CuGenDBv2

Gene ID	PI0028495
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Chlorophyll A-B binding protein
Genome location	chr05:5373614..5384638
RNA-Seq Expression	PI0028495
Synteny	PI0028495
Gene Ontology terms	GO:0009507 - chloroplast (cellular component) GO:0009579 - thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR023329 - Chlorophyll a/b binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0055599.1 uncharacterized protein E6C27_scaffold222G00820 [Cucumis melo var. makuwa]

1.6e-61

91.24

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Query:  MAAASTALILPINGANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRISNVSPGRDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKR
        MAAAS +LILPING NLPPSQYLSFRH+HPSAT SRLGWSRD+D GRSTHRTRGQAFRISNVSP +DGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKR
Subjt:  MAAASTALILPINGANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRISNVSPGRDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKR

Query:  RRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADY
        RRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQ+  Y
Subjt:  RRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADY

XP_008451793.1 PREDICTED: uncharacterized protein LOC103492970 isoform X1 [Cucumis melo]

2.0e-80

92.86

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Query:  MWASEIYKWISIHTRKRCTLGMAAASTALILPINGANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRISNVSPGRDGLIKQVIMVDPL
        MWASEIYKWISIH RK CTL MAAAS +LILPING NLPPSQYLSFRH+HPSAT SRLGWSRD+D GRSTHRTRGQAFRISNVSP +DGLIKQVIMVDPL
Subjt:  MWASEIYKWISIHTRKRCTLGMAAASTALILPINGANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRISNVSPGRDGLIKQVIMVDPL

Query:  EAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFIR
        EAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFIR
Subjt:  EAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFIR

XP_011648927.1 uncharacterized protein LOC101212671 [Cucumis sativus]

1.2e-77

92.86

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Query:  MWASEIYKWISIHTRKRCTLGMAAASTALILPINGANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRISNVSPGRDGLIKQVIMVDPL
        MWAS+IYKWISIH  +RCTL MAAASTALILPING NLPPSQYLSFRHT PSAT SRLGWS  RDAGRST RTRGQAFRISNVSPGRDGLIKQVIMVDPL
Subjt:  MWASEIYKWISIHTRKRCTLGMAAASTALILPINGANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRISNVSPGRDGLIKQVIMVDPL

Query:  EAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFIR
        EAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEG+TGKGILAQLADYFSILINFFIR
Subjt:  EAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFIR

XP_016902490.1 PREDICTED: uncharacterized protein LOC103492970 isoform X2 [Cucumis melo]

2.0e-72

87.5

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Query:  MWASEIYKWISIHTRKRCTLGMAAASTALILPINGANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRISNVSPGRDGLIKQVIMVDPL
        MWASEIYKWISIH RK CTL MAAAS +LILPING NLPPSQYLSFRH+HPSAT SRLGWSRD+D GRSTHRTRGQAFRISN           VIMVDPL
Subjt:  MWASEIYKWISIHTRKRCTLGMAAASTALILPINGANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRISNVSPGRDGLIKQVIMVDPL

Query:  EAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFIR
        EAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFIR
Subjt:  EAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFIR

XP_038889814.1 uncharacterized protein LOC120079625 [Benincasa hispida]

1.9e-62

88.81

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Query:  ASTALILPINGANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRISNVSPGRDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQ
        AST+LILPI G NLPPSQYLSFRHTHPSAT SR GWSRD+D GRSTHRTRGQAF+ISNVSPG+D LIKQVIMVDPLEAKR+AAKEMEKIKAKEKFKR+RQ
Subjt:  ASTALILPINGANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRISNVSPGRDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQ

Query:  IEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFI
        IEAINGAWAMIGLTAGLVIEGQTGKGILAQL  YFS +INFFI
Subjt:  IEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LH95 Uncharacterized protein

6.0e-78

92.86

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Query:  MWASEIYKWISIHTRKRCTLGMAAASTALILPINGANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRISNVSPGRDGLIKQVIMVDPL
        MWAS+IYKWISIH  +RCTL MAAASTALILPING NLPPSQYLSFRHT PSAT SRLGWS  RDAGRST RTRGQAFRISNVSPGRDGLIKQVIMVDPL
Subjt:  MWASEIYKWISIHTRKRCTLGMAAASTALILPINGANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRISNVSPGRDGLIKQVIMVDPL

