; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0028801 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028801
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr05:12640667..12641660
RNA-Seq ExpressionPI0028801
SyntenyPI0028801
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048191.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-8272.4Show/hide
Query:  MASTNSKVTKHRWTTIEDDALVECLRQLVEEGGLRADNGTFKPGYLVQVQKLMTDKIPGSNIQ-----------------GHPNARGLLNKPFPYFYDLE
        M STN K T+HRWTTIED+ALVECL QL+EEGG R DNGTFK  YLVQ+QKLM +KI GSNIQ                 GHPN R LLNKPFPYFYDLE
Subjt:  MASTNSKVTKHRWTTIEDDALVECLRQLVEEGGLRADNGTFKPGYLVQVQKLMTDKIPGSNIQ-----------------GHPNARGLLNKPFPYFYDLE

Query:  IVFGRDRATGGRCKTCVEMGSQTEKDIEEDDMDINLEDFDIPNPYGLEPPSGEDMSSIPTNMAHDAGSSRPSKKKRSYSRDLMDTFHVDMQEVSKEIGKI
        +VFGRDRATGGRCKT VEMGSQT +D EEDDMDINLE FDI NP+GLE PSGEDM S PT+M HD  SSRPSKK+RSYS DLMDTFH  M+E SKEIGKI
Subjt:  IVFGRDRATGGRCKTCVEMGSQTEKDIEEDDMDINLEDFDIPNPYGLEPPSGEDMSSIPTNMAHDAGSSRPSKKKRSYSRDLMDTFHVDMQEVSKEIGKI

Query:  AAWQQEKMEIESSLRKLLYVE
        AAWQ+E +EIESSL K LY E
Subjt:  AAWQQEKMEIESSLRKLLYVE

KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]4.2e-7768.22Show/hide
Query:  MASTNSKVTKHRWTTIEDDALVECLRQLVEEGGLRADNGTFKPGYLVQVQKLMTDKIPGSNIQGHPNARG---LLNKPFPYFYDL------EIVFGRDRA
        MASTNSK TKHRWTTI D+ LVECL QLVEEGG RADNGTFK GYLVQVQKLM +KI GSNIQ  PN +    +L K +    ++         +  +R 
Subjt:  MASTNSKVTKHRWTTIEDDALVECLRQLVEEGGLRADNGTFKPGYLVQVQKLMTDKIPGSNIQGHPNARG---LLNKPFPYFYDL------EIVFGRDRA

Query:  TGGRCKTCVEMGSQTEKDIEEDDMDINLEDFDIPNPYGLEPPSGEDMSSIPTNMAHDAGSSRPSKKKRSYSRDLMDTFHVDMQEVSKEIGKIAAWQQEKM
             K+  +   +T +DIEEDDMDINLEDFDIPNP+GLEPPSGEDM S PT+MAHDAGSSRPSKK+RSYS DLMDTF   M+E SKEIGKIAAWQ+EKM
Subjt:  TGGRCKTCVEMGSQTEKDIEEDDMDINLEDFDIPNPYGLEPPSGEDMSSIPTNMAHDAGSSRPSKKKRSYSRDLMDTFHVDMQEVSKEIGKIAAWQQEKM

Query:  EIESSLRKLLYVELQTIHGMDVDDCLIVVESLLPNP
        EIESSL K LYV+LQTI GMDVDDCLIV ESLLP+P
Subjt:  EIESSLRKLLYVELQTIHGMDVDDCLIVVESLLPNP

TYJ96933.1 retrotransposon protein [Cucumis melo var. makuwa]6.7e-7564.98Show/hide
Query:  MASTNSKVTKHRWTTIEDDALVECLRQLVEEGGLRADNGTFKPGYLVQVQKLMTDKIPGSNIQ-------------------------------------
        MASTNSK TKHRWTTI+DDALVECL QLVEEGG RA+N TFKP YLVQVQKLM +KIP SNIQ                                     
Subjt:  MASTNSKVTKHRWTTIEDDALVECLRQLVEEGGLRADNGTFKPGYLVQVQKLMTDKIPGSNIQ-------------------------------------

