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PI0028783 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028783
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr08:8767830..8768051
RNA-Seq ExpressionPI0028783
SyntenyPI0028783
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043083.1 uncharacterized protein E6C27_scaffold158G00210 [Cucumis melo var. makuwa]2.0e-1265.33Show/hide
Query:  MRVIQPQIHQEVVEDKI------------GGMTKDRLNVIIVINLVIISRNAKIKLKKMQIMLRKMKKVVIYHCF
        ++VIQ QIHQEV ED I            GGMTKDRLNVIIVIN  I+  NA+I+LKKMQIMLRKMKK VI HCF
Subjt:  MRVIQPQIHQEVVEDKI------------GGMTKDRLNVIIVINLVIISRNAKIKLKKMQIMLRKMKKVVIYHCF

KAA0058597.1 retrotransposon protein [Cucumis melo var. makuwa]9.5e-0760.66Show/hide
Query:  VIQPQIHQEVVEDKIGGMTKDRLNVIIVINLVIISRNAKIKLKKMQIMLRKMKKVVIYHCF
        +I+ Q+ ++ +   IGGMTKD LNVIIVINL II  NA+I+ KKMQ ML+ MKK VI HCF
Subjt:  VIQPQIHQEVVEDKIGGMTKDRLNVIIVINLVIISRNAKIKLKKMQIMLRKMKKVVIYHCF

XP_031737535.1 uncharacterized protein LOC105435097 [Cucumis sativus]3.4e-0486.11Show/hide
Query:  TKDRLNVIIVINLVIISRNAKIKLKKMQIMLRKMKK
        TKDRLNVIIVINL II  NA+I+LKKMQIMLRKMKK
Subjt:  TKDRLNVIIVINLVIISRNAKIKLKKMQIMLRKMKK

TrEMBL top hitse value%identityAlignment
A0A5A7TIB1 Uncharacterized protein9.6e-1365.33Show/hide
Query:  MRVIQPQIHQEVVEDKI------------GGMTKDRLNVIIVINLVIISRNAKIKLKKMQIMLRKMKKVVIYHCF
        ++VIQ QIHQEV ED I            GGMTKDRLNVIIVIN  I+  NA+I+LKKMQIMLRKMKK VI HCF
Subjt:  MRVIQPQIHQEVVEDKI------------GGMTKDRLNVIIVINLVIISRNAKIKLKKMQIMLRKMKKVVIYHCF

A0A5A7UV40 Retrotransposon protein4.6e-0760.66Show/hide
Query:  VIQPQIHQEVVEDKIGGMTKDRLNVIIVINLVIISRNAKIKLKKMQIMLRKMKKVVIYHCF
        +I+ Q+ ++ +   IGGMTKD LNVIIVINL II  NA+I+ KKMQ ML+ MKK VI HCF
Subjt:  VIQPQIHQEVVEDKIGGMTKDRLNVIIVINLVIISRNAKIKLKKMQIMLRKMKKVVIYHCF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGTAATTCAACCTCAAATTCATCAAGAGGTTGTGGAAGATAAAATTGGAGGTATGACAAAAGACAGGTTGAATGTTATAATTGTCATAAATTTGGTCATTATTTC
TAGAAATGCAAAAATAAAGTTGAAGAAAATGCAAATTATGCTGAGAAAGATGAAGAAAGTAGTGATTTATCATTGCTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGTAATTCAACCTCAAATTCATCAAGAGGTTGTGGAAGATAAAATTGGAGGTATGACAAAAGACAGGTTGAATGTTATAATTGTCATAAATTTGGTCATTATTTC
TAGAAATGCAAAAATAAAGTTGAAGAAAATGCAAATTATGCTGAGAAAGATGAAGAAAGTAGTGATTTATCATTGCTTCTAG
Protein sequenceShow/hide protein sequence
MRVIQPQIHQEVVEDKIGGMTKDRLNVIIVINLVIISRNAKIKLKKMQIMLRKMKKVVIYHCF