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PI0028771 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028771
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionSWIM-type domain-containing protein
Genome locationchr11:18812062..18813456
RNA-Seq ExpressionPI0028771
SyntenyPI0028771
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK03234.1 uncharacterized protein E5676_scaffold298G00470 [Cucumis melo var. makuwa]1.2e-3752.41Show/hide
Query:  KLLLTSR-YKVDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWRVEDDVM
        KL+  SR + V+ +S  E++V+D  + F+VKLN  SCSC  WD+EEIPC HAL+V+R LNL+ Y++VS++YY   LSATY G ++P+G H DW V +   
Subjt:  KLLLTSR-YKVDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWRVEDDVM

Query:  KALPPIFKRQARRPRKQRIPSVGEFNSLSRCSNCNCKGHNSRTCK
          LPP+F+R A RPRK+RIPS+GE +  S+CS C   GHN RTC+
Subjt:  KALPPIFKRQARRPRKQRIPSVGEFNSLSRCSNCNCKGHNSRTCK

TYK07957.1 hypothetical protein E5676_scaffold265G00780 [Cucumis melo var. makuwa]9.1e-5981.75Show/hide
Query:  KVDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWRVEDDVMKALPPIFKR
        +VD IS TEY+V + NQQFIVKLN+  CSCRVWDVEEIPC HALVVLRMLNLDTYSYVSEFYYRETLS TYNGCIQPVG+H DWRV D VMK LPP+FKR
Subjt:  KVDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWRVEDDVMKALPPIFKR

Query:  QARRPRKQRIPSVGEFNSLSRCSNCNCKGHNSRTCKQ
        QA RP KQRIPSV EFNS ++CSNCN KGHNSRTCKQ
Subjt:  QARRPRKQRIPSVGEFNSLSRCSNCNCKGHNSRTCKQ

XP_011654398.1 uncharacterized protein LOC105435382 [Cucumis sativus]7.3e-4061.03Show/hide
Query:  VDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWRVEDDVMKALPPIFKRQ
        V  I+  EY V+  ++Q IVKLNLGSCSCRVWD  EIPC HALVVL MLNL++YSYVS++Y+ +TL +TY G + P+G H +WR+ +D + ALPPIFKR 
Subjt:  VDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWRVEDDVMKALPPIFKRQ

Query:  ARRPRKQRIPSVGEFNSLS-RCSNCNCKGHNSRTCK
          RP+  R+PS+GE NS S RCS+C+ KGHNSRTCK
Subjt:  ARRPRKQRIPSVGEFNSLS-RCSNCNCKGHNSRTCK

XP_038896605.1 uncharacterized protein LOC120084863 [Benincasa hispida]1.7e-4463.77Show/hide
Query:  YKVDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWRVEDDVMKALPPIFK
        + +  I I EY V+D ++QF+VKLN  SCS +VWD EEIPC H LVVLR+LN+D YSY+S +YY   LS TY GC++PVG H +WRV DD ++ALPPIFK
Subjt:  YKVDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWRVEDDVMKALPPIFK

Query:  RQARRPRKQRIPSVGEFNSLS-RCSNCNCKGHNSRTCK
          ARRP+KQRIPSVGE  S S RCS C+ KGHNSRTCK
Subjt:  RQARRPRKQRIPSVGEFNSLS-RCSNCNCKGHNSRTCK

XP_038904248.1 uncharacterized protein LOC120090597 [Benincasa hispida]2.4e-4363.04Show/hide
Query:  YKVDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWRVEDDVMKALPPIFK
        + V  I   +Y V+D ++QF+VKLNLGSCSCRVWD EEI C HALV+L +LN+D YSYVS +YY  TLS TY GC++P+G H +WRV DD ++ALPPIFK
Subjt:  YKVDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWRVEDDVMKALPPIFK

Query:  RQARRPRKQRIPSVGEFNSLS-RCSNCNCKGHNSRTCK
        R A  P+KQRIPS  E  S S RCS C+ KGHNSRTCK
Subjt:  RQARRPRKQRIPSVGEFNSLS-RCSNCNCKGHNSRTCK

TrEMBL top hitse value%identityAlignment
A0A5A7TGH6 SWIM-type domain-containing protein6.2e-3751.72Show/hide
Query:  KLLLTSR-YKVDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWRVEDDVM
        KL+  SR + V+ +S  E++V+DE + F+VKLN  SCSC  WD+E+IPC HAL+V+R LNL+ Y++VS +YY   L ATY G ++P+G H DW V +   
Subjt:  KLLLTSR-YKVDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWRVEDDVM

Query:  KALPPIFKRQARRPRKQRIPSVGEFNSLSRCSNCNCKGHNSRTCK
          LPP+F+R A RPRK+RIPS GE +  S+CS C   GHN RTC+
Subjt:  KALPPIFKRQARRPRKQRIPSVGEFNSLSRCSNCNCKGHNSRTCK

A0A5A7TVL2 ZnF_PMZ domain-containing protein1.4e-3652.08Show/hide
Query:  KLLLTSR-YKVDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWRVEDDVM
        KL+  SR + V+ +S  E++V+D  + F+VKLN  SCSC  WD+EEIPC  AL+V+R LNL+ Y++VS++YY   LSATY G ++P+G H DW V +   
Subjt:  KLLLTSR-YKVDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWRVEDDVM

Query:  KALPPIFKRQARRPRKQRIPSVGEFNSLSRCSNCNCKGHNSRTC
          LPP+F+R A RPRK+RIPS+GE +  S+CS C   GHN RTC
Subjt:  KALPPIFKRQARRPRKQRIPSVGEFNSLSRCSNCNCKGHNSRTC

A0A5D3BD68 SWIM-type domain-containing protein6.2e-3751.72Show/hide
Query:  KLLLTSR-YKVDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWRVEDDVM
        KL+  SR + V+ +S  E++V+D  + F+VKLN  SCSC  WD+EEIPC HAL+V+R LNL+ Y++VS++YY   LSATY G ++P+G H DW V     
Subjt:  KLLLTSR-YKVDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWRVEDDVM

Query:  KALPPIFKRQARRPRKQRIPSVGEFNSLSRCSNCNCKGHNSRTCK
          LPP+F+R A RPRK+RIPS+GE +  S+CS C    HN RTC+
Subjt:  KALPPIFKRQARRPRKQRIPSVGEFNSLSRCSNCNCKGHNSRTCK

A0A5D3BVP4 SWIM-type domain-containing protein5.6e-3852.41Show/hide
Query:  KLLLTSR-YKVDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWRVEDDVM
        KL+  SR + V+ +S  E++V+D  + F+VKLN  SCSC  WD+EEIPC HAL+V+R LNL+ Y++VS++YY   LSATY G ++P+G H DW V +   
Subjt:  KLLLTSR-YKVDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWRVEDDVM

Query:  KALPPIFKRQARRPRKQRIPSVGEFNSLSRCSNCNCKGHNSRTCK
          LPP+F+R A RPRK+RIPS+GE +  S+CS C   GHN RTC+
Subjt:  KALPPIFKRQARRPRKQRIPSVGEFNSLSRCSNCNCKGHNSRTCK

A0A5D3C7L7 Uncharacterized protein4.4e-5981.75Show/hide
Query:  KVDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWRVEDDVMKALPPIFKR
        +VD IS TEY+V + NQQFIVKLN+  CSCRVWDVEEIPC HALVVLRMLNLDTYSYVSEFYYRETLS TYNGCIQPVG+H DWRV D VMK LPP+FKR
Subjt:  KVDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWRVEDDVMKALPPIFKR

Query:  QARRPRKQRIPSVGEFNSLSRCSNCNCKGHNSRTCKQ
        QA RP KQRIPSV EFNS ++CSNCN KGHNSRTCKQ
Subjt:  QARRPRKQRIPSVGEFNSLSRCSNCNCKGHNSRTCKQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G64260.1 MuDR family transposase3.2e-0931.53Show/hide
Query:  MVSKINYKLLLTSRYKVDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWR
        M   I Y +    R   DS  ++E     E +++IV+LN+ +C+CR +   + PC HAL V   L ++   YV E Y  E    TY     PV     W 
Subjt:  MVSKINYKLLLTSRYKVDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWR

Query:  VEDDVMKALPP
         +  V    PP
Subjt:  VEDDVMKALPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAGTAAGATAAATTACAAATTACTTTTGACAAGCCGATACAAGGTCGATTCAATTAGTATCACTGAATACAAAGTAATAGATGAAAATCAACAGTTCATTGTCAA
GTTAAACTTAGGATCTTGTAGCTGTCGAGTATGGGATGTTGAGGAAATTCCATGTCCACATGCTCTTGTTGTTCTACGAATGCTTAATTTAGATACGTATTCTTATGTAT
CTGAGTTCTATTATAGAGAAACGCTATCAGCAACATACAATGGTTGTATTCAACCTGTTGGGACTCATTTAGATTGGAGAGTTGAAGATGATGTCATGAAAGCATTACCT
CCAATCTTTAAACGTCAAGCTAGAAGACCAAGAAAACAAAGAATTCCATCTGTAGGCGAATTTAATAGTTTATCAAGATGTTCCAATTGTAACTGTAAAGGACACAATAG
TAGGACTTGCAAGCAAAGTGTGAAAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTAAGTAAGATAAATTACAAATTACTTTTGACAAGCCGATACAAGGTCGATTCAATTAGTATCACTGAATACAAAGTAATAGATGAAAATCAACAGTTCATTGTCAA
GTTAAACTTAGGATCTTGTAGCTGTCGAGTATGGGATGTTGAGGAAATTCCATGTCCACATGCTCTTGTTGTTCTACGAATGCTTAATTTAGATACGTATTCTTATGTAT
CTGAGTTCTATTATAGAGAAACGCTATCAGCAACATACAATGGTTGTATTCAACCTGTTGGGACTCATTTAGATTGGAGAGTTGAAGATGATGTCATGAAAGCATTACCT
CCAATCTTTAAACGTCAAGCTAGAAGACCAAGAAAACAAAGAATTCCATCTGTAGGCGAATTTAATAGTTTATCAAGATGTTCCAATTGTAACTGTAAAGGACACAATAG
TAGGACTTGCAAGCAAAGTGTGAAAAATTAA
Protein sequenceShow/hide protein sequence
MVSKINYKLLLTSRYKVDSISITEYKVIDENQQFIVKLNLGSCSCRVWDVEEIPCPHALVVLRMLNLDTYSYVSEFYYRETLSATYNGCIQPVGTHLDWRVEDDVMKALP
PIFKRQARRPRKQRIPSVGEFNSLSRCSNCNCKGHNSRTCKQSVKN