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PI0028669 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028669
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr04:24107724..24108185
RNA-Seq ExpressionPI0028669
SyntenyPI0028669
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADJ18449.1 gag/pol protein, partial [Bryonia dioica]3.9e-7087.58Show/hide
Query:  MNNSIVQLLPSQKLNGDNYTTWKSNLNTILVVDDIRFVLTEECPQAPTSNANRNVREAYYRWVKANEKTRVYILASMSDVLAKKYESLATTKEIMDSLRE
        MN SIVQLL S+KLNGDNY+ WKSNLNTILVVDD+RFVLTEECPQAP  NANR VREAY RWVKAN+K RVYILASM+DVLAKK++S+AT K IMDSLRE
Subjt:  MNNSIVQLLPSQKLNGDNYTTWKSNLNTILVVDDIRFVLTEECPQAPTSNANRNVREAYYRWVKANEKTRVYILASMSDVLAKKYESLATTKEIMDSLRE

Query:  MFGQPSWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEAN
        MFGQPSWSLRHEAIK+IYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEAN
Subjt:  MFGQPSWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEAN

KAA0035676.1 gag/pol protein [Cucumis melo var. makuwa]5.6e-6986.27Show/hide
Query:  MNNSIVQLLPSQKLNGDNYTTWKSNLNTILVVDDIRFVLTEECPQAPTSNANRNVREAYYRWVKANEKTRVYILASMSDVLAKKYESLATTKEIMDSLRE
        MN+SIVQLL S+KLNGDNY TWKSNLNTILVVDD+RF+LTEECPQ PTSNANR  REAY RW+KANEK RVYILASMSDVLAKK+E LATTKEI+DSL+ 
Subjt:  MNNSIVQLLPSQKLNGDNYTTWKSNLNTILVVDDIRFVLTEECPQAPTSNANRNVREAYYRWVKANEKTRVYILASMSDVLAKKYESLATTKEIMDSLRE

Query:  MFGQPSWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEAN
        MFGQP WSLRHEAIKYIYTKRMK+GTSVREHVLDMMMHFNI EVNGG IDEAN
Subjt:  MFGQPSWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEAN

KAA0050233.1 gag/pol protein [Cucumis melo var. makuwa]6.6e-7089.4Show/hide
Query:  MNNSIVQLLPSQKLNGDNYTTWKSNLNTILVVDDIRFVLTEECPQAPTSNANRNVREAYYRWVKANEKTRVYILASMSDVLAKKYESLATTKEIMDSLRE
        MNNSIVQLL SQKLNGDNY TWKSNLN ILV+DD+RFVLTEE PQ P SNAN+NVREAY RWVKANEK RVYI ASMSDVLAKK+ESLAT KEIMDSLRE
Subjt:  MNNSIVQLLPSQKLNGDNYTTWKSNLNTILVVDDIRFVLTEECPQAPTSNANRNVREAYYRWVKANEKTRVYILASMSDVLAKKYESLATTKEIMDSLRE

Query:  MFGQPSWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDE
        MFGQPSWSLRHEAIKYIYTK+MKEGTSVREHVLDMMMHFNIAEVNGGPI+E
Subjt:  MFGQPSWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDE

XP_038882326.1 uncharacterized protein LOC120073576 [Benincasa hispida]3.6e-6884.97Show/hide
Query:  MNNSIVQLLPSQKLNGDNYTTWKSNLNTILVVDDIRFVLTEECPQAPTSNANRNVREAYYRWVKANEKTRVYILASMSDVLAKKYESLATTKEIMDSLRE
        MNNSI+QLL S+KLNGDNY+ WKSNLNTILVVD++RFVLTEEC QAP SNANR +REAY RW+KANEK RVYILA+MSDVLAKK+ESLATTKEI+DSLRE
Subjt:  MNNSIVQLLPSQKLNGDNYTTWKSNLNTILVVDDIRFVLTEECPQAPTSNANRNVREAYYRWVKANEKTRVYILASMSDVLAKKYESLATTKEIMDSLRE

Query:  MFGQPSWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEAN
        MFGQPSWSLRHEAIK+IYTK MKEGTSVREH+LDMMM+FNIA+VNG PIDEAN
Subjt:  MFGQPSWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEAN

XP_038882358.1 uncharacterized protein LOC120073622 [Benincasa hispida]2.1e-7188.24Show/hide
Query:  MNNSIVQLLPSQKLNGDNYTTWKSNLNTILVVDDIRFVLTEECPQAPTSNANRNVREAYYRWVKANEKTRVYILASMSDVLAKKYESLATTKEIMDSLRE
        MN+SI+QLL S+KLNGDNY+ WKSNLNTILVVDD+RFVLTEECPQAPTSNANR VREAY RWVKANEK R+YILASMSDVLAKK+ESLAT KEI+DSLRE
Subjt:  MNNSIVQLLPSQKLNGDNYTTWKSNLNTILVVDDIRFVLTEECPQAPTSNANRNVREAYYRWVKANEKTRVYILASMSDVLAKKYESLATTKEIMDSLRE

Query:  MFGQPSWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEAN
        +FGQPSWSLRHEAIK+IYTKRMKEGTSVREHVLDMMM+FNIAE NGGPIDEAN
Subjt:  MFGQPSWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEAN

TrEMBL top hitse value%identityAlignment
A0A5A7T0E9 Gag/pol protein2.7e-6986.27Show/hide
Query:  MNNSIVQLLPSQKLNGDNYTTWKSNLNTILVVDDIRFVLTEECPQAPTSNANRNVREAYYRWVKANEKTRVYILASMSDVLAKKYESLATTKEIMDSLRE
        MN+SIVQLL S+KLNGDNY TWKSNLNTILVVDD+RF+LTEECPQ PTSNANR  REAY RW+KANEK RVYILASMSDVLAKK+E LATTKEI+DSL+ 
Subjt:  MNNSIVQLLPSQKLNGDNYTTWKSNLNTILVVDDIRFVLTEECPQAPTSNANRNVREAYYRWVKANEKTRVYILASMSDVLAKKYESLATTKEIMDSLRE

Query:  MFGQPSWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEAN
        MFGQP WSLRHEAIKYIYTKRMK+GTSVREHVLDMMMHFNI EVNGG IDEAN
Subjt:  MFGQPSWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEAN

A0A5A7U2U6 Gag/pol protein3.2e-7089.4Show/hide
Query:  MNNSIVQLLPSQKLNGDNYTTWKSNLNTILVVDDIRFVLTEECPQAPTSNANRNVREAYYRWVKANEKTRVYILASMSDVLAKKYESLATTKEIMDSLRE
        MNNSIVQLL SQKLNGDNY TWKSNLN ILV+DD+RFVLTEE PQ P SNAN+NVREAY RWVKANEK RVYI ASMSDVLAKK+ESLAT KEIMDSLRE
Subjt:  MNNSIVQLLPSQKLNGDNYTTWKSNLNTILVVDDIRFVLTEECPQAPTSNANRNVREAYYRWVKANEKTRVYILASMSDVLAKKYESLATTKEIMDSLRE

Query:  MFGQPSWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDE
        MFGQPSWSLRHEAIKYIYTK+MKEGTSVREHVLDMMMHFNIAEVNGGPI+E
Subjt:  MFGQPSWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDE

A0A5D3DL59 Gag/pol protein3.9e-6884.31Show/hide
Query:  MNNSIVQLLPSQKLNGDNYTTWKSNLNTILVVDDIRFVLTEECPQAPTSNANRNVREAYYRWVKANEKTRVYILASMSDVLAKKYESLATTKEIMDSLRE
        MN+SIVQLL S+KLNGDNY  WKSNLNTILVVDD+RFVLTEECP+ PTSNANR  R+AY RW+KANEK RVYILASMSDVLAKK+ESLAT KEIM+SL+ 
Subjt:  MNNSIVQLLPSQKLNGDNYTTWKSNLNTILVVDDIRFVLTEECPQAPTSNANRNVREAYYRWVKANEKTRVYILASMSDVLAKKYESLATTKEIMDSLRE

Query:  MFGQPSWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEAN
        MFGQP WSLRHEAIKYIYTKRMKEGTS+REHVLDMM+HFNI EVNGG IDEAN
Subjt:  MFGQPSWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEAN

A0A5D3E173 Gag/pol protein3.9e-6884.97Show/hide
Query:  MNNSIVQLLPSQKLNGDNYTTWKSNLNTILVVDDIRFVLTEECPQAPTSNANRNVREAYYRWVKANEKTRVYILASMSDVLAKKYESLATTKEIMDSLRE
        MN+SIVQLL S+KLNGDNY  WKSNLNTILVVDD+RF+LTEEC Q PT NANR  R+AY RW+KANEK RVYILASMSDVLAKKYESLAT KEIMDSL+ 
Subjt:  MNNSIVQLLPSQKLNGDNYTTWKSNLNTILVVDDIRFVLTEECPQAPTSNANRNVREAYYRWVKANEKTRVYILASMSDVLAKKYESLATTKEIMDSLRE

Query:  MFGQPSWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEAN
        +FGQP WSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAE+NGG IDEAN
Subjt:  MFGQPSWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEAN

E2GK51 Gag/pol protein (Fragment)1.9e-7087.58Show/hide
Query:  MNNSIVQLLPSQKLNGDNYTTWKSNLNTILVVDDIRFVLTEECPQAPTSNANRNVREAYYRWVKANEKTRVYILASMSDVLAKKYESLATTKEIMDSLRE
        MN SIVQLL S+KLNGDNY+ WKSNLNTILVVDD+RFVLTEECPQAP  NANR VREAY RWVKAN+K RVYILASM+DVLAKK++S+AT K IMDSLRE
Subjt:  MNNSIVQLLPSQKLNGDNYTTWKSNLNTILVVDDIRFVLTEECPQAPTSNANRNVREAYYRWVKANEKTRVYILASMSDVLAKKYESLATTKEIMDSLRE

Query:  MFGQPSWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEAN
        MFGQPSWSLRHEAIK+IYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEAN
Subjt:  MFGQPSWSLRHEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEAN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAACTCCATAGTACAACTTTTGCCTTCTCAAAAACTTAACGGCGACAATTATACTACTTGGAAATCAAACTTAAATACAATACTAGTCGTAGATGATATAAGGTT
TGTCTTAACTGAGGAATGTCCTCAAGCCCCGACCTCAAATGCTAACCGAAATGTTCGAGAAGCATATTATCGATGGGTTAAGGCCAATGAAAAGACCCGTGTCTATATTC
TTGCAAGCATGTCTGATGTTTTGGCAAAGAAATATGAATCCTTAGCTACGACTAAAGAGATTATGGATTCATTGAGGGAAATGTTTGGTCAGCCTTCATGGTCCCTCAGA
CACGAAGCAATTAAGTATATTTACACTAAGCGAATGAAGGAAGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGATGCACTTCAATATCGCTGAAGTAAATGGTGG
TCCCATTGATGAGGCAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATAACTCCATAGTACAACTTTTGCCTTCTCAAAAACTTAACGGCGACAATTATACTACTTGGAAATCAAACTTAAATACAATACTAGTCGTAGATGATATAAGGTT
TGTCTTAACTGAGGAATGTCCTCAAGCCCCGACCTCAAATGCTAACCGAAATGTTCGAGAAGCATATTATCGATGGGTTAAGGCCAATGAAAAGACCCGTGTCTATATTC
TTGCAAGCATGTCTGATGTTTTGGCAAAGAAATATGAATCCTTAGCTACGACTAAAGAGATTATGGATTCATTGAGGGAAATGTTTGGTCAGCCTTCATGGTCCCTCAGA
CACGAAGCAATTAAGTATATTTACACTAAGCGAATGAAGGAAGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGATGCACTTCAATATCGCTGAAGTAAATGGTGG
TCCCATTGATGAGGCAAATTAG
Protein sequenceShow/hide protein sequence
MNNSIVQLLPSQKLNGDNYTTWKSNLNTILVVDDIRFVLTEECPQAPTSNANRNVREAYYRWVKANEKTRVYILASMSDVLAKKYESLATTKEIMDSLREMFGQPSWSLR
HEAIKYIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEAN