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PI0028738 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028738
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr01:9181391..9185579
RNA-Seq ExpressionPI0028738
SyntenyPI0028738
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051064.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.0e-4052.15Show/hide
Query:  LQVTQCGVCGLIGHVNNK-----NVIGGYKRYDPHANTYNAGWRGHPNLRWGNEDHKPTHFAPPPSTSNQGTSLEDLVKTLATNTISFQQDMKQFQQEAR
        L+VT+CGVCGL+GH N+K       +  ++RYDPH NTYN+GWR +PNLRWGN++ K  H   PP++SNQ T+LED++K LATNT+SF+Q+MKQ      
Subjt:  LQVTQCGVCGLIGHVNNK-----NVIGGYKRYDPHANTYNAGWRGHPNLRWGNEDHKPTHFAPPPSTSNQGTSLEDLVKTLATNTISFQQDMKQFQQEAR

Query:  TRISNLGTQMTQLTTTVSKLEGKGKLPAQPNHANVSAISLQSGKVLNSSIDDIPMIKSNPPPLDEHSDVNNNKEKDTSPQPSQSKD
                QMTQLTT +SK++GKGKL AQP+HANVSAISL+SGK+L++S      I S P PL+     N  ++ + +P PS SK+
Subjt:  TRISNLGTQMTQLTTTVSKLEGKGKLPAQPNHANVSAISLQSGKVLNSSIDDIPMIKSNPPPLDEHSDVNNNKEKDTSPQPSQSKD

KAA0056553.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.4e-4051.08Show/hide
Query:  LQVTQCGVCGLIGHVNNK--NVIGG---YKRYDPHANTYNAGWRGHPNLRWGNEDHKPTHFAPPPSTSNQGTSLEDLVKTLATNTISFQQDMKQFQQEAR
        L++T+CGVCGL+GH N+K   VIG     +RY+PH NTYN+GWR +PNLRWGN++ K  H   PP++S QGT+LED++K L TNT+SFQQ+MKQ      
Subjt:  LQVTQCGVCGLIGHVNNK--NVIGG---YKRYDPHANTYNAGWRGHPNLRWGNEDHKPTHFAPPPSTSNQGTSLEDLVKTLATNTISFQQDMKQFQQEAR

Query:  TRISNLGTQMTQLTTTVSKLEGKGKLPAQPNHANVSAISLQSGKVLNSSIDDIPMIKSNPPPLDEHSDVNNNKEKDTSPQPSQSKD
                QMTQ TT +SK++GKGKLPAQ +HANVSAISL+SGK+L+S    +  + S P PL+  ++ +  ++ +T+P PS S++
Subjt:  TRISNLGTQMTQLTTTVSKLEGKGKLPAQPNHANVSAISLQSGKVLNSSIDDIPMIKSNPPPLDEHSDVNNNKEKDTSPQPSQSKD

KAA0061315.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.9e-4051.61Show/hide
Query:  LQVTQCGVCGLIGHVNNK-----NVIGGYKRYDPHANTYNAGWRGHPNLRWGNEDHKPTHFAPPPSTSNQGTSLEDLVKTLATNTISFQQDMKQFQQEAR
        L+VT+CGVCGL+GH N+K       +   +RYDPH NTYN+GWR +PNLRWGN++ K TH   P ++S QGT+LED++K LATNT+SFQQ+MKQ      
Subjt:  LQVTQCGVCGLIGHVNNK-----NVIGGYKRYDPHANTYNAGWRGHPNLRWGNEDHKPTHFAPPPSTSNQGTSLEDLVKTLATNTISFQQDMKQFQQEAR

Query:  TRISNLGTQMTQLTTTVSKLEGKGKLPAQPNHANVSAISLQSGKVLNSSIDDIPMIKSNPPPLDEHSDVNNNKEKDTSPQPSQSKD
                QMTQLTTT SK++GKGKL AQP HANVS ISL+SGK+L++       + S P PL+  ++ +  ++ +T+P PS SK+
Subjt:  TRISNLGTQMTQLTTTVSKLEGKGKLPAQPNHANVSAISLQSGKVLNSSIDDIPMIKSNPPPLDEHSDVNNNKEKDTSPQPSQSKD

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.0e-4050.25Show/hide
Query:  TPIASLPSGS-LQVTQCGVCGLIGHVNNK-----NVIGGYKRYDPHANTYNAGWRGHPNLRWGNEDHKPTHFAPPPSTSNQGTSLEDLVKTLATNTISFQ
        T + S   G+ L+VT+CGVCGL+GH+N K       +   +RYDPH+NTYN+GWR +PNLRWGN++ K  H   P ++SNQGT+LED++K LATNT+SFQ
Subjt:  TPIASLPSGS-LQVTQCGVCGLIGHVNNK-----NVIGGYKRYDPHANTYNAGWRGHPNLRWGNEDHKPTHFAPPPSTSNQGTSLEDLVKTLATNTISFQ

