGRPRKQRIPFVGEFNSSSRCS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G64260.1 MuDR family transposase5.7e-0828.83Show/hide
Query:  EKSKSLLVDPISFT-------KYKVMDGN--QQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQPVGTHLDWR
        +K +  + D I +         +KV + +  +++IV+LN+ +C+CR +   + PC HAL V   L ++   YV E Y  E    TY     PV     W 
Subjt:  EKSKSLLVDPISFT-------KYKVMDGN--QQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQPVGTHLDWR

Query:  VEDDVIKTLPP
         +  V    PP
Subjt:  VEDDVIKTLPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGTCATTTGACTTCTTGGGCTGAGAACGTTTTGCCTTTAGAACATGAAAAGTCAAAAAGTTTATTGGTCGATCCAATTAGTTTCACTAAATACAAAGTAATGGA
TGGAAATCAACAGTTCATTGTCAAGTTAAACTTGGGATCTTGTAGCTGTCGACTATGGGATGTTGAGGAAATTCCATGTTCACATGCACTTGTTGTTCTACGAATGCTTA
ATTTAGATACGTATTCTTATGTATTTGAGTTTTATTATAGAGAAACACTATCAGCAACATACAATGATTGTATTCAACCTGTTGGGACTCATTTGGATTGGAGAGTTGAA
GATGATGTCATAAAAACATTACCTCCAATCTTTAAACGTCAAGCTGGAAGACCAAGAAAACAAAGAATTCCATTTGTAGGTGAATTTAATAGTTCATCAAGATGTTCCAA
AGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAGTCATTTGACTTCTTGGGCTGAGAACGTTTTGCCTTTAGAACATGAAAAGTCAAAAAGTTTATTGGTCGATCCAATTAGTTTCACTAAATACAAAGTAATGGA
TGGAAATCAACAGTTCATTGTCAAGTTAAACTTGGGATCTTGTAGCTGTCGACTATGGGATGTTGAGGAAATTCCATGTTCACATGCACTTGTTGTTCTACGAATGCTTA
ATTTAGATACGTATTCTTATGTATTTGAGTTTTATTATAGAGAAACACTATCAGCAACATACAATGATTGTATTCAACCTGTTGGGACTCATTTGGATTGGAGAGTTGAA
GATGATGTCATAAAAACATTACCTCCAATCTTTAAACGTCAAGCTGGAAGACCAAGAAAACAAAGAATTCCATTTGTAGGTGAATTTAATAGTTCATCAAGATGTTCCAA
AGTTTGA
Protein sequenceShow/hide protein sequence
MKSHLTSWAENVLPLEHEKSKSLLVDPISFTKYKVMDGNQQFIVKLNLGSCSCRLWDVEEIPCSHALVVLRMLNLDTYSYVFEFYYRETLSATYNDCIQPVGTHLDWRVE
DDVIKTLPPIFKRQAGRPRKQRIPFVGEFNSSSRCSKV