CuGenDBv2

Gene ID	PI0028584
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Genome location	chr03:11305310..11305939
RNA-Seq Expression	PI0028584
Synteny	PI0028584
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039098.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.2e-60

72.58

Show/hide

Query:  MTSKGNTSKALSDISKRPNTRSHSKETQSSEDMPPFEVTKNIWEQLSKPSKRGIIIKENPVIDEHISSSEHSSGETPHPNIMSVMVADVDTSEDKMTELE
        MTS+GNTSKALSDI KRPNTRS S+E QSSEDMPPFEV KNIWEQ+SKP K GI+IKEN  IDEH SSS+ SS E PHPNIMSVMV +VDTSE++M ELE
Subjt:  MTSKGNTSKALSDISKRPNTRSHSKETQSSEDMPPFEVTKNIWEQLSKPSKRGIIIKENPVIDEHISSSEHSSGETPHPNIMSVMVADVDTSEDKMTELE

Query:  RKVNMLMKAIEDRDYEIASLKNHIESRDDAESSHTHTVKNTDKGKANTRKSTTKFDLNCIVVCSA--VAEMIANSIKTQYGGPVIT
        +KVNMLMK +E+RDYEIA LKNHIESRD AESSH HTVKNTDKGKA  ++S  + +L  I   S   + EMIA+SIKTQYGGP  T
Subjt:  RKVNMLMKAIEDRDYEIASLKNHIESRDDAESSHTHTVKNTDKGKANTRKSTTKFDLNCIVVCSA--VAEMIANSIKTQYGGPVIT

KAA0041883.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.9e-60

71.35

Show/hide

Query:  MTSKGNTSKALSDISKRPNTRSHSKETQSSEDMPPFEVTKNIWEQLSKPSKRGIIIKENPVIDEHISSSEHSSGETPHPNIMSVMVADVDTSEDKMTELE
        MTS+GNTSK LSDI KRPNT S S+E QS ED PPFEV KNIWEQ+SKP K GI+IKENP IDEH S SEHSS E  HPNIMSVMV DVDTSE++M ELE
Subjt:  MTSKGNTSKALSDISKRPNTRSHSKETQSSEDMPPFEVTKNIWEQLSKPSKRGIIIKENPVIDEHISSSEHSSGETPHPNIMSVMVADVDTSEDKMTELE

Query:  RKVNMLMKAIEDRDYEIASLKNHIESRDDAESSHTHTVKNTDKGKANTRKSTTKFDLN-CIVVCSAVAEMIANSIKTQYGGPVIT
        +KVNMLMK +E+RDYEIASLKNHIESRD AESSH HTVKNTDKGKA  ++S  +   +   +    + EMIANSIKTQYGGP  T
Subjt:  RKVNMLMKAIEDRDYEIASLKNHIESRDDAESSHTHTVKNTDKGKANTRKSTTKFDLN-CIVVCSAVAEMIANSIKTQYGGPVIT

KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.7e-60

70.81

Show/hide

Query:  MTSKGNTSKALSDISKRPNTRSHSKETQSSEDMPPFEVTKNIWEQLSKPSKRGIIIKENPVIDEHISSSEHSSGETPHPNIMSVMVADVDTSEDKMTELE
        MTS+GNTSKALSDI KRPNTRS S+E QSSEDMPPFEV KNIWEQ+SKP K GI+IKENP IDEH S SE S+ E P PNIMSVMV DVDTSED+M ELE
Subjt:  MTSKGNTSKALSDISKRPNTRSHSKETQSSEDMPPFEVTKNIWEQLSKPSKRGIIIKENPVIDEHISSSEHSSGETPHPNIMSVMVADVDTSEDKMTELE

Query:  RKVNMLMKAIEDRDYEIASLKNHIESRDDAESSHTHTVKNTDKGKANTRKSTTKFDLN-CIVVCSAVAEMIANSIKTQYGGPVIT
        +KVNMLMKA+E++D+EIA LKNHIESRD AESSHTHT+KN +KGKA  ++S  +   +   +    + EMIANSIKTQYGGP  T
Subjt:  RKVNMLMKAIEDRDYEIASLKNHIESRDDAESSHTHTVKNTDKGKANTRKSTTKFDLN-CIVVCSAVAEMIANSIKTQYGGPVIT