Query:  QDMKQFQQEARTRISNLGTQMTQLTTTVSKLEGKGKLPAQPNHANVSAISLQSGKVLNSSIDDIPMIKSNPPPLDEHSDVNNNKEKDTSPQPSQSKD
        Q+MKQ              QMTQLTT +SK++GKGKLPAQ +HANVSAISL+SGK+L++       + S P PL+  ++ +  ++ +T+P PS SK+
Subjt:  QDMKQFQQEARTRISNLGTQMTQLTTTVSKLEGKGKLPAQPNHANVSAISLQSGKVLNSSIDDIPMIKSNPPPLDEHSDVNNNKEKDTSPQPSQSKD

TYK14267.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.9e-4051.61Show/hide
Query:  LQVTQCGVCGLIGHVNNK-----NVIGGYKRYDPHANTYNAGWRGHPNLRWGNEDHKPTHFAPPPSTSNQGTSLEDLVKTLATNTISFQQDMKQFQQEAR
        L+VT+CGVCGL+GH N+K       +   +RYDPH NTYN+GWR +PNLRWGN++ K TH   P ++S QGT+LED++K LATNT+SFQQ+MKQ      
Subjt:  LQVTQCGVCGLIGHVNNK-----NVIGGYKRYDPHANTYNAGWRGHPNLRWGNEDHKPTHFAPPPSTSNQGTSLEDLVKTLATNTISFQQDMKQFQQEAR

Query:  TRISNLGTQMTQLTTTVSKLEGKGKLPAQPNHANVSAISLQSGKVLNSSIDDIPMIKSNPPPLDEHSDVNNNKEKDTSPQPSQSKD
                QMTQLTTT SK++GKGKL AQP HANVS ISL+SGK+L++       + S P PL+  ++ +  ++ +T+P PS SK+
Subjt:  TRISNLGTQMTQLTTTVSKLEGKGKLPAQPNHANVSAISLQSGKVLNSSIDDIPMIKSNPPPLDEHSDVNNNKEKDTSPQPSQSKD

TrEMBL top hitse value%identityAlignment
A0A5A7U6X0 Retrotransposon gag protein9.7e-4152.15Show/hide
Query:  LQVTQCGVCGLIGHVNNK-----NVIGGYKRYDPHANTYNAGWRGHPNLRWGNEDHKPTHFAPPPSTSNQGTSLEDLVKTLATNTISFQQDMKQFQQEAR
        L+VT+CGVCGL+GH N+K       +  ++RYDPH NTYN+GWR +PNLRWGN++ K  H   PP++SNQ T+LED++K LATNT+SF+Q+MKQ      
Subjt:  LQVTQCGVCGLIGHVNNK-----NVIGGYKRYDPHANTYNAGWRGHPNLRWGNEDHKPTHFAPPPSTSNQGTSLEDLVKTLATNTISFQQDMKQFQQEAR

Query:  TRISNLGTQMTQLTTTVSKLEGKGKLPAQPNHANVSAISLQSGKVLNSSIDDIPMIKSNPPPLDEHSDVNNNKEKDTSPQPSQSKD
                QMTQLTT +SK++GKGKL AQP+HANVSAISL+SGK+L++S      I S P PL+     N  ++ + +P PS SK+
Subjt:  TRISNLGTQMTQLTTTVSKLEGKGKLPAQPNHANVSAISLQSGKVLNSSIDDIPMIKSNPPPLDEHSDVNNNKEKDTSPQPSQSKD

A0A5A7V668 Retrotransposon gag protein4.8e-4051.61Show/hide
Query:  LQVTQCGVCGLIGHVNNK-----NVIGGYKRYDPHANTYNAGWRGHPNLRWGNEDHKPTHFAPPPSTSNQGTSLEDLVKTLATNTISFQQDMKQFQQEAR
        L+VT+CGVCGL+GH N+K       +   +RYDPH NTYN+GWR +PNLRWGN++ K TH   P ++S QGT+LED++K LATNT+SFQQ+MKQ      
Subjt:  LQVTQCGVCGLIGHVNNK-----NVIGGYKRYDPHANTYNAGWRGHPNLRWGNEDHKPTHFAPPPSTSNQGTSLEDLVKTLATNTISFQQDMKQFQQEAR

