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PI0028670 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028670
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr04:22196513..22196773
RNA-Seq ExpressionPI0028670
SyntenyPI0028670
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062295.1 hypothetical protein E6C27_scaffold154G00380 [Cucumis melo var. makuwa]6.0e-2873.26Show/hide
Query:  MCDTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKDVAPRI
        MCD SD  +GAMLGQK DKVI+PIY  SKTL + QENYTTTEKELLA+VFAIEK+ SYIVGSKVT+HSDH AIR+ M KKD  P++
Subjt:  MCDTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKDVAPRI

KAA0062414.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]1.7e-2780.25Show/hide
Query:  MCDTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKD
        MCD SD  VG M GQKKDKV  PIYYA KTL + +ENYTT EKELLAIVFAIEKFRSYIVGSKVT+HSDHSAIR+ MAKKD
Subjt:  MCDTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKD

KAD4178046.1 hypothetical protein E3N88_26637 [Mikania micrantha]7.8e-2873.26Show/hide
Query:  MCDTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKDVAPRI
        MCD SD AVGA+LGQ++DK  HPIYYASKTL D QENYTTTEKELLA+VFA +KFRSY+V SK TV +DHSA+RF  AKKD  PR+
Subjt:  MCDTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKDVAPRI

WP_217833163.1 Ty3/Gypsy family RNase HI domain-containing protein, partial [Synechococcus sp. PCC 7002]6.0e-2868.6Show/hide
Query:  MCDTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKDVAPRI
        MCD S+  VGA+LGQ+K+K++HPIYYASKTL   QENYTTTEKE+LAIVFA++KFR+Y +GSKVT++SDHSAI++ M KKD  PR+
Subjt:  MCDTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKDVAPRI

XP_024015893.1 uncharacterized protein LOC112089147 [Eutrema salsugineum]1.3e-2770.93Show/hide
Query:  MCDTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKDVAPRI
        MCD SD AVGA+LGQKKDK +H IYYAS+TL D Q NY TTEKELLA+VFA EKFR Y+VGSKV VH+DHS++++FM KKD  PR+
Subjt:  MCDTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKDVAPRI

TrEMBL top hitse value%identityAlignment
A0A5A7V586 Retrovirus-related Pol polyprotein from transposon 17.68.4e-2880.25Show/hide
Query:  MCDTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKD
        MCD SD  VG M GQKKDKV  PIYYA KTL + +ENYTT EKELLAIVFAIEKFRSYIVGSKVT+HSDHSAIR+ MAKKD
Subjt:  MCDTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKD

A0A5A7V8R9 RT_RNaseH domain-containing protein2.9e-2873.26Show/hide
Query:  MCDTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKDVAPRI
        MCD SD  +GAMLGQK DKVI+PIY  SKTL + QENYTTTEKELLA+VFAIEK+ SYIVGSKVT+HSDH AIR+ M KKD  P++
Subjt:  MCDTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKDVAPRI

A0A5D3DS34 Retrovirus-related Pol polyprotein from transposon 17.68.4e-2880.25Show/hide
Query:  MCDTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKD
        MCD SD  VG M GQKKDKV  PIYYA KTL + +ENYTT EKELLAIVFAIEKFRSYIVGSKVT+HSDHSAIR+ MAKKD
Subjt:  MCDTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKD

A0A5N6MV81 Integrase catalytic domain-containing protein3.8e-2873.26Show/hide
Query:  MCDTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKDVAPRI
        MCD SD AVGA+LGQ++DK  HPIYYASKTL D QENYTTTEKELLA+VFA +KFRSY+V SK TV +DHSA+RF  AKKD  PR+
Subjt:  MCDTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKDVAPRI

A0A5N6N1V6 Integrase catalytic domain-containing protein1.1e-2772.09Show/hide
Query:  MCDTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKDVAPRI
        MCD SD AVGA+LGQ++DK  HPIYYASKTL D QENYTTTEKELLA+VFA +KFRSY+V SK TV +DHSA+RF   KKD  PR+
Subjt:  MCDTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKDVAPRI

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.66.9e-1144.3Show/hide
Query:  DTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKD
        D SD A+GA+L Q      HP+ Y S+TL + + NY+T EKELLAIV+A + FR Y++G    + SDH  + +    KD
Subjt:  DTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKD

P10394 Retrovirus-related Pol polyprotein from transposon 4121.0e-0639.47Show/hide
Query:  DTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMA
        D S  A GA+L Q  +    P+ YAS+     + N +TTE+EL AI +AI  FR YI G   TV +DH  + +  +
Subjt:  DTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMA

P10401 Retrovirus-related Pol polyprotein from transposon gypsy1.1e-0836.47Show/hide
Query:  DTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSK-VTVHSDHSAIRFFMAKKDVAPRI
        D S + +GA+L Q+      PI   S+TLK  ++NY T E+ELLAIV+A+ K ++++ GS+ + + +DH  + F +A ++   +I
Subjt:  DTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSK-VTVHSDHSAIRFFMAKKDVAPRI

P20825 Retrovirus-related Pol polyprotein from transposon 2973.4e-1040.48Show/hide
Query:  DTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKDVAPRI
        D S+ A+GA+L Q      HPI + S+TL D + NY+  EKELLAIV+A + FR Y++G +  + SDH  +R+    K+   ++
Subjt:  DTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKDVAPRI

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus2.2e-0936.25Show/hide
Query:  DTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGS-KVTVHSDHSAIRFFMAKKD
        D S+ A+GA+L Q       PI Y S++L   +ENY T EKE+LAI+++++  R+Y+ G+  + V++DH  + F +  ++
Subjt:  DTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGS-KVTVHSDHSAIRFFMAKKD

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGACACGAGTGATGCAGCGGTAGGGGCTATGCTGGGTCAAAAGAAAGACAAAGTGATCCACCCGATATACTATGCGAGCAAGACCCTCAAAGATGTTCAAGAAAA
CTACACCACTACAGAGAAGGAATTGCTTGCGATAGTATTTGCAATTGAAAAGTTTAGAAGTTACATCGTTGGCTCCAAAGTTACGGTACATTCTGATCATTCTGCGATCA
GATTCTTTATGGCGAAGAAAGATGTTGCTCCAAGAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGACACGAGTGATGCAGCGGTAGGGGCTATGCTGGGTCAAAAGAAAGACAAAGTGATCCACCCGATATACTATGCGAGCAAGACCCTCAAAGATGTTCAAGAAAA
CTACACCACTACAGAGAAGGAATTGCTTGCGATAGTATTTGCAATTGAAAAGTTTAGAAGTTACATCGTTGGCTCCAAAGTTACGGTACATTCTGATCATTCTGCGATCA
GATTCTTTATGGCGAAGAAAGATGTTGCTCCAAGAATTTGA
Protein sequenceShow/hide protein sequence
MCDTSDAAVGAMLGQKKDKVIHPIYYASKTLKDVQENYTTTEKELLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFFMAKKDVAPRI