; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0028480 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028480
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr05:17152558..17153883
RNA-Seq ExpressionPI0028480
SyntenyPI0028480
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049609.1 transposase [Cucumis melo var. makuwa]2.0e-2846.91Show/hide
Query:  KKVSFSTEAINDLYDLPNDAHT-PGQAFMVRPTKRQAHEALEVIVWLETKWKITPMRKYQLHPHQLTTDVNVGLFFTKKKIFPTRHDNSINLESVMLLYY
        +KV F+TE IN+LYDLPND    PGQ  +V   +  A + +++IVW E     TP R+ QL PHQLT + NV LFF KKKIFPT HD++I  E  ++LY 
Subjt:  KKVSFSTEAINDLYDLPNDAHT-PGQAFMVRPTKRQAHEALEVIVWLETKWKITPMRKYQLHPHQLTTDVNVGLFFTKKKIFPTRHDNSINLESVMLLYY

Query:  ILKWLKVNLGALINATILSWMESPKGVMPFPSTLEAL---YLQVIPLFTALPQIHILGELCN
        I      NLG ++N   LSWM +PK   PFP+T++ L   YL   P    +PQI ++G  CN
Subjt:  ILKWLKVNLGALINATILSWMESPKGVMPFPSTLEAL---YLQVIPLFTALPQIHILGELCN

KAA0053237.1 hypothetical protein E6C27_scaffold102G00220 [Cucumis melo var. makuwa]2.6e-2833.99Show/hide
Query:  LPAKFKALGGEKDDVKALAKTGTSRPEEPQPGDHAKTKEPSINTIIKIEKGLFLFNGPLLDFLYAPIQAFGWKNFFKGHTKLRGKKVSFSTEAINDLYDL
        +  K K +  E   +K   + G  RP+              I+ +IK+EKGLF FN  L +F+++ I+AFGW  FF G TK           A  +LYDL
Subjt:  LPAKFKALGGEKDDVKALAKTGTSRPEEPQPGDHAKTKEPSINTIIKIEKGLFLFNGPLLDFLYAPIQAFGWKNFFKGHTKLRGKKVSFSTEAINDLYDL

Query:  PNDAHTPGQAFMVRPTKRQAHEALEVIVWLETKWKITPMRKYQLHPHQLTTDVNVGLFFTKKKIFPTRHDNSINLESVMLLYYILKWLKVNLGALINATI
         NDA+ P    + +PTK  A E L                 YQL  H++         +  +KI                       +  NLGA+I   I
Subjt:  PNDAHTPGQAFMVRPTKRQAHEALEVIVWLETKWKITPMRKYQLHPHQLTTDVNVGLFFTKKKIFPTRHDNSINLESVMLLYYILKWLKVNLGALINATI

Query:  LSWMESPKGVMPFPSTLEALYLQVIPLFTALPQIHILGELCNQASLNRMITLHTHKEMEMCLKTFGNEEEDEG---EAQVELLKRKTSAFASTPKPPAKK
         +WME PKG   FPS +E LYL+ IP    LPQ  I   + NQ +LNR+IT H +KE E  LKT G+E+E EG   +  + L        AST     KK
Subjt:  LSWMESPKGVMPFPSTLEALYLQVIPLFTALPQIHILGELCNQASLNRMITLHTHKEMEMCLKTFGNEEEDEG---EAQVELLKRKTSAFASTPKPPAKK

Query:  PKVDAS
         KVDA+
Subjt:  PKVDAS

KAA0062900.1 gag/pol protein [Cucumis melo var. makuwa]2.2e-2744.23Show/hide
Query:  LRGKKVSFSTEAINDLYDLPNDAHTPGQAFMVRPTKRQAHEALEVIVWLETKWKITPMR-KYQLHPHQLTTDVNVGLFFTKKKIFPTRHDNSINLESVML
        +  +K  F+ E IN+LY+ PNDA   GQ  + + TK  A EAL+V+ W     ++ PM+ +YQL+PH LTT  NV +FFTK KIFPT +D++I+++  ++
Subjt:  LRGKKVSFSTEAINDLYDLPNDAHTPGQAFMVRPTKRQAHEALEVIVWLETKWKITPMR-KYQLHPHQLTTDVNVGLFFTKKKIFPTRHDNSINLESVML

Query:  LYYILKWLKVNLGALINATILSWMESPKGVMPFPSTLEALYLQVIPLFTALPQIHI
        LY I+    +NL  +I A IL+WME PK  MPFPS +E L L+ +P     P+ +I
Subjt:  LYYILKWLKVNLGALINATILSWMESPKGVMPFPSTLEALYLQVIPLFTALPQIHI

TYJ97633.1 hypothetical protein E5676_scaffold469G00170 [Cucumis melo var. makuwa]2.4e-2935.15Show/hide
Query:  VKALAKTGTSRPEEPQPGDHAKTKEP-SINTIIKIEKGLFLFNGPLLDFLYAPIQAFGWKNFFKGHTKLRGKKVSFSTEAINDLYDLPNDAHTPGQAFMV
        ++  AK     P + +       K P  I+ +IK+EKGLF FN  L +F+++ I+AFGW  FF G TK           A  +LYDL NDA+ P    + 
Subjt:  VKALAKTGTSRPEEPQPGDHAKTKEP-SINTIIKIEKGLFLFNGPLLDFLYAPIQAFGWKNFFKGHTKLRGKKVSFSTEAINDLYDLPNDAHTPGQAFMV

Query:  RPTKRQAHEALEVIVWLETKWKITPMRKYQLHPHQLTTDVNVGLFFTKKKIFPTRHDNSINLESVMLLYYILKWLKVNLGALINATILSWMESPKGVMPF
        +PTKR A E L                 YQL  H++         +  +KI                       +  NLGA+I   IL+WME PKG   F
Subjt:  RPTKRQAHEALEVIVWLETKWKITPMRKYQLHPHQLTTDVNVGLFFTKKKIFPTRHDNSINLESVMLLYYILKWLKVNLGALINATILSWMESPKGVMPF

Query:  PSTLEALYLQVIPLFTALPQIHILGELCNQASLNRMITLHTHKEMEMCLKTFGNEEEDEG---EAQVELLKRKTSAFASTPKPPAKKPKVDAS
        PS +E LYL+ IP    LPQ  I   + NQ +LNR+IT H +KE E  LKT G+E+E +G   +  + L        AST     KK KVDA+
Subjt:  PSTLEALYLQVIPLFTALPQIHILGELCNQASLNRMITLHTHKEMEMCLKTFGNEEEDEG---EAQVELLKRKTSAFASTPKPPAKKPKVDAS

TYK15967.1 hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa]2.0e-2846.91Show/hide
Query:  KKVSFSTEAINDLYDLPNDAHT-PGQAFMVRPTKRQAHEALEVIVWLETKWKITPMRKYQLHPHQLTTDVNVGLFFTKKKIFPTRHDNSINLESVMLLYY
        +KV F+TE IN+LYDLPND    PGQ  +V   +  A + +++IVW E     TP R+ QL PHQLT + NV LFF KKKIFPT HD++I  E  ++LY 
Subjt:  KKVSFSTEAINDLYDLPNDAHT-PGQAFMVRPTKRQAHEALEVIVWLETKWKITPMRKYQLHPHQLTTDVNVGLFFTKKKIFPTRHDNSINLESVMLLYY

Query:  ILKWLKVNLGALINATILSWMESPKGVMPFPSTLEAL---YLQVIPLFTALPQIHILGELCN
        I      NLG ++N   LSWM +PK   PFP+T++ L   YL   P    +PQI ++G  CN
Subjt:  ILKWLKVNLGALINATILSWMESPKGVMPFPSTLEAL---YLQVIPLFTALPQIHILGELCN

TrEMBL top hitse value%identityAlignment
A0A5A7U806 Transposase9.8e-2946.91Show/hide
Query:  KKVSFSTEAINDLYDLPNDAHT-PGQAFMVRPTKRQAHEALEVIVWLETKWKITPMRKYQLHPHQLTTDVNVGLFFTKKKIFPTRHDNSINLESVMLLYY
        +KV F+TE IN+LYDLPND    PGQ  +V   +  A + +++IVW E     TP R+ QL PHQLT + NV LFF KKKIFPT HD++I  E  ++LY 
Subjt:  KKVSFSTEAINDLYDLPNDAHT-PGQAFMVRPTKRQAHEALEVIVWLETKWKITPMRKYQLHPHQLTTDVNVGLFFTKKKIFPTRHDNSINLESVMLLYY

