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PI0028466 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028466
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein
Genome locationchr03:15829315..15829617
RNA-Seq ExpressionPI0028466
SyntenyPI0028466
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MCH92231.1 hypothetical protein [Trifolium medium]2.3e-2466.67Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN
        D AKIDVI  LP+PTC++++RSFLG  GFYRRFIKDFSKIALPL++LLQKD+ F  DDKCK+AF+ LK+   STP++Q P+
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN

XP_021603241.1 uncharacterized protein LOC110608326 [Manihot esculenta]1.6e-2566.67Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN
        DKAK+DVI+ LPYPTC++D+RSFLG  GFYRRFIKDFS+IA PL  LLQKDVPF  D++C++AFN LK++  + PI+Q+PN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN

XP_028797073.1 LOW QUALITY PROTEIN: uncharacterized protein LOC114752508 [Prosopis alba]4.7e-2570.37Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN
        DKAKID+I  LPYP+C+KDVRSFLG  GFYRRFI+DFSKIALPL+ LLQKDV FV DD C+ A++ELK+R  + PI+Q PN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN

XP_028798815.1 LOW QUALITY PROTEIN: uncharacterized protein LOC114754213 [Prosopis alba]4.7e-2570.37Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN
        DKAKID+I  LPYP+C+KDVRSFLG  GFYRRFI+DFSKIALPL+ LLQKDV FV DD C+ A++ELK+R  + PI+Q PN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN

XP_028802716.1 uncharacterized protein LOC114757797 [Prosopis alba]3.6e-2570.37Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN
        DKAKID+I  LPYP+C+KDVRSFLG  GFYRRFI+DFSKIALPL+ LLQKDV FV DD C+ A++ELK+R  + PI+Q PN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN

TrEMBL top hitse value%identityAlignment
A0A151QL68 Transposon Ty3-G Gag-Pol polyprotein7.3e-2466.67Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN
        DKAKI+VI  LPYPTC+K++RSFLG  GFYRRFIKDFSKIA PL+ LLQKD  F  ++ C+ AF+ELK R  S PIL +PN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN

A0A2K3NDP5 RT_RNaseH_2 domain-containing protein (Fragment)7.3e-2467.9Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN
        D AKI+V   LPYP+C+ ++RSFLG  GFY RFIKDFSKIALPL++LLQKDV F  DDKCKKAF+ LK    STPI+Q PN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN

A0A2U1NRI2 Reverse transcriptase7.3e-2467.9Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN
        DKAK+DVI KLP PT +K +RSFLG  GFYRRFIKDFSKIA PLT LL+KD+PF  DD+C+KAF  LK++   TPI+ SPN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN

A0A392MXJ5 Uncharacterized protein (Fragment)1.1e-2466.67Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN
        D AKIDVI  LP+PTC++++RSFLG  GFYRRFIKDFSKIALPL++LLQKD+ F  DDKCK+AF+ LK+   STP++Q P+
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN

A0A699HVJ5 Reverse transcriptase domain-containing protein5.6e-2467.9Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN
        DKAKIDVI KLPYPT +K +RSFLG   FY RFIKDFSKIA PLT LL+KD PF  +D+C K FN LK++F  TPI+ SPN
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN

SwissProt top hitse value%identityAlignment
P03359 Gag-Pol polyprotein4.4e-1036.71Show/hide
Query:  AKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN
        A+   + K+P PT  + VR FLG+ GF R +I  F+ +A PL  L ++ +PF+  ++ +KAF+ +K+   S P L  P+
Subjt:  AKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN

P04323 Retrovirus-related Pol polyprotein from transposon 17.62.6e-1040.51Show/hide
Query:  KIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPF-VIDDKCKKAFNELKQRFFSTPILQSPN
        KI+ IQK P PT  K++++FLG  G+YR+FI +F+ IA P+T  L+K++     + +   AF +LK      PIL+ P+
Subjt:  KIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPF-VIDDKCKKAFNELKQRFFSTPILQSPN

P10394 Retrovirus-related Pol polyprotein from transposon 4124.0e-1140.74Show/hide
Query:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN
        D  K DVIQ  P P      R F+    +YRRFIK+F+  +  +T L +K+VPF   D+C+KAF  LK +  +  +LQ P+
Subjt:  DKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN

P21414 Gag-Pol polyprotein9.9e-1035.44Show/hide
Query:  AKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN
        A+   + K+P PT  + VR FLG+ GF R +I  F+ +A PL  L ++ +PF+  ++ ++AF+ +K+   S P L  P+
Subjt:  AKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus5.2e-1134.04Show/hide
Query:  VSHDKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQ-----------KDVPFVIDDKCKKAFNELKQRFFSTPILQSP
        +  D  K+  I ++P PT +K+++ FLG   +YR+FI+D++K+A PLT+L +             VP  +D+   ++FN+LK    S+ IL  P
Subjt:  VSHDKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQ-----------KDVPFVIDDKCKKAFNELKQRFFSTPILQSP

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein5.9e-1038.1Show/hide
Query:  VSHDKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN
        VS D AK++ +   P P    ++R FLG  G+YRRF+K++ KI  PLT LL+K+      +    AF  LK    + P+L  P+
Subjt:  VSHDKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATCACATGATAAAGCAAAGATTGATGTTATTCAAAAATTGCCATATCCTACTTGTCTAAAAGATGTTAGATCTTTCCTTGGTAGTGTCGGCTTTTATAGAAGGTT
TATAAAGGATTTTTCTAAAATTGCTTTACCTCTAACTTCTCTCTTGCAAAAAGATGTGCCATTTGTGATTGATGACAAATGTAAAAAGGCATTCAATGAACTCAAGCAAA
GGTTCTTCTCTACTCCTATCCTTCAATCTCCTAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTATCACATGATAAAGCAAAGATTGATGTTATTCAAAAATTGCCATATCCTACTTGTCTAAAAGATGTTAGATCTTTCCTTGGTAGTGTCGGCTTTTATAGAAGGTT
TATAAAGGATTTTTCTAAAATTGCTTTACCTCTAACTTCTCTCTTGCAAAAAGATGTGCCATTTGTGATTGATGACAAATGTAAAAAGGCATTCAATGAACTCAAGCAAA
GGTTCTTCTCTACTCCTATCCTTCAATCTCCTAATTAG
Protein sequenceShow/hide protein sequence
MVSHDKAKIDVIQKLPYPTCLKDVRSFLGSVGFYRRFIKDFSKIALPLTSLLQKDVPFVIDDKCKKAFNELKQRFFSTPILQSPN