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PI0028535 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028535
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptiontransformer-2 protein homolog alpha-like
Genome locationchr10:21039540..21040940
RNA-Seq ExpressionPI0028535
SyntenyPI0028535
Gene Ontology termsGO:0036297 - interstrand cross-link repair (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0004528 - phosphodiesterase I activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0008409 - 5'-3' exonuclease activity (molecular function)
GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
GO:0070336 - flap-structured DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN52185.1 hypothetical protein Csa_009431 [Cucumis sativus]1.7e-3077.19Show/hide
Query:  RRRIEIALILILIYSSMVP-SFAFKQLFVTDNSKHQESEHMEK-HGRRYNIEGPHAYTNVIPIHITITRGGGSRGGGGGSGGGDNGAAGIRDQNYMKFIA
        RRR E ALILILIYSSM+P SFAFKQL +TDNSKHQESEHMEK +GRRYNIEG H YT+ IP HI IT   G RGG G S GG NGAAGI DQN MKFIA
Subjt:  RRRIEIALILILIYSSMVP-SFAFKQLFVTDNSKHQESEHMEK-HGRRYNIEGPHAYTNVIPIHITITRGGGSRGGGGGSGGGDNGAAGIRDQNYMKFIA

Query:  AGVSISIAYLCGLI
        A VSIS+AYLCGLI
Subjt:  AGVSISIAYLCGLI

KGN52711.2 hypothetical protein Csa_008218, partial [Cucumis sativus]4.8e-3375.21Show/hide
Query:  MGRRRRIEIALILILIYSSMVP-SFAFKQLFVTDNSKHQESEHMEK-HGRRYNIEGPHAYTNVIPIHITITRGGGSRGGGGGSGGGDNGAAGIRDQNYMK
        MGRR+   IALILILIYSSM+P S AFKQLF+TDNS HQESEHMEK +GRRYN+EG H YTN IP HI ITRGGG  GGGGG G   NGAAGI DQN M+
Subjt:  MGRRRRIEIALILILIYSSMVP-SFAFKQLFVTDNSKHQESEHMEK-HGRRYNIEGPHAYTNVIPIHITITRGGGSRGGGGGSGGGDNGAAGIRDQNYMK

Query:  FIAAGVSISIAYLCGLI
         IAA VSIS+AYLCGLI
Subjt:  FIAAGVSISIAYLCGLI

XP_008446753.1 PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo]2.4e-4085.09Show/hide
Query:  RRRRIEIALILILIYSSMVPSFAFKQLFVTDNSKHQESEHMEKHGRRYNIEGPHAYTNVIPIH-ITITRGGGSRGGGGGSGGGDNGAAGIRDQNYMKFIA
        RRRR EIALILILIYSSMV SFAFKQLFVTD+ KHQESEHMEKHGRRYNIEG H YTN IPIH ITITRGGG RGGGGG  GG NGA GI D+NYMKFIA
Subjt:  RRRRIEIALILILIYSSMVPSFAFKQLFVTDNSKHQESEHMEKHGRRYNIEGPHAYTNVIPIH-ITITRGGGSRGGGGGSGGGDNGAAGIRDQNYMKFIA

Query:  AGVSISIAYLCGLI
        A VSIS+AYLCGLI
Subjt:  AGVSISIAYLCGLI

XP_022987217.1 glycine-rich protein DOT1-like [Cucurbita maxima]1.4e-1155.68Show/hide
Query:  RRRRIEIALILILIYSSMVPSFAFKQLFVTDNSKHQESEHMEKHGRRYNIEGPHAYTNVIPIHITITRGGGSRGGGGGSGGGDNGAAG
        RRRR E+ALIL+L++SSMV SFAFKQLF TD ++ QESEH EK+G+            VIP+HI I  GGG   GGGG GG   G++G
Subjt:  RRRRIEIALILILIYSSMVPSFAFKQLFVTDNSKHQESEHMEKHGRRYNIEGPHAYTNVIPIHITITRGGGSRGGGGGSGGGDNGAAG

XP_023550250.1 glycine-rich RNA-binding protein 2-like [Cucurbita pepo subsp. pepo]9.8e-1040.97Show/hide
Query:  IALILILIYSSMVPSFAFKQLFVTDNSKHQESEHMEKHGRRYNIEGPHAYTNVIPIHITITRGGGSRGGGGGSGGGDNGAAGIRD---------------
        +ALIL+L+ SSMV SFAFKQLF TD ++ QESEH EK+G+            VIP+ I    GGG   GGGGSGGG  G  G                  
Subjt:  IALILILIYSSMVPSFAFKQLFVTDNSKHQESEHMEKHGRRYNIEGPHAYTNVIPIHITITRGGGSRGGGGGSGGGDNGAAGIRD---------------

Query:  ----------------------QNYMKFIAAGVSISIAYLCGLI
                              QN M+FI AGVS S+AYL  LI
Subjt:  ----------------------QNYMKFIAAGVSISIAYLCGLI