Query:  EAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFIR
        EAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEG+TGKGILAQLADYFSILINFFIR
Subjt:  EAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFIR

A0A1S3BSE0 uncharacterized protein LOC103492970 isoform X1

9.8e-81

92.86

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Query:  MWASEIYKWISIHTRKRCTLGMAAASTALILPINGANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRISNVSPGRDGLIKQVIMVDPL
        MWASEIYKWISIH RK CTL MAAAS +LILPING NLPPSQYLSFRH+HPSAT SRLGWSRD+D GRSTHRTRGQAFRISNVSP +DGLIKQVIMVDPL
Subjt:  MWASEIYKWISIHTRKRCTLGMAAASTALILPINGANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRISNVSPGRDGLIKQVIMVDPL

Query:  EAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFIR
        EAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFIR
Subjt:  EAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFIR

A0A1S4E3D1 uncharacterized protein LOC103492970 isoform X2

9.9e-73

87.5

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Query:  MWASEIYKWISIHTRKRCTLGMAAASTALILPINGANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRISNVSPGRDGLIKQVIMVDPL
        MWASEIYKWISIH RK CTL MAAAS +LILPING NLPPSQYLSFRH+HPSAT SRLGWSRD+D GRSTHRTRGQAFRISN           VIMVDPL
Subjt:  MWASEIYKWISIHTRKRCTLGMAAASTALILPINGANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRISNVSPGRDGLIKQVIMVDPL

Query:  EAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFIR
        EAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFIR
Subjt:  EAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFIR

A0A5A7UQ54 Uncharacterized protein

7.8e-62

91.24

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Query:  MAAASTALILPINGANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRISNVSPGRDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKR
        MAAAS +LILPING NLPPSQYLSFRH+HPSAT SRLGWSRD+D GRSTHRTRGQAFRISNVSP +DGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKR
Subjt:  MAAASTALILPINGANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRISNVSPGRDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKR

Query:  RRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADY
        RRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQ+  Y
Subjt:  RRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADY

A0A6J1I0N1 uncharacterized protein LOC111468645 isoform X1

1.7e-56

80.95

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Query:  ASTALILPINGANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRI---SNVSPGRDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKR
        ASTALILPI+G N   SQ LSFRHTH SAT SR GWSRDRD G STHRTRGQAFRI    NVSPG+D LIK+VIMVDPLEAKR+AAKEMEKIKAKEKFKR
Subjt:  ASTALILPINGANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRI---SNVSPGRDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKR

Query:  RRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFIR
        RRQIEAINGAWAMIGLTAGL++EGQTGKGILAQLA Y + ++NFF+R
Subjt:  RRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFIR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G28025.1 unknown protein

1.2e-25

55.12

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Query:  RHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRI---SNVS----PGRDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTA
        R   PS++L + G  R +DA    +R R    R+    NVS    PG+  + K+VIMVDPLEAKR+A+K+ME+IK +EK +RRR+IEAINGAWA+IGL  
Subjt:  RHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRI---SNVS----PGRDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTA

Query:  GLVIEGQTGKGILAQLADYFSILINFF
        GLVIE QTGKGILAQLA Y+S +++ F
Subjt:  GLVIEGQTGKGILAQLADYFSILINFF

AT4G28025.2 unknown protein.

