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PI0028781 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028781
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr01:13161268..13161807
RNA-Seq ExpressionPI0028781
SyntenyPI0028781
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043275.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.6e-5372.33Show/hide
Query:  QKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARK
        Q NHVAV+I  + R  A GSLIQFGSLEPVVIY  PE LQNND +T  SKEEEK ++DADEGWTLVTRRKK KQNFS+KES  YREY+R GKSQRRKARK
Subjt:  QKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARK

Query:  NARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP
        N RK  PI EE EELPR RQPITLKDFF ENF +EIV CH + TT+DDT PS+S E  P
Subjt:  NARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]1.7e-5364.61Show/hide
Query:  MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKES
        +++ +  D ++EL+LDDVAQ NH AV+I  + R  A GSLIQFGSLEPVVIYS PE LQNND R    KEEEK V++ +EGWTLVTRRKK KQ+FS+KES
Subjt:  MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKES

Query:  HLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP
          YR Y+ KGKSQRR  RKN RKF PI EE E L RPR+PI LKDFFP+NFP+EIVSCH  STTE+D  PS++ E+ P
Subjt:  HLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP

KAA0052314.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.3e-5261.8Show/hide
Query:  MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKES
        +++ +  D ++EL+LDDVAQ NH  ++I P+ R    GSLIQFGSLEPV+I+S PE LQNND +T   KEEEK V++ +EGWTLVTRRKK KQ+FS+K+S
Subjt:  MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKES

Query:  HLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP
          YR+Y+ KGKSQRR  RKN+RKF PI EE E L R R+PITLKDFFP+NFP+EIVSCH  STT DD  PS++ E+ P
Subjt:  HLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]1.7e-5364.61Show/hide
Query:  MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKES
        +++ +  D ++EL+LDDVAQ NH AV+I  + R  A GSLIQFGSLEPVVIYS PE LQNND R    KEEEK V++ +EGWTLVTRRKK KQ+FS+KES
Subjt:  MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKES

Query:  HLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP
          YR Y+ KGKSQRR  RKN RKF PI EE E L RPR+PI LKDFFP+NFP+EIVSCH  STTE+D  PS++ E+ P
Subjt:  HLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]1.7e-5364.61Show/hide
Query:  MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKES
        +++ +  D ++EL+LDDVAQ NH AV+I  + R  A GSLIQFGSLEPVVIYS PE LQNND R    KEEEK V++ +EGWTLVTRRKK KQ+FS+KES
Subjt:  MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKES

Query:  HLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP
          YR Y+ KGKSQRR  RKN RKF PI EE E L RPR+PI LKDFFP+NFP+EIVSCH  STTE+D  PS++ E+ P
Subjt:  HLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP

TrEMBL top hitse value%identityAlignment
A0A5A7TPD2 Ty3-gypsy retrotransposon protein4.2e-5372.33Show/hide
Query:  QKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARK
        Q NHVAV+I  + R  A GSLIQFGSLEPVVIY  PE LQNND +T  SKEEEK ++DADEGWTLVTRRKK KQNFS+KES  YREY+R GKSQRRKARK
Subjt:  QKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKGKSQRRKARK

Query:  NARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP
        N RK  PI EE EELPR RQPITLKDFF ENF +EIV CH + TT+DDT PS+S E  P
Subjt:  NARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP

A0A5A7TZU9 Ribonuclease H8.4e-5464.61Show/hide
Query:  MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKES
        +++ +  D ++EL+LDDVAQ NH AV+I  + R  A GSLIQFGSLEPVVIYS PE LQNND R    KEEEK V++ +EGWTLVTRRKK KQ+FS+KES
Subjt:  MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKES

Query:  HLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP
          YR Y+ KGKSQRR  RKN RKF PI EE E L RPR+PI LKDFFP+NFP+EIVSCH  STTE+D  PS++ E+ P
Subjt:  HLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP

A0A5D3BIH8 Uncharacterized protein8.4e-5464.61Show/hide
Query:  MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKES
        +++ +  D ++EL+LDDVAQ NH AV+I  + R  A GSLIQFGSLEPVVIYS PE LQNND R    KEEEK V++ +EGWTLVTRRKK KQ+FS+KES
Subjt:  MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKES

Query:  HLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP
          YR Y+ KGKSQRR  RKN RKF PI EE E L RPR+PI LKDFFP+NFP+EIVSCH  STTE+D  PS++ E+ P
Subjt:  HLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP

A0A5D3BR60 Ty3-gypsy retrotransposon protein2.1e-5261.8Show/hide
Query:  MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKES
        +++ +  D ++EL+LDDVAQ NH  ++I P+ R    GSLIQFGSLEPV+I+S PE LQNND +T   KEEEK V++ +EGWTLVTRRKK KQ+FS+K+S
Subjt:  MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKES

Query:  HLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP
          YR+Y+ KGKSQRR  RKN+RKF PI EE E L R R+PITLKDFFP+NFP+EIVSCH  STT DD  PS++ E+ P
Subjt:  HLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP

A0A5D3D1E5 Ribonuclease H8.4e-5464.61Show/hide
Query:  MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKES
        +++ +  D ++EL+LDDVAQ NH AV+I  + R  A GSLIQFGSLEPVVIYS PE LQNND R    KEEEK V++ +EGWTLVTRRKK KQ+FS+KES
Subjt:  MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKES

Query:  HLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP
          YR Y+ KGKSQRR  RKN RKF PI EE E L RPR+PI LKDFFP+NFP+EIVSCH  STTE+D  PS++ E+ P
Subjt:  HLYREYKRKGKSQRRKARKNARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTGTACATTTTGTTTGATCTTCAAGTTGAACTAGATCTCGATGATGTGGCACAAAAAAATCATGTTGCAGTAATGATTCATCCAGAGGGTCGATCACTTGCTAC
AGGGAGTCTAATCCAATTTGGATCTTTGGAGCCTGTTGTTATATATTCTTTACCGGAGGTCTTACAAAATAATGACATCCGAACTTTTTACTCAAAAGAAGAAGAAAAGA
ATGTGGAGGATGCTGACGAGGGATGGACGCTAGTAACGCGTCGAAAGAAGCATAAACAAAACTTTTCTAAAAAAGAATCCCATTTGTACCGAGAGTATAAAAGAAAGGGT
AAGTCTCAGAGAAGAAAAGCAAGGAAGAATGCAAGGAAGTTTCAACCAATCACTGAAGAAGGTGAGGAGCTTCCTCGACCACGACAACCAATAACTTTGAAAGACTTCTT
CCCTGAAAACTTTCCATTGGAAATCGTTTCGTGCCATGCTGTCAGTACAACTGAGGATGACACTTCTCCCTCAGATTCCGCAGAGCAACAACCAAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTGTACATTTTGTTTGATCTTCAAGTTGAACTAGATCTCGATGATGTGGCACAAAAAAATCATGTTGCAGTAATGATTCATCCAGAGGGTCGATCACTTGCTAC
AGGGAGTCTAATCCAATTTGGATCTTTGGAGCCTGTTGTTATATATTCTTTACCGGAGGTCTTACAAAATAATGACATCCGAACTTTTTACTCAAAAGAAGAAGAAAAGA
ATGTGGAGGATGCTGACGAGGGATGGACGCTAGTAACGCGTCGAAAGAAGCATAAACAAAACTTTTCTAAAAAAGAATCCCATTTGTACCGAGAGTATAAAAGAAAGGGT
AAGTCTCAGAGAAGAAAAGCAAGGAAGAATGCAAGGAAGTTTCAACCAATCACTGAAGAAGGTGAGGAGCTTCCTCGACCACGACAACCAATAACTTTGAAAGACTTCTT
CCCTGAAAACTTTCCATTGGAAATCGTTTCGTGCCATGCTGTCAGTACAACTGAGGATGACACTTCTCCCTCAGATTCCGCAGAGCAACAACCAAGCTAG
Protein sequenceShow/hide protein sequence
MVVYILFDLQVELDLDDVAQKNHVAVMIHPEGRSLATGSLIQFGSLEPVVIYSLPEVLQNNDIRTFYSKEEEKNVEDADEGWTLVTRRKKHKQNFSKKESHLYREYKRKG
KSQRRKARKNARKFQPITEEGEELPRPRQPITLKDFFPENFPLEIVSCHAVSTTEDDTSPSDSAEQQPS