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PI0028505 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028505
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr04:20012696..20013241
RNA-Seq ExpressionPI0028505
SyntenyPI0028505
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043275.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-5163.54Show/hide
Query:  MIHLEGRSPTTGSLIQFGSLEPTVIYSSLEALQNNDIRFVYSKEEEKQVEDADEGWIVVTRRKKHKQKFSQKESRSYREYKRKGKSQRRKARKNARKFRP
        +I L+ R P  GSLIQFGSLEP VIY S EALQNND + + SKEEEKQ++DADEGW +VTRRKK KQ FSQKESRSYREY+R GKSQRRKARKN RK  P
Subjt:  MIHLEGRSPTTGSLIQFGSLEPTVIYSSLEALQNNDIRFVYSKEEEKQVEDADEGWIVVTRRKKHKQKFSQKESRSYREYKRKGKSQRRKARKNARKFRP

Query:  ITEEGEELPRPRQPITLKDFSPEKFPLEIVSCHVVNTTEDDASPSDPIEAKTKLEELPSMCINDFVIPTRNQRYNYRDIKK
        I EE EELPR RQPITLKDF  E F +EIV CH + TT+DD  PS+ IE   K E+L S+ IND +  ++  +    +I K
Subjt:  ITEEGEELPRPRQPITLKDFSPEKFPLEIVSCHVVNTTEDDASPSDPIEAKTKLEELPSMCINDFVIPTRNQRYNYRDIKK

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]1.9e-4458.56Show/hide
Query:  MIHLEGRSPTTGSLIQFGSLEPTVIYSSLEALQNNDIRFVYSKEEEKQVEDADEGWIVVTRRKKHKQKFSQKESRSYREYKRKGKSQRRKARKNARKFRP
        +I  + R    GSLIQFGSLEP VIYSS E LQNND R    KEEEKQV++ +EGW +VTRRKK KQ FSQKES +YR Y+ KGKSQRR  RKN RKF P
Subjt:  MIHLEGRSPTTGSLIQFGSLEPTVIYSSLEALQNNDIRFVYSKEEEKQVEDADEGWIVVTRRKKHKQKFSQKESRSYREYKRKGKSQRRKARKNARKFRP

Query:  ITEEGEELPRPRQPITLKDFSPEKFPLEIVSCHVVNTTEDDASPSDPIEAKTKLEELPSMCINDFVIPTRNQRYNYRDIKK
        I EE E L RPR+PI LKDF P+ FP+EIVSCH  +TTE+DA PS+ +E   K E+L  + IND +  +R  +    +I K
Subjt:  ITEEGEELPRPRQPITLKDFSPEKFPLEIVSCHVVNTTEDDASPSDPIEAKTKLEELPSMCINDFVIPTRNQRYNYRDIKK

KAA0065377.1 uncharacterized protein E6C27_scaffold17G00390 [Cucumis melo var. makuwa]1.1e-4458.56Show/hide
Query:  MIHLEGRSPTTGSLIQFGSLEPTVIYSSLEALQNNDIRFVYSKEEEKQVEDADEGWIVVTRRKKHKQKFSQKESRSYREYKRKGKSQRRKARKNARKFRP
        +I  + R    GSLIQFGSLEP VIYSSLE LQNND R    KEEEKQV++ +EGW +VT RKK KQ FSQKES SYR Y+ KGKSQRR  +KN RKF P
Subjt:  MIHLEGRSPTTGSLIQFGSLEPTVIYSSLEALQNNDIRFVYSKEEEKQVEDADEGWIVVTRRKKHKQKFSQKESRSYREYKRKGKSQRRKARKNARKFRP

Query:  ITEEGEELPRPRQPITLKDFSPEKFPLEIVSCHVVNTTEDDASPSDPIEAKTKLEELPSMCINDFVIPTRNQRYNYRDIKK
        I EE E L RPR+PI LKDF P+ FP+EIVSCH  +TTE+DA PS+ +E   K E+L  + IND +  +R  +    +I K
Subjt:  ITEEGEELPRPRQPITLKDFSPEKFPLEIVSCHVVNTTEDDASPSDPIEAKTKLEELPSMCINDFVIPTRNQRYNYRDIKK

