CuGenDBv2

Gene ID	PI0028767
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr09:7805590..7805820
RNA-Seq Expression	PI0028767
Synteny	PI0028767
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035412.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]

4.3e-22

82.86

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Query:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKKL
        HLLRT   L ST+VIDVEEMVAMFLH+LAHDVKNR+IQREF+RS ETISRHF++VLLAI+RLHDELLKKL
Subjt:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKKL

KAA0035627.1 retrotransposon protein [Cucumis melo var. makuwa]

5.7e-22

81.16

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Query:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKK
        HLLRT   L STKV+DVEEMVAMFLH+LAHDVKNR+IQREF+RS ETISRHFN+VLLA++RLH+ELLKK
Subjt:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKK

KAA0054554.1 retrotransposon protein [Cucumis melo var. makuwa]

4.3e-22

81.16

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Query:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKK
        HLLRT   L STKV+DVEEMVAMFLH+LAHDVKNR+IQREF+RS ETISRHFN+VLLA++RLH+ELLKK
Subjt:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKK

KAA0061842.1 retrotransposon protein [Cucumis melo var. makuwa]

4.3e-22

81.16

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Query:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKK
        HLLRT   L STKV+DVEEMVAMFLH+LAHDVKNR+IQREF+RS ETISRHFN+VLLA++RLH+ELLKK
Subjt:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKK

XP_008466673.1 PREDICTED: uncharacterized protein LOC103504027 [Cucumis melo]

5.1e-23

85.51

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Query:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKK
        HLLRTT  L  TKVIDVEEMVAMFLH+LAHDVKNR+IQREFVRS ET+SRHFN+VLLA+LRLHDELLKK
Subjt:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CRU3 uncharacterized protein LOC103504027

2.5e-23

85.51

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Query:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKK
        HLLRTT  L  TKVIDVEEMVAMFLH+LAHDVKNR+IQREFVRS ET+SRHFN+VLLA+LRLHDELLKK
Subjt:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKK

A0A5A7SVX3 Putative nuclease HARBI1

2.1e-22

82.86

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Query:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKKL
        HLLRT   L ST+VIDVEEMVAMFLH+LAHDVKNR+IQREF+RS ETISRHF++VLLAI+RLHDELLKKL
Subjt:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKKL

A0A5A7V0W7 Retrotransposon protein

2.1e-22

81.16

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Query:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKK
        HLLRT   L STKV+DVEEMVAMFLH+LAHDVKNR+IQREF+RS ETISRHFN+VLLA++RLH+ELLKK
Subjt:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKK

A0A5D3CQK6 Putative nuclease HARBI1

2.5e-23

85.51

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Query:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKK
        HLLRTT  L  TKVIDVEEMVAMFLH+LAHDVKNR+IQREFVRS ET+SRHFN+VLLA+LRLHDELLKK
Subjt:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKK

A0A5D3D9Z3 Retrotransposon protein

2.1e-22

81.16

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Query:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKK
        HLLRT   L STKV+DVEEMVAMFLH+LAHDVKNR+IQREF+RS ETISRHFN+VLLA++RLH+ELLKK
Subjt:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G43722.1 unknown protein

1.5e-04

39.66

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Query:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLA
        ++L+T  +L+ T  I +EE VAMFL +  H+   R +   F R+ ET+ R F  VL A
Subjt:  HLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLA

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

4.2e-07

38.81

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Query:  LLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLK
        LL+T   L  T  I +E  +A+FL ++ H+++ R +Q  F  S ETISRHFN VL A++ +  +  +
Subjt:  LLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLK

Sequences

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CDS sequence

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ATGTTTTGTCATTCTATTCATCTACTTAGGACGACCAATGAATTAGAGTCAACGAAAGTCATAGATGTGGAGGAGATGGTTGCCATGTTCCTCCATGTACTAGCACATGA
TGTGAAGAATCGAATAATTCAAAGGGAGTTTGTGCGGTCCGACGAGACAATTTCTAGACATTTCAACATTGTCCTCTTGGCAATTTTGCGATTGCATGACGAGTTGTTGA
AAAAGCTGTAG

mRNA sequence

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Protein sequence

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MFCHSIHLLRTTNELESTKVIDVEEMVAMFLHVLAHDVKNRIIQREFVRSDETISRHFNIVLLAILRLHDELLKKL

PI0028767 (gene) of Melon (PI 482460) v1 genome