Query:  TRISNLGTQMTQLTTTVSKLEGKGKLPAQPNHANVSAISLQSGKVLNSSIDDIPMIKSNPPPLDEHSDVNNNKEKDTSPQPSQSKD
                QMTQLTTT SK++GKGKL AQP HANVS ISL+SGK+L++       + S P PL+  ++ +  ++ +T+P PS SK+
Subjt:  TRISNLGTQMTQLTTTVSKLEGKGKLPAQPNHANVSAISLQSGKVLNSSIDDIPMIKSNPPPLDEHSDVNNNKEKDTSPQPSQSKD

A0A5A7VQ60 Retrotransposon gag protein9.7e-4150.25Show/hide
Query:  TPIASLPSGS-LQVTQCGVCGLIGHVNNK-----NVIGGYKRYDPHANTYNAGWRGHPNLRWGNEDHKPTHFAPPPSTSNQGTSLEDLVKTLATNTISFQ
        T + S   G+ L+VT+CGVCGL+GH+N K       +   +RYDPH+NTYN+GWR +PNLRWGN++ K  H   P ++SNQGT+LED++K LATNT+SFQ
Subjt:  TPIASLPSGS-LQVTQCGVCGLIGHVNNK-----NVIGGYKRYDPHANTYNAGWRGHPNLRWGNEDHKPTHFAPPPSTSNQGTSLEDLVKTLATNTISFQ

Query:  QDMKQFQQEARTRISNLGTQMTQLTTTVSKLEGKGKLPAQPNHANVSAISLQSGKVLNSSIDDIPMIKSNPPPLDEHSDVNNNKEKDTSPQPSQSKD
        Q+MKQ              QMTQLTT +SK++GKGKLPAQ +HANVSAISL+SGK+L++       + S P PL+  ++ +  ++ +T+P PS SK+
Subjt:  QDMKQFQQEARTRISNLGTQMTQLTTTVSKLEGKGKLPAQPNHANVSAISLQSGKVLNSSIDDIPMIKSNPPPLDEHSDVNNNKEKDTSPQPSQSKD

A0A5D3BX36 Retrotransposon gag protein1.7e-4051.08Show/hide
Query:  LQVTQCGVCGLIGHVNNK--NVIGG---YKRYDPHANTYNAGWRGHPNLRWGNEDHKPTHFAPPPSTSNQGTSLEDLVKTLATNTISFQQDMKQFQQEAR
        L++T+CGVCGL+GH N+K   VIG     +RY+PH NTYN+GWR +PNLRWGN++ K  H   PP++S QGT+LED++K L TNT+SFQQ+MKQ      
Subjt:  LQVTQCGVCGLIGHVNNK--NVIGG---YKRYDPHANTYNAGWRGHPNLRWGNEDHKPTHFAPPPSTSNQGTSLEDLVKTLATNTISFQQDMKQFQQEAR

Query:  TRISNLGTQMTQLTTTVSKLEGKGKLPAQPNHANVSAISLQSGKVLNSSIDDIPMIKSNPPPLDEHSDVNNNKEKDTSPQPSQSKD
                QMTQ TT +SK++GKGKLPAQ +HANVSAISL+SGK+L+S    +  + S P PL+  ++ +  ++ +T+P PS S++
Subjt:  TRISNLGTQMTQLTTTVSKLEGKGKLPAQPNHANVSAISLQSGKVLNSSIDDIPMIKSNPPPLDEHSDVNNNKEKDTSPQPSQSKD

A0A5D3CQR9 Retrotransposon gag protein4.8e-4051.61Show/hide
Query:  LQVTQCGVCGLIGHVNNK-----NVIGGYKRYDPHANTYNAGWRGHPNLRWGNEDHKPTHFAPPPSTSNQGTSLEDLVKTLATNTISFQQDMKQFQQEAR
        L+VT+CGVCGL+GH N+K       +   +RYDPH NTYN+GWR +PNLRWGN++ K TH   P ++S QGT+LED++K LATNT+SFQQ+MKQ      
Subjt:  LQVTQCGVCGLIGHVNNK-----NVIGGYKRYDPHANTYNAGWRGHPNLRWGNEDHKPTHFAPPPSTSNQGTSLEDLVKTLATNTISFQQDMKQFQQEAR