1.4e-26

51.45

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Query:  ANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRI---SNVS----PGRDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAI
        ++ PP  +L       S++  R G  R +DA    +R R    R+    NVS    PG+  + K+VIMVDPLEAKR+A+K+ME+IK +EK +RRR+IEAI
Subjt:  ANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRI---SNVS----PGRDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAI

Query:  NGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFF
        NGAWA+IGL  GLVIE QTGKGILAQLA Y+S +++ F
Subjt:  NGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFF

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTGGGCATCTGAAATCTATAAATGGATAAGCATTCATACAAGAAAGCGTTGCACTTTGGGAATGGCTGCTGCTTCCACTGCGCTGATTCTCCCCATCAATGGAGCAAA
CCTTCCGCCTTCCCAATACCTCTCTTTCCGCCATACTCACCCTTCTGCTACTTTATCCAGGTTGGGTTGGAGTAGGGACCGTGATGCTGGCAGAAGTACTCACAGAACGA
GGGGTCAAGCATTTCGAATCTCTAATGTCTCGCCTGGTAGAGATGGCTTAATCAAGCAGGTGATTATGGTTGACCCTTTGGAAGCCAAACGTATGGCGGCAAAAGAAATG
GAAAAGATCAAAGCAAAAGAGAAGTTCAAGAGAAGACGTCAAATAGAAGCGATTAATGGAGCATGGGCAATGATCGGTCTGACGGCAGGGCTTGTCATTGAAGGTCAAAC
CGGAAAAGGAATTCTAGCACAGTTGGCGGACTACTTCAGCATCCTTATCAACTTCTTCATACGGTAG

mRNA sequence

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GTCTAGGGCAAAGCCGAATTTAGACTCAACCAATTCAATTTCATTTCATTCCAATATTGTGTAGACAAGCAATATCAGATATATCCGATTGGTTGGATTAGAACGAGCTC
TGTACAGCCAGCAATGAGTGTCATTGCACGAATGTCGTTCTCTAGAAGATAAAGTGTTGATGTGGGCATCTGAAATCTATAAATGGATAAGCATTCATACAAGAAAGCGT
TGCACTTTGGGAATGGCTGCTGCTTCCACTGCGCTGATTCTCCCCATCAATGGAGCAAACCTTCCGCCTTCCCAATACCTCTCTTTCCGCCATACTCACCCTTCTGCTAC
TTTATCCAGGTTGGGTTGGAGTAGGGACCGTGATGCTGGCAGAAGTACTCACAGAACGAGGGGTCAAGCATTTCGAATCTCTAATGTCTCGCCTGGTAGAGATGGCTTAA
TCAAGCAGGTGATTATGGTTGACCCTTTGGAAGCCAAACGTATGGCGGCAAAAGAAATGGAAAAGATCAAAGCAAAAGAGAAGTTCAAGAGAAGACGTCAAATAGAAGCG
ATTAATGGAGCATGGGCAATGATCGGTCTGACGGCAGGGCTTGTCATTGAAGGTCAAACCGGAAAAGGAATTCTAGCACAGTTGGCGGACTACTTCAGCATCCTTATCAA
CTTCTTCATACGGTAGAGACATCTTCGAGGGGAAAAGGAGAAACCTTTGAATGAAAGAGTTCAATTAGAAACCAAGTTTCTCTCGGGCGAATGAGGGGATGAGTCACATT
GTTCAAGTGTCAGATTCAACATTTAAGAGAATTACTTATCTACTTACCATGTACATGAATTATACATAAAGGAGTGAGTCTCATCTATTGAACTTATGTTTTCATCTTCT
TATTCCATCAAGTTTCCAAAATGATAGATACATTGAGTTGGTGGCTTAGACATTCTCATCCATACAAGTTATAGGACTATATTTCAGTCTTAAGTTCATAACTCACTTGG
GAGGAATTCCTCATCTACTTACAATATGCAGTAAGGAAAGTAATGAATTCCATTTTGGGAAATTACATTCCTACCTTCTTATTTGATCAAGTCCCAAAATGGTAGATGGT
GATCTAGACCACTCTCTTATCCATGCAAATCAAAGGACCATTTCTCATTAGGCCATATTATTAGCTTATATTATTAATGTCTTCAATTGACGGAGTAGAGTTATAAAAAG
ATAAATTATTTCAAA

Protein sequence

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MWASEIYKWISIHTRKRCTLGMAAASTALILPINGANLPPSQYLSFRHTHPSATLSRLGWSRDRDAGRSTHRTRGQAFRISNVSPGRDGLIKQVIMVDPLEAKRMAAKEM
EKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFIR

PI0028495 (gene) of Melon (PI 482460) v1 genome