Query:  ILKWLKVNLGALINATILSWMESPKGVMPFPSTLEAL---YLQVIPLFTALPQIHILGELCN
        I      NLG ++N   LSWM +PK   PFP+T++ L   YL   P    +PQI ++G  CN
Subjt:  ILKWLKVNLGALINATILSWMESPKGVMPFPSTLEAL---YLQVIPLFTALPQIHILGELCN

A0A5A7UFG4 Uncharacterized protein1.3e-2833.99Show/hide
Query:  LPAKFKALGGEKDDVKALAKTGTSRPEEPQPGDHAKTKEPSINTIIKIEKGLFLFNGPLLDFLYAPIQAFGWKNFFKGHTKLRGKKVSFSTEAINDLYDL
        +  K K +  E   +K   + G  RP+              I+ +IK+EKGLF FN  L +F+++ I+AFGW  FF G TK           A  +LYDL
Subjt:  LPAKFKALGGEKDDVKALAKTGTSRPEEPQPGDHAKTKEPSINTIIKIEKGLFLFNGPLLDFLYAPIQAFGWKNFFKGHTKLRGKKVSFSTEAINDLYDL

Query:  PNDAHTPGQAFMVRPTKRQAHEALEVIVWLETKWKITPMRKYQLHPHQLTTDVNVGLFFTKKKIFPTRHDNSINLESVMLLYYILKWLKVNLGALINATI
         NDA+ P    + +PTK  A E L                 YQL  H++         +  +KI                       +  NLGA+I   I
Subjt:  PNDAHTPGQAFMVRPTKRQAHEALEVIVWLETKWKITPMRKYQLHPHQLTTDVNVGLFFTKKKIFPTRHDNSINLESVMLLYYILKWLKVNLGALINATI

Query:  LSWMESPKGVMPFPSTLEALYLQVIPLFTALPQIHILGELCNQASLNRMITLHTHKEMEMCLKTFGNEEEDEG---EAQVELLKRKTSAFASTPKPPAKK
         +WME PKG   FPS +E LYL+ IP    LPQ  I   + NQ +LNR+IT H +KE E  LKT G+E+E EG   +  + L        AST     KK
Subjt:  LSWMESPKGVMPFPSTLEALYLQVIPLFTALPQIHILGELCNQASLNRMITLHTHKEMEMCLKTFGNEEEDEG---EAQVELLKRKTSAFASTPKPPAKK

Query:  PKVDAS
         KVDA+
Subjt:  PKVDAS

A0A5A7V6M5 Gag/pol protein1.1e-2744.23Show/hide
Query:  LRGKKVSFSTEAINDLYDLPNDAHTPGQAFMVRPTKRQAHEALEVIVWLETKWKITPMR-KYQLHPHQLTTDVNVGLFFTKKKIFPTRHDNSINLESVML
        +  +K  F+ E IN+LY+ PNDA   GQ  + + TK  A EAL+V+ W     ++ PM+ +YQL+PH LTT  NV +FFTK KIFPT +D++I+++  ++
Subjt:  LRGKKVSFSTEAINDLYDLPNDAHTPGQAFMVRPTKRQAHEALEVIVWLETKWKITPMR-KYQLHPHQLTTDVNVGLFFTKKKIFPTRHDNSINLESVML

Query:  LYYILKWLKVNLGALINATILSWMESPKGVMPFPSTLEALYLQVIPLFTALPQIHI
        LY I+    +NL  +I A IL+WME PK  MPFPS +E L L+ +P     P+ +I
Subjt:  LYYILKWLKVNLGALINATILSWMESPKGVMPFPSTLEALYLQVIPLFTALPQIHI

A0A5D3BEA4 Uncharacterized protein1.2e-2935.15Show/hide
Query:  VKALAKTGTSRPEEPQPGDHAKTKEP-SINTIIKIEKGLFLFNGPLLDFLYAPIQAFGWKNFFKGHTKLRGKKVSFSTEAINDLYDLPNDAHTPGQAFMV
        ++  AK     P + +       K P  I+ +IK+EKGLF FN  L +F+++ I+AFGW  FF G TK           A  +LYDL NDA+ P    + 
Subjt:  VKALAKTGTSRPEEPQPGDHAKTKEP-SINTIIKIEKGLFLFNGPLLDFLYAPIQAFGWKNFFKGHTKLRGKKVSFSTEAINDLYDLPNDAHTPGQAFMV

