; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0028779 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028779
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr06:17681771..17683160
RNA-Seq ExpressionPI0028779
SyntenyPI0028779
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]9.3e-7375.96Show/hide
Query:  MTTLLTSFVQGGSVKISKCGVCGLVGHPNDKCPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNQRPSQATSSSSNQGTNLEDLVKALATNTLSFQ
        MTTLLTSFVQG  +K++KCGVC LVGHPNDKCP++IE+ N++RKYDP+ NTYNSGWRDNPNLRWGNDNQ+ +QA  +SSNQGTNLED++KALATNTLSFQ
Subjt:  MTTLLTSFVQGGSVKISKCGVCGLVGHPNDKCPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNQRPSQATSSSSNQGTNLEDLVKALATNTLSFQ

Query:  QEMKQQITHLTIAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKVTSNPILLENNSESKEEKVETNVLPSNSNKE
        QEMKQQ+T LT AISK++GKGKLPAQPDYANVSAISLRSGKIL+TP+++EKKVTS  + L + +ESKEEKVETN+ PSNS  +
Subjt:  QEMKQQITHLTIAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKVTSNPILLENNSESKEEKVETNVLPSNSNKE

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.0e-7173.77Show/hide
Query:  MTTLLTSFVQGGSVKISKCGVCGLVGHPNDKCPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNQRPSQATSSSSNQGTNLEDLVKALATNTLSFQ
        MTTLLTSFVQG  +K++KCGVCGLVGHPNDKCP++IE+ N++RKYDPH NTYNSGWRDNPNLRWGNDNQ+ +QA S+SSNQGTNLED++KALATNTLSFQ
Subjt:  MTTLLTSFVQGGSVKISKCGVCGLVGHPNDKCPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNQRPSQATSSSSNQGTNLEDLVKALATNTLSFQ

Query:  QEMKQQITHLTIAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKVTSNPILLENNSESKEEKVETNVLPSNSNKE
        QEMKQQ+T LT AISK++GKGKL AQ +YANVSA+SLRSGKIL+TP+++EKK TS P+ L   +E KEEK+ETN  P NS  +
Subjt:  QEMKQQITHLTIAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKVTSNPILLENNSESKEEKVETNVLPSNSNKE

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.6e-7073.22Show/hide
Query:  MTTLLTSFVQGGSVKISKCGVCGLVGHPNDKCPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNQRPSQATSSSSNQGTNLEDLVKALATNTLSFQ
        MT LLTSFVQG  +K++KCGVCGLVGHPNDKCP++IE+ N+++KYDPH NTYNSGWRDNPNLRWGNDNQ+ +QA  +SSNQGTNLED++KALATNTLSFQ
Subjt:  MTTLLTSFVQGGSVKISKCGVCGLVGHPNDKCPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNQRPSQATSSSSNQGTNLEDLVKALATNTLSFQ

Query:  QEMKQQITHLTIAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKVTSNPILLENNSESKEEKVETNVLPSNSNKE
        QEMKQQ+T LT  ISK++GKGKL AQPD+ANVS ISLRS KIL+TP+++EKKVTS P+ L + +ESKEEK ETN  PSNS  +
Subjt:  QEMKQQITHLTIAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKVTSNPILLENNSESKEEKVETNVLPSNSNKE

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.0e-7275.82Show/hide
Query:  TTLLTSFVQGGSVKISKCGVCGLVGHPNDKCPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNQRPSQATSSSSNQGTNLEDLVKALATNTLSFQQ
        TTLLTSFVQG  +K++KCGVCGLVGH N+KCP++IE+ N++R+YDPHSNTYNSGWRDNPNLRWGNDNQ+ +QA S+SSNQGTNLED++KALATNTLSFQQ
Subjt:  TTLLTSFVQGGSVKISKCGVCGLVGHPNDKCPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNQRPSQATSSSSNQGTNLEDLVKALATNTLSFQQ

Query:  EMKQQITHLTIAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKVTSNPILLENNSESKEEKVETNVLPSNSNKE
        EMKQQ+T LT AISK++GKGKLPAQ D+ANVSAISLRSGKIL+TP+++EKKVTS P+ L + +ESKEEKVETN  PSNS  +
Subjt:  EMKQQITHLTIAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKVTSNPILLENNSESKEEKVETNVLPSNSNKE

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]9.6e-7073.22Show/hide
Query:  MTTLLTSFVQGGSVKISKCGVCGLVGHPNDKCPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNQRPSQATSSSSNQGTNLEDLVKALATNTLSFQ
        MT LLTSFVQG  +K++KCGVCGLVGHPNDKCP++IE+ N+++KYDPH NTYNSGWRDNPNLRWGNDNQ+ +QA  +SSNQGTNLED++KALATNTLSFQ
Subjt:  MTTLLTSFVQGGSVKISKCGVCGLVGHPNDKCPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNQRPSQATSSSSNQGTNLEDLVKALATNTLSFQ

Query:  QEMKQQITHLTIAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKVTSNPILLENNSESKEEKVETNVLPSNSNKE
        QEMKQQ+T LT  ISK++GKGKL AQPD+ANVS ISLRS KIL+TP+++EKKVTS P+ L + +ESKEEK ETN  PSNS  +
Subjt:  QEMKQQITHLTIAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKVTSNPILLENNSESKEEKVETNVLPSNSNKE

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919104.6e-7073.22Show/hide
Query:  MTTLLTSFVQGGSVKISKCGVCGLVGHPNDKCPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNQRPSQATSSSSNQGTNLEDLVKALATNTLSFQ
        MT LLTSFVQG  +K++KCGVCGLVGHPNDKCP++IE+ N+++KYDPH NTYNSGWRDNPNLRWGNDNQ+ +QA  +SSNQGTNLED++KALATNTLSFQ
Subjt:  MTTLLTSFVQGGSVKISKCGVCGLVGHPNDKCPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNQRPSQATSSSSNQGTNLEDLVKALATNTLSFQ

Query:  QEMKQQITHLTIAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKVTSNPILLENNSESKEEKVETNVLPSNSNKE
        QEMKQQ+T LT  ISK++GKGKL AQPD+ANVS ISLRS KIL+TP+++EKKVTS P+ L + +ESKEEK ETN  PSNS  +
Subjt:  QEMKQQITHLTIAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKVTSNPILLENNSESKEEKVETNVLPSNSNKE

A0A5A7VQ60 Retrotransposon gag protein2.9e-7275.82Show/hide
Query:  TTLLTSFVQGGSVKISKCGVCGLVGHPNDKCPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNQRPSQATSSSSNQGTNLEDLVKALATNTLSFQQ
        TTLLTSFVQG  +K++KCGVCGLVGH N+KCP++IE+ N++R+YDPHSNTYNSGWRDNPNLRWGNDNQ+ +QA S+SSNQGTNLED++KALATNTLSFQQ
Subjt:  TTLLTSFVQGGSVKISKCGVCGLVGHPNDKCPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNQRPSQATSSSSNQGTNLEDLVKALATNTLSFQQ

Query:  EMKQQITHLTIAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKVTSNPILLENNSESKEEKVETNVLPSNSNKE
        EMKQQ+T LT AISK++GKGKLPAQ D+ANVSAISLRSGKIL+TP+++EKKVTS P+ L + +ESKEEKVETN  PSNS  +
Subjt:  EMKQQITHLTIAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKVTSNPILLENNSESKEEKVETNVLPSNSNKE

A0A5D3CRR8 Retrotransposon gag protein1.4e-7173.77Show/hide
Query:  MTTLLTSFVQGGSVKISKCGVCGLVGHPNDKCPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNQRPSQATSSSSNQGTNLEDLVKALATNTLSFQ
        MTTLLTSFVQG  +K++KCGVCGLVGHPNDKCP++IE+ N++RKYDPH NTYNSGWRDNPNLRWGNDNQ+ +QA S+SSNQGTNLED++KALATNTLSFQ
Subjt:  MTTLLTSFVQGGSVKISKCGVCGLVGHPNDKCPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNQRPSQATSSSSNQGTNLEDLVKALATNTLSFQ

Query:  QEMKQQITHLTIAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKVTSNPILLENNSESKEEKVETNVLPSNSNKE
        QEMKQQ+T LT AISK++GKGKL AQ +YANVSA+SLRSGKIL+TP+++EKK TS P+ L   +E KEEK+ETN  P NS  +
Subjt:  QEMKQQITHLTIAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKVTSNPILLENNSESKEEKVETNVLPSNSNKE

A0A5D3DCG3 Retrotransposon gag protein4.6e-7073.22Show/hide
Query:  MTTLLTSFVQGGSVKISKCGVCGLVGHPNDKCPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNQRPSQATSSSSNQGTNLEDLVKALATNTLSFQ
        MT LLTSFVQG  +K++KCGVCGLVGHPNDKCP++IE+ N+++KYDPH NTYNSGWRDNPNLRWGNDNQ+ +QA  +SSNQGTNLED++KALATNTLSFQ
Subjt:  MTTLLTSFVQGGSVKISKCGVCGLVGHPNDKCPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNQRPSQATSSSSNQGTNLEDLVKALATNTLSFQ

Query:  QEMKQQITHLTIAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKVTSNPILLENNSESKEEKVETNVLPSNSNKE
        QEMKQQ+T LT  ISK++GKGKL AQPD+ANVS ISLRS KIL+TP+++EKKVTS P+ L + +ESKEEK ETN  PSNS  +
Subjt:  QEMKQQITHLTIAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKVTSNPILLENNSESKEEKVETNVLPSNSNKE

E5GBZ4 Retrotransposon gag protein4.5e-7375.96Show/hide
Query:  MTTLLTSFVQGGSVKISKCGVCGLVGHPNDKCPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNQRPSQATSSSSNQGTNLEDLVKALATNTLSFQ
        MTTLLTSFVQG  +K++KCGVC LVGHPNDKCP++IE+ N++RKYDP+ NTYNSGWRDNPNLRWGNDNQ+ +QA  +SSNQGTNLED++KALATNTLSFQ
Subjt:  MTTLLTSFVQGGSVKISKCGVCGLVGHPNDKCPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNQRPSQATSSSSNQGTNLEDLVKALATNTLSFQ

Query:  QEMKQQITHLTIAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKVTSNPILLENNSESKEEKVETNVLPSNSNKE
        QEMKQQ+T LT AISK++GKGKLPAQPDYANVSAISLRSGKIL+TP+++EKKVTS  + L + +ESKEEKVETN+ PSNS  +
Subjt:  QEMKQQITHLTIAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKVTSNPILLENNSESKEEKVETNVLPSNSNKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTTTACTCACTTCTTTTGTGCAAGGTGGCTCTGTAAAAATTTCTAAGTGTGGGGTTTGCGGCCTAGTTGGACATCCAAATGACAAGTGCCCAGACTTAATTGA
AGAAGCAAATGTCATTCGTAAGTACGATCCCCATAGTAATACGTACAATTCTGGTTGGAGAGACAACCCAAATTTAAGGTGGGGAAATGACAACCAAAGGCCTTCACAAG
CAACTTCTTCTTCCTCTAACCAGGGTACAAATCTTGAAGATTTAGTAAAAGCACTAGCCACTAATACTCTCTCTTTCCAACAAGAAATGAAGCAACAAATTACTCATCTC
ACTATCGCTATTAGTAAGTTGGAAGGAAAAGGTAAACTTCCGGCCCAACCGGACTATGCAAATGTGAGTGCCATCTCACTTAGAAGTGGTAAGATTCTTGAAACCCCTTC
AAGTGAAGAAAAAAAGGTAACTTCCAACCCTATCCTTCTTGAAAATAATAGTGAGTCTAAGGAAGAAAAAGTTGAAACAAATGTTTTACCATCCAATTCTAATAAAGAAT
TGCATGATGAAGTTAATAAGTTGTTGATTGATAAATTATATCTTATATCTTTTGATTTTGATTTTATGAAGCTCTCTGACTCTTATTATATGGTGAATGGGCGGATGAAG
GATGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGACTACTTTACTCACTTCTTTTGTGCAAGGTGGCTCTGTAAAAATTTCTAAGTGTGGGGTTTGCGGCCTAGTTGGACATCCAAATGACAAGTGCCCAGACTTAATTGA
AGAAGCAAATGTCATTCGTAAGTACGATCCCCATAGTAATACGTACAATTCTGGTTGGAGAGACAACCCAAATTTAAGGTGGGGAAATGACAACCAAAGGCCTTCACAAG
CAACTTCTTCTTCCTCTAACCAGGGTACAAATCTTGAAGATTTAGTAAAAGCACTAGCCACTAATACTCTCTCTTTCCAACAAGAAATGAAGCAACAAATTACTCATCTC
ACTATCGCTATTAGTAAGTTGGAAGGAAAAGGTAAACTTCCGGCCCAACCGGACTATGCAAATGTGAGTGCCATCTCACTTAGAAGTGGTAAGATTCTTGAAACCCCTTC
AAGTGAAGAAAAAAAGGTAACTTCCAACCCTATCCTTCTTGAAAATAATAGTGAGTCTAAGGAAGAAAAAGTTGAAACAAATGTTTTACCATCCAATTCTAATAAAGAAT
TGCATGATGAAGTTAATAAGTTGTTGATTGATAAATTATATCTTATATCTTTTGATTTTGATTTTATGAAGCTCTCTGACTCTTATTATATGGTGAATGGGCGGATGAAG
GATGAATGA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGSVKISKCGVCGLVGHPNDKCPDLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNQRPSQATSSSSNQGTNLEDLVKALATNTLSFQQEMKQQITHL
TIAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKVTSNPILLENNSESKEEKVETNVLPSNSNKELHDEVNKLLIDKLYLISFDFDFMKLSDSYYMVNGRMK
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