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]1.9e-4458.56Show/hide
Query:  MIHLEGRSPTTGSLIQFGSLEPTVIYSSLEALQNNDIRFVYSKEEEKQVEDADEGWIVVTRRKKHKQKFSQKESRSYREYKRKGKSQRRKARKNARKFRP
        +I  + R    GSLIQFGSLEP VIYSS E LQNND R    KEEEKQV++ +EGW +VTRRKK KQ FSQKES +YR Y+ KGKSQRR  RKN RKF P
Subjt:  MIHLEGRSPTTGSLIQFGSLEPTVIYSSLEALQNNDIRFVYSKEEEKQVEDADEGWIVVTRRKKHKQKFSQKESRSYREYKRKGKSQRRKARKNARKFRP

Query:  ITEEGEELPRPRQPITLKDFSPEKFPLEIVSCHVVNTTEDDASPSDPIEAKTKLEELPSMCINDFVIPTRNQRYNYRDIKK
        I EE E L RPR+PI LKDF P+ FP+EIVSCH  +TTE+DA PS+ +E   K E+L  + IND +  +R  +    +I K
Subjt:  ITEEGEELPRPRQPITLKDFSPEKFPLEIVSCHVVNTTEDDASPSDPIEAKTKLEELPSMCINDFVIPTRNQRYNYRDIKK

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]1.9e-4458.56Show/hide
Query:  MIHLEGRSPTTGSLIQFGSLEPTVIYSSLEALQNNDIRFVYSKEEEKQVEDADEGWIVVTRRKKHKQKFSQKESRSYREYKRKGKSQRRKARKNARKFRP
        +I  + R    GSLIQFGSLEP VIYSS E LQNND R    KEEEKQV++ +EGW +VTRRKK KQ FSQKES +YR Y+ KGKSQRR  RKN RKF P
Subjt:  MIHLEGRSPTTGSLIQFGSLEPTVIYSSLEALQNNDIRFVYSKEEEKQVEDADEGWIVVTRRKKHKQKFSQKESRSYREYKRKGKSQRRKARKNARKFRP

Query:  ITEEGEELPRPRQPITLKDFSPEKFPLEIVSCHVVNTTEDDASPSDPIEAKTKLEELPSMCINDFVIPTRNQRYNYRDIKK
        I EE E L RPR+PI LKDF P+ FP+EIVSCH  +TTE+DA PS+ +E   K E+L  + IND +  +R  +    +I K
Subjt:  ITEEGEELPRPRQPITLKDFSPEKFPLEIVSCHVVNTTEDDASPSDPIEAKTKLEELPSMCINDFVIPTRNQRYNYRDIKK

TrEMBL top hitse value%identityAlignment
A0A5A7TPD2 Ty3-gypsy retrotransposon protein1.4e-5163.54Show/hide
Query:  MIHLEGRSPTTGSLIQFGSLEPTVIYSSLEALQNNDIRFVYSKEEEKQVEDADEGWIVVTRRKKHKQKFSQKESRSYREYKRKGKSQRRKARKNARKFRP
        +I L+ R P  GSLIQFGSLEP VIY S EALQNND + + SKEEEKQ++DADEGW +VTRRKK KQ FSQKESRSYREY+R GKSQRRKARKN RK  P
Subjt:  MIHLEGRSPTTGSLIQFGSLEPTVIYSSLEALQNNDIRFVYSKEEEKQVEDADEGWIVVTRRKKHKQKFSQKESRSYREYKRKGKSQRRKARKNARKFRP

Query:  ITEEGEELPRPRQPITLKDFSPEKFPLEIVSCHVVNTTEDDASPSDPIEAKTKLEELPSMCINDFVIPTRNQRYNYRDIKK
        I EE EELPR RQPITLKDF  E F +EIV CH + TT+DD  PS+ IE   K E+L S+ IND +  ++  +    +I K
Subjt:  ITEEGEELPRPRQPITLKDFSPEKFPLEIVSCHVVNTTEDDASPSDPIEAKTKLEELPSMCINDFVIPTRNQRYNYRDIKK