KAA0065303.1 retrotransposon gag protein [Cucumis melo var. makuwa]

1.7e-60

71.89

Show/hide

Query:  MTSKGNTSKALSDISKRPNTRSHSKETQSSEDMPPFEVTKNIWEQLSKPSKRGIIIKENPVIDEHISSSEHSSGETPHPNIMSVMVADVDTSEDKMTELE
        MTS+GNTSKALSDI KRPNTRS S+E QSSEDMPPFEV KNIWEQ+SKP K GI+IKEN  IDEH SSS+ SS E PHPNIMSVMVA+VDTSE++M ELE
Subjt:  MTSKGNTSKALSDISKRPNTRSHSKETQSSEDMPPFEVTKNIWEQLSKPSKRGIIIKENPVIDEHISSSEHSSGETPHPNIMSVMVADVDTSEDKMTELE

Query:  RKVNMLMKAIEDRDYEIASLKNHIESRDDAESSHTHTVKNTDKGKANTRKSTTKFDLN-CIVVCSAVAEMIANSIKTQYGGPVIT
        +KVNMLMK +E+RDYEIA LKNHIESRD AESSH HTVKNTDKGKA  ++S  +   +   +    + EMIA+SIKTQYGGP  T
Subjt:  RKVNMLMKAIEDRDYEIASLKNHIESRDDAESSHTHTVKNTDKGKANTRKSTTKFDLN-CIVVCSAVAEMIANSIKTQYGGPVIT

TYK14887.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.2e-60

72.58

Show/hide

Query:  MTSKGNTSKALSDISKRPNTRSHSKETQSSEDMPPFEVTKNIWEQLSKPSKRGIIIKENPVIDEHISSSEHSSGETPHPNIMSVMVADVDTSEDKMTELE
        MTS+GNTSKALSDI KRPNTRS S+E QSSEDMPPFEV KNIWEQ+SKP K GI+IKEN  IDEH SSS+ SS E PHPNIMSVMV +VDTSE++M ELE
Subjt:  MTSKGNTSKALSDISKRPNTRSHSKETQSSEDMPPFEVTKNIWEQLSKPSKRGIIIKENPVIDEHISSSEHSSGETPHPNIMSVMVADVDTSEDKMTELE

Query:  RKVNMLMKAIEDRDYEIASLKNHIESRDDAESSHTHTVKNTDKGKANTRKSTTKFDLNCIVVCSA--VAEMIANSIKTQYGGPVIT
        +KVNMLMK +E+RDYEIA LKNHIESRD AESSH HTVKNTDKGKA  ++S  + +L  I   S   + EMIA+SIKTQYGGP  T
Subjt:  RKVNMLMKAIEDRDYEIASLKNHIESRDDAESSHTHTVKNTDKGKANTRKSTTKFDLNCIVVCSA--VAEMIANSIKTQYGGPVIT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T892 Ty3-gypsy retrotransposon protein

1.1e-60

72.58

Show/hide

Query:  MTSKGNTSKALSDISKRPNTRSHSKETQSSEDMPPFEVTKNIWEQLSKPSKRGIIIKENPVIDEHISSSEHSSGETPHPNIMSVMVADVDTSEDKMTELE
        MTS+GNTSKALSDI KRPNTRS S+E QSSEDMPPFEV KNIWEQ+SKP K GI+IKEN  IDEH SSS+ SS E PHPNIMSVMV +VDTSE++M ELE
Subjt:  MTSKGNTSKALSDISKRPNTRSHSKETQSSEDMPPFEVTKNIWEQLSKPSKRGIIIKENPVIDEHISSSEHSSGETPHPNIMSVMVADVDTSEDKMTELE