Query:  RPTKRQAHEALEVIVWLETKWKITPMRKYQLHPHQLTTDVNVGLFFTKKKIFPTRHDNSINLESVMLLYYILKWLKVNLGALINATILSWMESPKGVMPF
        +PTKR A E L                 YQL  H++         +  +KI                       +  NLGA+I   IL+WME PKG   F
Subjt:  RPTKRQAHEALEVIVWLETKWKITPMRKYQLHPHQLTTDVNVGLFFTKKKIFPTRHDNSINLESVMLLYYILKWLKVNLGALINATILSWMESPKGVMPF

Query:  PSTLEALYLQVIPLFTALPQIHILGELCNQASLNRMITLHTHKEMEMCLKTFGNEEEDEG---EAQVELLKRKTSAFASTPKPPAKKPKVDAS
        PS +E LYL+ IP    LPQ  I   + NQ +LNR+IT H +KE E  LKT G+E+E +G   +  + L        AST     KK KVDA+
Subjt:  PSTLEALYLQVIPLFTALPQIHILGELCNQASLNRMITLHTHKEMEMCLKTFGNEEEDEG---EAQVELLKRKTSAFASTPKPPAKKPKVDAS

A0A5D3CVL7 Uncharacterized protein9.8e-2946.91Show/hide
Query:  KKVSFSTEAINDLYDLPNDAHT-PGQAFMVRPTKRQAHEALEVIVWLETKWKITPMRKYQLHPHQLTTDVNVGLFFTKKKIFPTRHDNSINLESVMLLYY
        +KV F+TE IN+LYDLPND    PGQ  +V   +  A + +++IVW E     TP R+ QL PHQLT + NV LFF KKKIFPT HD++I  E  ++LY 
Subjt:  KKVSFSTEAINDLYDLPNDAHT-PGQAFMVRPTKRQAHEALEVIVWLETKWKITPMRKYQLHPHQLTTDVNVGLFFTKKKIFPTRHDNSINLESVMLLYY