TrEMBL top hitse value%identityAlignment
A0A0A0KRC8 Uncharacterized protein8.3e-3177.19Show/hide
Query:  RRRIEIALILILIYSSMVP-SFAFKQLFVTDNSKHQESEHMEK-HGRRYNIEGPHAYTNVIPIHITITRGGGSRGGGGGSGGGDNGAAGIRDQNYMKFIA
        RRR E ALILILIYSSM+P SFAFKQL +TDNSKHQESEHMEK +GRRYNIEG H YT+ IP HI IT   G RGG G S GG NGAAGI DQN MKFIA
Subjt:  RRRIEIALILILIYSSMVP-SFAFKQLFVTDNSKHQESEHMEK-HGRRYNIEGPHAYTNVIPIHITITRGGGSRGGGGGSGGGDNGAAGIRDQNYMKFIA

Query:  AGVSISIAYLCGLI
        A VSIS+AYLCGLI
Subjt:  AGVSISIAYLCGLI

A0A0A0KWM3 Uncharacterized protein1.6e-3476.92Show/hide
Query:  MGRRRRIEIALILILIYSSMVP-SFAFKQLFVTDNSKHQESEHMEK-HGRRYNIEGPHAYTNVIPIHITITRGGGSRGGGGGSGGGDNGAAGIRDQNYMK
        MGRR+   IALILILIYSSM+P S AFKQLF+TDNS HQESEHMEK +GRRYN+EG H YTN IP HI ITRGGG  GGGGG G   NGAAGI DQN MK
Subjt:  MGRRRRIEIALILILIYSSMVP-SFAFKQLFVTDNSKHQESEHMEK-HGRRYNIEGPHAYTNVIPIHITITRGGGSRGGGGGSGGGDNGAAGIRDQNYMK

Query:  FIAAGVSISIAYLCGLI
        FIAA VSIS+AYLCGLI
Subjt:  FIAAGVSISIAYLCGLI

A0A1S3BFU5 transformer-2 protein homolog alpha-like1.2e-4085.09Show/hide
Query:  RRRRIEIALILILIYSSMVPSFAFKQLFVTDNSKHQESEHMEKHGRRYNIEGPHAYTNVIPIH-ITITRGGGSRGGGGGSGGGDNGAAGIRDQNYMKFIA
        RRRR EIALILILIYSSMV SFAFKQLFVTD+ KHQESEHMEKHGRRYNIEG H YTN IPIH ITITRGGG RGGGGG  GG NGA GI D+NYMKFIA
Subjt:  RRRRIEIALILILIYSSMVPSFAFKQLFVTDNSKHQESEHMEKHGRRYNIEGPHAYTNVIPIH-ITITRGGGSRGGGGGSGGGDNGAAGIRDQNYMKFIA

Query:  AGVSISIAYLCGLI
        A VSIS+AYLCGLI
Subjt:  AGVSISIAYLCGLI

A0A6J1J9S2 glycine-rich protein DOT1-like6.6e-1255.68Show/hide
Query:  RRRRIEIALILILIYSSMVPSFAFKQLFVTDNSKHQESEHMEKHGRRYNIEGPHAYTNVIPIHITITRGGGSRGGGGGSGGGDNGAAG
        RRRR E+ALIL+L++SSMV SFAFKQLF TD ++ QESEH EK+G+            VIP+HI I  GGG   GGGG GG   G++G
Subjt:  RRRRIEIALILILIYSSMVPSFAFKQLFVTDNSKHQESEHMEKHGRRYNIEGPHAYTNVIPIHITITRGGGSRGGGGGSGGGDNGAAG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGAAGAAGAAGAATAGAGATTGCATTGATTTTGATTCTGATCTATTCATCCATGGTGCCTTCATTTGCTTTCAAACAACTCTTTGTAACAGACAATAGTAAGCA
CCAAGAAAGTGAGCATATGGAAAAACATGGTAGAAGATACAATATAGAGGGTCCACATGCTTATACAAATGTGATCCCAATACATATAACAATCACCCGCGGAGGAGGAA
GCAGAGGCGGCGGCGGCGGAAGCGGTGGAGGAGATAACGGTGCCGCAGGAATTCGAGATCAGAACTACATGAAGTTTATAGCAGCTGGAGTTTCCATATCAATTGCATAT
TTGTGTGGACTTATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGAAGAAGAAGAATAGAGATTGCATTGATTTTGATTCTGATCTATTCATCCATGGTGCCTTCATTTGCTTTCAAACAACTCTTTGTAACAGACAATAGTAAGCA
CCAAGAAAGTGAGCATATGGAAAAACATGGTAGAAGATACAATATAGAGGGTCCACATGCTTATACAAATGTGATCCCAATACATATAACAATCACCCGCGGAGGAGGAA
GCAGAGGCGGCGGCGGCGGAAGCGGTGGAGGAGATAACGGTGCCGCAGGAATTCGAGATCAGAACTACATGAAGTTTATAGCAGCTGGAGTTTCCATATCAATTGCATAT
TTGTGTGGACTTATATGA
Protein sequenceShow/hide protein sequence
MGRRRRIEIALILILIYSSMVPSFAFKQLFVTDNSKHQESEHMEKHGRRYNIEGPHAYTNVIPIHITITRGGGSRGGGGGSGGGDNGAAGIRDQNYMKFIAAGVSISIAY
LCGLI