Query:  RKVNMLMKAIEDRDYEIASLKNHIESRDDAESSHTHTVKNTDKGKANTRKSTTKFDLNCIVVCSA--VAEMIANSIKTQYGGPVIT
        +KVNMLMK +E+RDYEIA LKNHIESRD AESSH HTVKNTDKGKA  ++S  + +L  I   S   + EMIA+SIKTQYGGP  T
Subjt:  RKVNMLMKAIEDRDYEIASLKNHIESRDDAESSHTHTVKNTDKGKANTRKSTTKFDLNCIVVCSA--VAEMIANSIKTQYGGPVIT

A0A5A7U5H1 Ty3-gypsy retrotransposon protein

8.2e-61

70.81

Show/hide

Query:  MTSKGNTSKALSDISKRPNTRSHSKETQSSEDMPPFEVTKNIWEQLSKPSKRGIIIKENPVIDEHISSSEHSSGETPHPNIMSVMVADVDTSEDKMTELE
        MTS+GNTSKALSDI KRPNTRS S+E QSSEDMPPFEV KNIWEQ+SKP K GI+IKENP IDEH S SE S+ E P PNIMSVMV DVDTSED+M ELE
Subjt:  MTSKGNTSKALSDISKRPNTRSHSKETQSSEDMPPFEVTKNIWEQLSKPSKRGIIIKENPVIDEHISSSEHSSGETPHPNIMSVMVADVDTSEDKMTELE

Query:  RKVNMLMKAIEDRDYEIASLKNHIESRDDAESSHTHTVKNTDKGKANTRKSTTKFDLN-CIVVCSAVAEMIANSIKTQYGGPVIT
        +KVNMLMKA+E++D+EIA LKNHIESRD AESSHTHT+KN +KGKA  ++S  +   +   +    + EMIANSIKTQYGGP  T
Subjt:  RKVNMLMKAIEDRDYEIASLKNHIESRDDAESSHTHTVKNTDKGKANTRKSTTKFDLN-CIVVCSAVAEMIANSIKTQYGGPVIT

A0A5A7VAV4 Retrotransposon gag protein

8.2e-61

71.89

Show/hide

Query:  MTSKGNTSKALSDISKRPNTRSHSKETQSSEDMPPFEVTKNIWEQLSKPSKRGIIIKENPVIDEHISSSEHSSGETPHPNIMSVMVADVDTSEDKMTELE
        MTS+GNTSKALSDI KRPNTRS S+E QSSEDMPPFEV KNIWEQ+SKP K GI+IKEN  IDEH SSS+ SS E PHPNIMSVMVA+VDTSE++M ELE
Subjt:  MTSKGNTSKALSDISKRPNTRSHSKETQSSEDMPPFEVTKNIWEQLSKPSKRGIIIKENPVIDEHISSSEHSSGETPHPNIMSVMVADVDTSEDKMTELE

Query:  RKVNMLMKAIEDRDYEIASLKNHIESRDDAESSHTHTVKNTDKGKANTRKSTTKFDLN-CIVVCSAVAEMIANSIKTQYGGPVIT
        +KVNMLMK +E+RDYEIA LKNHIESRD AESSH HTVKNTDKGKA  ++S  +   +   +    + EMIA+SIKTQYGGP  T
Subjt:  RKVNMLMKAIEDRDYEIASLKNHIESRDDAESSHTHTVKNTDKGKANTRKSTTKFDLN-CIVVCSAVAEMIANSIKTQYGGPVIT

A0A5D3C4W1 Ty3-gypsy retrotransposon protein

1.4e-60

71.35

Show/hide

Query:  MTSKGNTSKALSDISKRPNTRSHSKETQSSEDMPPFEVTKNIWEQLSKPSKRGIIIKENPVIDEHISSSEHSSGETPHPNIMSVMVADVDTSEDKMTELE
        MTS+GNTSK LSDI KRPNT S S+E QS ED PPFEV KNIWEQ+SKP K GI+IKENP IDEH S SEHSS E  HPNIMSVMV DVDTSE++M ELE
Subjt:  MTSKGNTSKALSDISKRPNTRSHSKETQSSEDMPPFEVTKNIWEQLSKPSKRGIIIKENPVIDEHISSSEHSSGETPHPNIMSVMVADVDTSEDKMTELE

