; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0028672 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028672
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr10:828595..829107
RNA-Seq ExpressionPI0028672
SyntenyPI0028672
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032849.1 reverse transcriptase [Cucumis melo var. makuwa]4.6e-8086.47Show/hide
Query:  MEDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRG
        ME+GKIAAIRDW +P +VSELRSFL LANYYRRFV+GFSKR SP+T+LLKKD  W+W PECQTAFD LKQA+ E P+LGIADVTKPFEVETDASDYAL G
Subjt:  MEDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRG

Query:  VLLQNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK
        VLLQNGHPIAYESRKLNA ERRYTVSEKEMLAVVHCLRAWRQYLLGS+FVVKTDNSATCHFF+QPKLTSK
Subjt:  VLLQNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]4.6e-8086.47Show/hide
Query:  MEDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRG
        ME+GKIAAIRDW +P +VSELRSFL LANYYRRFV+GFSKR SP+T+LLKKD  W+W PECQTAFD LKQA+ E P+LGIADVTKPFEVETDASDYAL G
Subjt:  MEDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRG

Query:  VLLQNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK
        VLLQNGHPIAYESRKLNA ERRYTVSEKEMLAVVHCLRAWRQYLLGS+FVVKTDNSATCHFF+QPKLTSK
Subjt:  VLLQNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]4.6e-8086.47Show/hide
Query:  MEDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRG
        ME+GKIAAIRDW +P +VSELRSFL LANYYRRFV+GFSKR SP+T+LLKKD  W+W PECQTAFD LKQA+ E P+LGIADVTKPFEVETDASDYAL G
Subjt:  MEDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRG

Query:  VLLQNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK
        VLLQNGHPIAYESRKLNA ERRYTVSEKEMLAVVHCLRAWRQYLLGS+FVVKTDNSATCHFF+QPKLTSK
Subjt:  VLLQNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK

KAA0064232.1 reverse transcriptase [Cucumis melo var. makuwa]3.5e-8086.47Show/hide
Query:  MEDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRG
        ME+GKIAAIRDW +P +VSELRSFLRLANYYRRFV+GFSKR SP+T+LLKKD  W+W PECQ AFD LKQAM E P+LGIADVTKPFEVETDASDYAL G
Subjt:  MEDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRG

Query:  VLLQNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK
        VLLQNGHPIAYESRKLN  ERRYTVSEKEMLAVVHCLRAWRQYLLGS+FVVKTDNSATCHFF+QPKLTSK
Subjt:  VLLQNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]4.6e-8086.47Show/hide
Query:  MEDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRG
        ME+GKIAAIRDW +P +VSELRSFL LANYYRRFV+GFSKR SP+T+LLKKD  W+W PECQTAFD LKQA+ E P+LGIADVTKPFEVETDASDYAL G
Subjt:  MEDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRG

Query:  VLLQNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK
        VLLQNGHPIAYESRKLNA ERRYTVSEKEMLAVVHCLRAWRQYLLGS+FVVKTDNSATCHFF+QPKLTSK
Subjt:  VLLQNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK

TrEMBL top hitse value%identityAlignment
A0A5A7T0E2 Reverse transcriptase2.2e-8086.47Show/hide
Query:  MEDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRG
        ME+GKIAAIRDW +P +VSELRSFL LANYYRRFV+GFSKR SP+T+LLKKD  W+W PECQTAFD LKQA+ E P+LGIADVTKPFEVETDASDYAL G
Subjt:  MEDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRG

Query:  VLLQNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK
        VLLQNGHPIAYESRKLNA ERRYTVSEKEMLAVVHCLRAWRQYLLGS+FVVKTDNSATCHFF+QPKLTSK
Subjt:  VLLQNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK

A0A5A7UXR6 Reverse transcriptase2.2e-8086.47Show/hide
Query:  MEDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRG
        ME+GKIAAIRDW +P +VSELRSFL LANYYRRFV+GFSKR SP+T+LLKKD  W+W PECQTAFD LKQA+ E P+LGIADVTKPFEVETDASDYAL G
Subjt:  MEDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRG

Query:  VLLQNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK
        VLLQNGHPIAYESRKLNA ERRYTVSEKEMLAVVHCLRAWRQYLLGS+FVVKTDNSATCHFF+QPKLTSK
Subjt:  VLLQNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK

A0A5A7V785 Reverse transcriptase1.7e-8086.47Show/hide
Query:  MEDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRG
        ME+GKIAAIRDW +P +VSELRSFLRLANYYRRFV+GFSKR SP+T+LLKKD  W+W PECQ AFD LKQAM E P+LGIADVTKPFEVETDASDYAL G
Subjt:  MEDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRG

Query:  VLLQNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK
        VLLQNGHPIAYESRKLN  ERRYTVSEKEMLAVVHCLRAWRQYLLGS+FVVKTDNSATCHFF+QPKLTSK
Subjt:  VLLQNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK

A0A5D3BRZ6 Reverse transcriptase2.2e-8086.47Show/hide
Query:  MEDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRG
        ME+GKIAAIRDW +P +VSELRSFL LANYYRRFV+GFSKR SP+T+LLKKD  W+W PECQTAFD LKQA+ E P+LGIADVTKPFEVETDASDYAL G
Subjt:  MEDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRG

Query:  VLLQNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK
        VLLQNGHPIAYESRKLNA ERRYTVSEKEMLAVVHCLRAWRQYLLGS+FVVKTDNSATCHFF+QPKLTSK
Subjt:  VLLQNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK

A0A5D3C4R1 Reverse transcriptase2.2e-8086.47Show/hide
Query:  MEDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRG
        ME+GKIAAIRDW +P +VSELRSFL LANYYRRFV+GFSKR SP+T+LLKKD  W+W PECQTAFD LKQA+ E P+LGIADVTKPFEVETDASDYAL G
Subjt:  MEDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRG

Query:  VLLQNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK
        VLLQNGHPIAYESRKLNA ERRYTVSEKEMLAVVHCLRAWRQYLLGS+FVVKTDNSATCHFF+QPKLTSK
Subjt:  VLLQNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.8e-3142.51Show/hide
Query:  KIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWT-PECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRGVLL
        KI AI+ + +PT   E+++FL L  YYR+F+  F+    PMT  LKK+ + D T PE  +AF +LK  ++E P+L + D TK F + TDASD AL  VL 
Subjt:  KIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWT-PECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRGVLL

Query:  QNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK
        Q+GHP++Y SR LN  E  Y+  EKE+LA+V   + +R YLLG  F + +D+      +      SK
Subjt:  QNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK

P0CT34 Transposon Tf2-1 polyprotein1.2e-2539.49Show/hide
Query:  IAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRGVLLQN
        I  +  WK P    ELR FL   NY R+F+   S+   P+ +LLKKD +W WTP    A + +KQ +   PVL   D +K   +ETDASD A+  VL Q 
Subjt:  IAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRGVLLQN

Query:  G-----HPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGS--AFVVKTDN
              +P+ Y S K++  +  Y+VS+KEMLA++  L+ WR YL  +   F + TD+
Subjt:  G-----HPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGS--AFVVKTDN

P0CT41 Transposon Tf2-12 polyprotein1.2e-2539.49Show/hide
Query:  IAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRGVLLQN
        I  +  WK P    ELR FL   NY R+F+   S+   P+ +LLKKD +W WTP    A + +KQ +   PVL   D +K   +ETDASD A+  VL Q 
Subjt:  IAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRGVLLQN

Query:  G-----HPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGS--AFVVKTDN
              +P+ Y S K++  +  Y+VS+KEMLA++  L+ WR YL  +   F + TD+
Subjt:  G-----HPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGS--AFVVKTDN

P20825 Retrovirus-related Pol polyprotein from transposon 2972.7e-2742.11Show/hide
Query:  KIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTP-ECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRGVLL
        K+ AI  + +PT   E+R+FL L  YYR+F+  ++    PMT  LKK ++ D    E   AF++LK  +   P+L + D  K F + TDAS+ AL  VL 
Subjt:  KIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTP-ECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRGVLL

Query:  QNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDN
        QNGHPI++ SR LN  E  Y+  EKE+LA+V   + +R YLLG  F++ +D+
Subjt:  QNGHPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDN

Q9UR07 Transposon Tf2-11 polyprotein1.2e-2539.49Show/hide
Query:  IAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRGVLLQN
        I  +  WK P    ELR FL   NY R+F+   S+   P+ +LLKKD +W WTP    A + +KQ +   PVL   D +K   +ETDASD A+  VL Q 
Subjt:  IAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRGVLLQN

Query:  G-----HPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGS--AFVVKTDN
              +P+ Y S K++  +  Y+VS+KEMLA++  L+ WR YL  +   F + TD+
Subjt:  G-----HPIAYESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGS--AFVVKTDN

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein9.4e-1546.51Show/hide
Query:  EDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPF
        +  K+ A+  W  P   +ELR FL L  YYRRFVK + K V P+T+LLKK+S   WT     AF  LK A+T  PVL + D+  PF
Subjt:  EDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGATGGGAAGATCGCAGCGATCCGGGATTGGAAGTTGCCAACCACAGTTTCGGAACTGCGTTCCTTCCTTAGATTAGCCAACTACTATCGGCGATTCGTGAAAGG
ATTCTCCAAAAGAGTAAGCCCAATGACCGATTTGCTGAAAAAGGACAGCCAGTGGGATTGGACCCCCGAGTGTCAGACTGCATTTGATAGGTTAAAACAAGCCATGACCG
AAAGACCAGTGCTTGGGATTGCCGATGTGACAAAACCCTTCGAGGTCGAAACGGATGCATCAGATTATGCCCTGAGGGGTGTCCTCCTGCAGAATGGACACCCCATAGCT
TATGAGAGTCGGAAACTGAATGCGACGGAGAGGAGGTATACAGTCTCCGAGAAGGAGATGCTCGCCGTAGTCCATTGTTTGAGGGCCTGGAGGCAGTATCTGTTGGGTTC
TGCATTCGTTGTAAAAACTGATAACAGTGCTACTTGCCACTTCTTTAGTCAGCCAAAATTGACTTCGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGATGGGAAGATCGCAGCGATCCGGGATTGGAAGTTGCCAACCACAGTTTCGGAACTGCGTTCCTTCCTTAGATTAGCCAACTACTATCGGCGATTCGTGAAAGG
ATTCTCCAAAAGAGTAAGCCCAATGACCGATTTGCTGAAAAAGGACAGCCAGTGGGATTGGACCCCCGAGTGTCAGACTGCATTTGATAGGTTAAAACAAGCCATGACCG
AAAGACCAGTGCTTGGGATTGCCGATGTGACAAAACCCTTCGAGGTCGAAACGGATGCATCAGATTATGCCCTGAGGGGTGTCCTCCTGCAGAATGGACACCCCATAGCT
TATGAGAGTCGGAAACTGAATGCGACGGAGAGGAGGTATACAGTCTCCGAGAAGGAGATGCTCGCCGTAGTCCATTGTTTGAGGGCCTGGAGGCAGTATCTGTTGGGTTC
TGCATTCGTTGTAAAAACTGATAACAGTGCTACTTGCCACTTCTTTAGTCAGCCAAAATTGACTTCGAAGTAG
Protein sequenceShow/hide protein sequence
MEDGKIAAIRDWKLPTTVSELRSFLRLANYYRRFVKGFSKRVSPMTDLLKKDSQWDWTPECQTAFDRLKQAMTERPVLGIADVTKPFEVETDASDYALRGVLLQNGHPIA
YESRKLNATERRYTVSEKEMLAVVHCLRAWRQYLLGSAFVVKTDNSATCHFFSQPKLTSK