Query:  ILKWLKVNLGALINATILSWMESPKGVMPFPSTLEAL---YLQVIPLFTALPQIHILGELCN
        I      NLG ++N   LSWM +PK   PFP+T++ L   YL   P    +PQI ++G  CN
Subjt:  ILKWLKVNLGALINATILSWMESPKGVMPFPSTLEAL---YLQVIPLFTALPQIHILGELCN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCTCCCAGCAAAATTCAAGGCGTTGGGAGGAGAGAAAGATGATGTCAAAGCCTTGGCCAAAACTGGGACATCTAGACCTGAGGAGCCCCAACCCGGCGACCATGC
GAAGACGAAAGAGCCCTCCATTAACACTATCATCAAGATTGAAAAGGGGCTCTTTCTCTTCAATGGACCCCTACTTGATTTCCTCTACGCACCAATCCAGGCGTTTGGAT
GGAAAAATTTCTTCAAAGGGCACACCAAATTAAGGGGTAAAAAGGTGAGCTTCAGCACCGAGGCCATCAACGACCTTTACGACCTGCCCAATGACGCGCACACACCAGGG
CAAGCGTTTATGGTCAGACCAACGAAAAGGCAGGCACATGAAGCATTAGAAGTGATCGTCTGGCTTGAGACCAAATGGAAGATAACGCCTATGAGGAAATATCAGTTACA
TCCACACCAACTTACTACTGACGTAAACGTGGGGCTATTCTTTACCAAGAAAAAGATATTTCCTACGCGCCATGACAATTCCATCAATTTGGAGTCTGTCATGCTCCTCT
ACTACATCCTTAAATGGTTGAAGGTCAACCTAGGCGCGCTGATCAACGCCACCATCCTTTCTTGGATGGAATCTCCCAAGGGCGTCATGCCCTTCCCTTCTACTCTCGAG
GCTCTCTACCTGCAAGTCATCCCTTTATTTACTGCCCTCCCCCAAATCCACATTTTGGGTGAGCTTTGCAACCAAGCATCTTTAAATCGAATGATCACTCTCCATACACA
CAAGGAAATGGAAATGTGTTTAAAGACGTTTGGCAACGAAGAAGAAGACGAAGGCGAGGCTCAAGTAGAGCTCTTGAAGAGAAAAACCTCAGCTTTTGCATCAACCCCCA
AACCACCTGCCAAAAAGCCTAAGGTTGATGCAAGTGCAACACTCAAACCCTTCAAGATCATTCACCCCTCATCGTGCCCTAATAAACAAGCTTCCACAAAAGTAATTCCA
CTCGTCCTCCCTCAGACGGACCCTGTAACACGTTCCCCCCAGTTCTCATTATTTCTGAAGGGGACGCGAACCAAAACAATGCGGCATCCAGCCATCCGCCGTCAAAGAAG
GATATCAGAGGCCCTGTTGATGGTCCACTCGCAAAGAGAAAAGTACATGTCCTTGACGAAGCTGGCAAGACCGCCTCCTCGATGTCTACTCACAATGTTCCTAATAGAAC
ATGATACATGCGCAGCGGAAAAAATAGATCGATTTTACCCTAATTATAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCTCCCAGCAAAATTCAAGGCGTTGGGAGGAGAGAAAGATGATGTCAAAGCCTTGGCCAAAACTGGGACATCTAGACCTGAGGAGCCCCAACCCGGCGACCATGC
GAAGACGAAAGAGCCCTCCATTAACACTATCATCAAGATTGAAAAGGGGCTCTTTCTCTTCAATGGACCCCTACTTGATTTCCTCTACGCACCAATCCAGGCGTTTGGAT
GGAAAAATTTCTTCAAAGGGCACACCAAATTAAGGGGTAAAAAGGTGAGCTTCAGCACCGAGGCCATCAACGACCTTTACGACCTGCCCAATGACGCGCACACACCAGGG
CAAGCGTTTATGGTCAGACCAACGAAAAGGCAGGCACATGAAGCATTAGAAGTGATCGTCTGGCTTGAGACCAAATGGAAGATAACGCCTATGAGGAAATATCAGTTACA
TCCACACCAACTTACTACTGACGTAAACGTGGGGCTATTCTTTACCAAGAAAAAGATATTTCCTACGCGCCATGACAATTCCATCAATTTGGAGTCTGTCATGCTCCTCT
ACTACATCCTTAAATGGTTGAAGGTCAACCTAGGCGCGCTGATCAACGCCACCATCCTTTCTTGGATGGAATCTCCCAAGGGCGTCATGCCCTTCCCTTCTACTCTCGAG
GCTCTCTACCTGCAAGTCATCCCTTTATTTACTGCCCTCCCCCAAATCCACATTTTGGGTGAGCTTTGCAACCAAGCATCTTTAAATCGAATGATCACTCTCCATACACA
CAAGGAAATGGAAATGTGTTTAAAGACGTTTGGCAACGAAGAAGAAGACGAAGGCGAGGCTCAAGTAGAGCTCTTGAAGAGAAAAACCTCAGCTTTTGCATCAACCCCCA
AACCACCTGCCAAAAAGCCTAAGGTTGATGCAAGTGCAACACTCAAACCCTTCAAGATCATTCACCCCTCATCGTGCCCTAATAAACAAGCTTCCACAAAAGTAATTCCA
CTCGTCCTCCCTCAGACGGACCCTGTAACACGTTCCCCCCAGTTCTCATTATTTCTGAAGGGGACGCGAACCAAAACAATGCGGCATCCAGCCATCCGCCGTCAAAGAAG
GATATCAGAGGCCCTGTTGATGGTCCACTCGCAAAGAGAAAAGTACATGTCCTTGACGAAGCTGGCAAGACCGCCTCCTCGATGTCTACTCACAATGTTCCTAATAGAAC
ATGATACATGCGCAGCGGAAAAAATAGATCGATTTTACCCTAATTATAACTAA
Protein sequenceShow/hide protein sequence
MELPAKFKALGGEKDDVKALAKTGTSRPEEPQPGDHAKTKEPSINTIIKIEKGLFLFNGPLLDFLYAPIQAFGWKNFFKGHTKLRGKKVSFSTEAINDLYDLPNDAHTPG
QAFMVRPTKRQAHEALEVIVWLETKWKITPMRKYQLHPHQLTTDVNVGLFFTKKKIFPTRHDNSINLESVMLLYYILKWLKVNLGALINATILSWMESPKGVMPFPSTLE
ALYLQVIPLFTALPQIHILGELCNQASLNRMITLHTHKEMEMCLKTFGNEEEDEGEAQVELLKRKTSAFASTPKPPAKKPKVDASATLKPFKIIHPSSCPNKQASTKVIP
LVLPQTDPVTRSPQFSLFLKGTRTKTMRHPAIRRQRRISEALLMVHSQREKYMSLTKLARPPPRCLLTMFLIEHDTCAAEKIDRFYPNYN