A0A5A7TZU9 Ribonuclease H9.4e-4558.56Show/hide
Query:  MIHLEGRSPTTGSLIQFGSLEPTVIYSSLEALQNNDIRFVYSKEEEKQVEDADEGWIVVTRRKKHKQKFSQKESRSYREYKRKGKSQRRKARKNARKFRP
        +I  + R    GSLIQFGSLEP VIYSS E LQNND R    KEEEKQV++ +EGW +VTRRKK KQ FSQKES +YR Y+ KGKSQRR  RKN RKF P
Subjt:  MIHLEGRSPTTGSLIQFGSLEPTVIYSSLEALQNNDIRFVYSKEEEKQVEDADEGWIVVTRRKKHKQKFSQKESRSYREYKRKGKSQRRKARKNARKFRP

Query:  ITEEGEELPRPRQPITLKDFSPEKFPLEIVSCHVVNTTEDDASPSDPIEAKTKLEELPSMCINDFVIPTRNQRYNYRDIKK
        I EE E L RPR+PI LKDF P+ FP+EIVSCH  +TTE+DA PS+ +E   K E+L  + IND +  +R  +    +I K
Subjt:  ITEEGEELPRPRQPITLKDFSPEKFPLEIVSCHVVNTTEDDASPSDPIEAKTKLEELPSMCINDFVIPTRNQRYNYRDIKK

A0A5A7VE63 Uncharacterized protein5.5e-4558.56Show/hide
Query:  MIHLEGRSPTTGSLIQFGSLEPTVIYSSLEALQNNDIRFVYSKEEEKQVEDADEGWIVVTRRKKHKQKFSQKESRSYREYKRKGKSQRRKARKNARKFRP
        +I  + R    GSLIQFGSLEP VIYSSLE LQNND R    KEEEKQV++ +EGW +VT RKK KQ FSQKES SYR Y+ KGKSQRR  +KN RKF P
Subjt:  MIHLEGRSPTTGSLIQFGSLEPTVIYSSLEALQNNDIRFVYSKEEEKQVEDADEGWIVVTRRKKHKQKFSQKESRSYREYKRKGKSQRRKARKNARKFRP

Query:  ITEEGEELPRPRQPITLKDFSPEKFPLEIVSCHVVNTTEDDASPSDPIEAKTKLEELPSMCINDFVIPTRNQRYNYRDIKK
        I EE E L RPR+PI LKDF P+ FP+EIVSCH  +TTE+DA PS+ +E   K E+L  + IND +  +R  +    +I K
Subjt:  ITEEGEELPRPRQPITLKDFSPEKFPLEIVSCHVVNTTEDDASPSDPIEAKTKLEELPSMCINDFVIPTRNQRYNYRDIKK

A0A5D3BIH8 Uncharacterized protein9.4e-4558.56Show/hide
Query:  MIHLEGRSPTTGSLIQFGSLEPTVIYSSLEALQNNDIRFVYSKEEEKQVEDADEGWIVVTRRKKHKQKFSQKESRSYREYKRKGKSQRRKARKNARKFRP
        +I  + R    GSLIQFGSLEP VIYSS E LQNND R    KEEEKQV++ +EGW +VTRRKK KQ FSQKES +YR Y+ KGKSQRR  RKN RKF P
Subjt:  MIHLEGRSPTTGSLIQFGSLEPTVIYSSLEALQNNDIRFVYSKEEEKQVEDADEGWIVVTRRKKHKQKFSQKESRSYREYKRKGKSQRRKARKNARKFRP

Query:  ITEEGEELPRPRQPITLKDFSPEKFPLEIVSCHVVNTTEDDASPSDPIEAKTKLEELPSMCINDFVIPTRNQRYNYRDIKK
        I EE E L RPR+PI LKDF P+ FP+EIVSCH  +TTE+DA PS+ +E   K E+L  + IND +  +R  +    +I K
Subjt:  ITEEGEELPRPRQPITLKDFSPEKFPLEIVSCHVVNTTEDDASPSDPIEAKTKLEELPSMCINDFVIPTRNQRYNYRDIKK