Query:  TRISNLGTQMTQLTTTVSKLEGKGKLPAQPNHANVSAISLQSGKVLNSSIDDIPMIKSNPPPLDEHSDVNNNKEKDTSPQPSQSKD
                QMTQLTTT SK++GKGKL AQP HANVS ISL+SGK+L++       + S P PL+  ++ +  ++ +T+P PS SK+
Subjt:  TRISNLGTQMTQLTTTVSKLEGKGKLPAQPNHANVSAISLQSGKVLNSSIDDIPMIKSNPPPLDEHSDVNNNKEKDTSPQPSQSKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAAGGTCATTTCCAGAAGGAATCTGAGCAGGGTACACTTTCTAGAGGATCCAGAATGTGTCCTATGGAATTCAGAGCTAAAACTTTGAGGGGTGCATGGCATGC
CCAACGCAGGGTAGAGCGTTGGGCTATGTGCGTGATCGAATGCCAAGCGCGCAGGCCGTGGCGTGTGTGCGCACGAAGTGTTGATCATGTGCGCGAGGTTGTCATGCAAC
CTGGGCTTGCGATGTATGGAACGTGGACCCAATTTTCGTGCTTGACTCCAATTGCCAGTTTGCCAAGTGGCTCTCTTCAAGTCACCCAATGTGGGGTGTGCGGTTTGATC
GGTCATGTAAACAACAAAAACGTCATAGGAGGATATAAGAGGTATGACCCTCACGCAAACACATACAACGCGGGATGGAGAGGTCATCCTAACTTGAGATGGGGAAATGA
AGATCACAAGCCCACTCACTTCGCCCCTCCTCCTTCAACATCTAATCAAGGTACATCTTTAGAAGATTTGGTAAAAACTTTAGCTACTAACACTATTTCTTTTCAACAAG
ACATGAAGCAATTTCAACAAGAGGCAAGAACGAGGATTTCAAATTTAGGAACTCAAATGACCCAATTGACAACGACCGTGAGCAAATTAGAAGGGAAAGGTAAGCTTCCG
GCTCAACCCAACCATGCAAACGTAAGTGCAATTTCGTTGCAAAGTGGTAAGGTTCTTAACTCTTCTATTGATGATATCCCAATGATTAAATCCAACCCTCCCCCTCTTGA
TGAACATTCTGATGTTAACAATAATAAGGAAAAAGATACTTCTCCACAACCATCACAATCTAAGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAAGGTCATTTCCAGAAGGAATCTGAGCAGGGTACACTTTCTAGAGGATCCAGAATGTGTCCTATGGAATTCAGAGCTAAAACTTTGAGGGGTGCATGGCATGC
CCAACGCAGGGTAGAGCGTTGGGCTATGTGCGTGATCGAATGCCAAGCGCGCAGGCCGTGGCGTGTGTGCGCACGAAGTGTTGATCATGTGCGCGAGGTTGTCATGCAAC
CTGGGCTTGCGATGTATGGAACGTGGACCCAATTTTCGTGCTTGACTCCAATTGCCAGTTTGCCAAGTGGCTCTCTTCAAGTCACCCAATGTGGGGTGTGCGGTTTGATC
GGTCATGTAAACAACAAAAACGTCATAGGAGGATATAAGAGGTATGACCCTCACGCAAACACATACAACGCGGGATGGAGAGGTCATCCTAACTTGAGATGGGGAAATGA
AGATCACAAGCCCACTCACTTCGCCCCTCCTCCTTCAACATCTAATCAAGGTACATCTTTAGAAGATTTGGTAAAAACTTTAGCTACTAACACTATTTCTTTTCAACAAG
ACATGAAGCAATTTCAACAAGAGGCAAGAACGAGGATTTCAAATTTAGGAACTCAAATGACCCAATTGACAACGACCGTGAGCAAATTAGAAGGGAAAGGTAAGCTTCCG
GCTCAACCCAACCATGCAAACGTAAGTGCAATTTCGTTGCAAAGTGGTAAGGTTCTTAACTCTTCTATTGATGATATCCCAATGATTAAATCCAACCCTCCCCCTCTTGA
TGAACATTCTGATGTTAACAATAATAAGGAAAAAGATACTTCTCCACAACCATCACAATCTAAGGATTGA
Protein sequenceShow/hide protein sequence
MEKGHFQKESEQGTLSRGSRMCPMEFRAKTLRGAWHAQRRVERWAMCVIECQARRPWRVCARSVDHVREVVMQPGLAMYGTWTQFSCLTPIASLPSGSLQVTQCGVCGLI
GHVNNKNVIGGYKRYDPHANTYNAGWRGHPNLRWGNEDHKPTHFAPPPSTSNQGTSLEDLVKTLATNTISFQQDMKQFQQEARTRISNLGTQMTQLTTTVSKLEGKGKLP
AQPNHANVSAISLQSGKVLNSSIDDIPMIKSNPPPLDEHSDVNNNKEKDTSPQPSQSKD