Query:  RKVNMLMKAIEDRDYEIASLKNHIESRDDAESSHTHTVKNTDKGKANTRKSTTKFDLN-CIVVCSAVAEMIANSIKTQYGGPVIT
        +KVNMLMK +E+RDYEIASLKNHIESRD AESSH HTVKNTDKGKA  ++S  +   +   +    + EMIANSIKTQYGGP  T
Subjt:  RKVNMLMKAIEDRDYEIASLKNHIESRDDAESSHTHTVKNTDKGKANTRKSTTKFDLN-CIVVCSAVAEMIANSIKTQYGGPVIT

A0A5D3CSH0 Ty3-gypsy retrotransposon protein

1.1e-60

72.58

Show/hide

Query:  MTSKGNTSKALSDISKRPNTRSHSKETQSSEDMPPFEVTKNIWEQLSKPSKRGIIIKENPVIDEHISSSEHSSGETPHPNIMSVMVADVDTSEDKMTELE
        MTS+GNTSKALSDI KRPNTRS S+E QSSEDMPPFEV KNIWEQ+SKP K GI+IKEN  IDEH SSS+ SS E PHPNIMSVMV +VDTSE++M ELE
Subjt:  MTSKGNTSKALSDISKRPNTRSHSKETQSSEDMPPFEVTKNIWEQLSKPSKRGIIIKENPVIDEHISSSEHSSGETPHPNIMSVMVADVDTSEDKMTELE

Query:  RKVNMLMKAIEDRDYEIASLKNHIESRDDAESSHTHTVKNTDKGKANTRKSTTKFDLNCIVVCSA--VAEMIANSIKTQYGGPVIT
        +KVNMLMK +E+RDYEIA LKNHIESRD AESSH HTVKNTDKGKA  ++S  + +L  I   S   + EMIA+SIKTQYGGP  T
Subjt:  RKVNMLMKAIEDRDYEIASLKNHIESRDDAESSHTHTVKNTDKGKANTRKSTTKFDLNCIVVCSA--VAEMIANSIKTQYGGPVIT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACGTCTAAAGGCAACACTTCCAAAGCTCTAAGCGACATTAGCAAGAGGCCAAATACTCGCAGCCACTCAAAAGAGACTCAATCGTCTGAGGATATGCCACCTTTTGA
GGTCACAAAGAATATTTGGGAACAACTGTCAAAGCCATCAAAACGTGGAATTATAATCAAAGAAAATCCTGTAATCGACGAACACATTTCGTCCTCTGAACACTCAAGTG
GGGAGACACCTCACCCAAATATAATGTCAGTTATGGTGGCTGACGTGGATACAAGTGAAGACAAAATGACAGAGCTTGAAAGGAAGGTTAACATGCTCATGAAGGCAATT
GAAGATAGGGATTATGAGATTGCATCTCTCAAGAATCACATCGAGAGTCGTGACGATGCTGAATCAAGTCATACACATACCGTCAAGAATACTGACAAAGGGAAGGCAAA
TACAAGAAAGTCAACCACAAAATTCGACCTCAATTGCATCGTTGTCTGTTCAGCAGTTGCAGAGATGATAGCAAACTCCATCAAAACTCAATATGGTGGACCTGTGATAA
CTTGTAGAAATACAAGTTATTGTAGCCTTTTAAGCGAAGCAATGAAGTCAAAATGCGAAATAAATGATCAGAACGCATAA

mRNA sequence

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Protein sequence

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MTSKGNTSKALSDISKRPNTRSHSKETQSSEDMPPFEVTKNIWEQLSKPSKRGIIIKENPVIDEHISSSEHSSGETPHPNIMSVMVADVDTSEDKMTELERKVNMLMKAI
EDRDYEIASLKNHIESRDDAESSHTHTVKNTDKGKANTRKSTTKFDLNCIVVCSAVAEMIANSIKTQYGGPVITCRNTSYCSLLSEAMKSKCEINDQNA

PI0028584 (gene) of Melon (PI 482460) v1 genome