A0A5D3D1E5 Ribonuclease H9.4e-4558.56Show/hide
Query:  MIHLEGRSPTTGSLIQFGSLEPTVIYSSLEALQNNDIRFVYSKEEEKQVEDADEGWIVVTRRKKHKQKFSQKESRSYREYKRKGKSQRRKARKNARKFRP
        +I  + R    GSLIQFGSLEP VIYSS E LQNND R    KEEEKQV++ +EGW +VTRRKK KQ FSQKES +YR Y+ KGKSQRR  RKN RKF P
Subjt:  MIHLEGRSPTTGSLIQFGSLEPTVIYSSLEALQNNDIRFVYSKEEEKQVEDADEGWIVVTRRKKHKQKFSQKESRSYREYKRKGKSQRRKARKNARKFRP

Query:  ITEEGEELPRPRQPITLKDFSPEKFPLEIVSCHVVNTTEDDASPSDPIEAKTKLEELPSMCINDFVIPTRNQRYNYRDIKK
        I EE E L RPR+PI LKDF P+ FP+EIVSCH  +TTE+DA PS+ +E   K E+L  + IND +  +R  +    +I K
Subjt:  ITEEGEELPRPRQPITLKDFSPEKFPLEIVSCHVVNTTEDDASPSDPIEAKTKLEELPSMCINDFVIPTRNQRYNYRDIKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCATCTAGAGGGTCGATCACCTACTACAGGGAGTCTAATCCAATTTGGATCTTTGGAGCCTACTGTTATATATTCTTCATTAGAGGCCTTACAAAATAATGACAT
TCGATTTGTTTACTCCAAAGAAGAAGAAAAGCAGGTGGAGGATGCTGACGAGGGATGGATAGTAGTAACACGTCGAAAGAAGCATAAACAAAAATTTTCTCAAAAAGAAT
CTCGTTCGTACCGAGAGTATAAAAGAAAGGGTAAGTCTCAAAGAAGAAAGGCAAGGAAGAATGCAAGGAAGTTTCGACCAATCACTGAAGAAGGTGAAGAGCTTCCTCGA
CCACGACAACCAATAACTTTGAAAGATTTCTCCCCTGAAAAATTTCCATTGGAAATCGTTTCGTGCCATGTTGTCAATACAACTGAGGATGACGCTTCTCCCTCAGATCC
CATAGAGGCAAAAACCAAGCTAGAGGAATTGCCTTCTATGTGCATAAATGATTTTGTCATTCCCACGAGAAATCAAAGATACAATTATCGAGATATTAAAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGATTCATCTAGAGGGTCGATCACCTACTACAGGGAGTCTAATCCAATTTGGATCTTTGGAGCCTACTGTTATATATTCTTCATTAGAGGCCTTACAAAATAATGACAT
TCGATTTGTTTACTCCAAAGAAGAAGAAAAGCAGGTGGAGGATGCTGACGAGGGATGGATAGTAGTAACACGTCGAAAGAAGCATAAACAAAAATTTTCTCAAAAAGAAT
CTCGTTCGTACCGAGAGTATAAAAGAAAGGGTAAGTCTCAAAGAAGAAAGGCAAGGAAGAATGCAAGGAAGTTTCGACCAATCACTGAAGAAGGTGAAGAGCTTCCTCGA
CCACGACAACCAATAACTTTGAAAGATTTCTCCCCTGAAAAATTTCCATTGGAAATCGTTTCGTGCCATGTTGTCAATACAACTGAGGATGACGCTTCTCCCTCAGATCC
CATAGAGGCAAAAACCAAGCTAGAGGAATTGCCTTCTATGTGCATAAATGATTTTGTCATTCCCACGAGAAATCAAAGATACAATTATCGAGATATTAAAAAATGA
Protein sequenceShow/hide protein sequence
MIHLEGRSPTTGSLIQFGSLEPTVIYSSLEALQNNDIRFVYSKEEEKQVEDADEGWIVVTRRKKHKQKFSQKESRSYREYKRKGKSQRRKARKNARKFRPITEEGEELPR
PRQPITLKDFSPEKFPLEIVSCHVVNTTEDDASPSDPIEAKTKLEELPSMCINDFVIPTRNQRYNYRDIKK