Query:  --------------GHPNARGLLNKPFPYFYDLEIVFGRDRATGGRCKTCVEMGSQTEKDIEEDDMDINLEDFDIPNPYGLEPPSGEDMSSIPTNMAHDA
                      GHPNARGLLNKPF YFYDLEIVFGRD+ATGGRCK  VEM SQT +D EEDDMDINLEDFDIPNP+GLEPPSGEDM S   +M HDA
Subjt:  --------------GHPNARGLLNKPFPYFYDLEIVFGRDRATGGRCKTCVEMGSQTEKDIEEDDMDINLEDFDIPNPYGLEPPSGEDMSSIPTNMAHDA

Query:  GSSRPSKKKRSYSRDLMDTFHVDMQEVSKEIGKIAAW
        GSSRPSKK+RSY  DLMDTF   MQE SKEIGKIAAW
Subjt:  GSSRPSKKKRSYSRDLMDTFHVDMQEVSKEIGKIAAW

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]6.5e-9472.58Show/hide
Query:  MASTNSKVTKHRWTTIEDDALVECLRQLVEEGGLRADNGTFKPGYLVQ---VQKLMTDKIPGSN------------------IQGHPNARGLLNKPFPYF
        MASTNSK TKHRWTTIED+ LVECL QLVEEGG RADNGTFK GYL Q   + ++M     G                    ++GHPNA+GLLNKPFPYF
Subjt:  MASTNSKVTKHRWTTIEDDALVECLRQLVEEGGLRADNGTFKPGYLVQ---VQKLMTDKIPGSN------------------IQGHPNARGLLNKPFPYF

Query:  YDLEIVFGRDRATGGRCKTCVEMGSQTEKDIEEDDMDINLEDFDIPNPYGLEPPSGEDMSSIPTNMAHDAGSSRPSKKKRSYSRDLMDTFHVDMQEVSKE
        YDLE+VFGRDRATGGRCKT VEM SQT +D EEDDMDINLEDFDIPNP+GLEPPSGEDM S PT+M HDAGSSRPSKK+RSYS DLMDTF   M+E SKE
Subjt:  YDLEIVFGRDRATGGRCKTCVEMGSQTEKDIEEDDMDINLEDFDIPNPYGLEPPSGEDMSSIPTNMAHDAGSSRPSKKKRSYSRDLMDTFHVDMQEVSKE

Query:  IGKIAAWQQEKMEIESSLRKLLYVELQTIHGMDVDDCLIVVESLLPNP
        IGKIA WQ+EKMEIESSL K LY ELQTI GMDVDDCLIV ESLLP+P
Subjt:  IGKIAAWQQEKMEIESSLRKLLYVELQTIHGMDVDDCLIVVESLLPNP

XP_008455678.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]6.7e-7564.98Show/hide
Query:  MASTNSKVTKHRWTTIEDDALVECLRQLVEEGGLRADNGTFKPGYLVQVQKLMTDKIPGSNIQ-------------------------------------
        MASTNSK TKHRWTTI+DDALVECL QLVEEGG RA+N TFKP YLVQVQKLM +KIP SNIQ                                     
Subjt:  MASTNSKVTKHRWTTIEDDALVECLRQLVEEGGLRADNGTFKPGYLVQVQKLMTDKIPGSNIQ-------------------------------------

Query:  --------------GHPNARGLLNKPFPYFYDLEIVFGRDRATGGRCKTCVEMGSQTEKDIEEDDMDINLEDFDIPNPYGLEPPSGEDMSSIPTNMAHDA
                      GHPNARGLLNKPF YFYDLEIVFGRD+ATGGRCK  VEM SQT +D EEDDMDINLEDFDIPNP+GLEPPSGEDM S   +M HDA
Subjt:  --------------GHPNARGLLNKPFPYFYDLEIVFGRDRATGGRCKTCVEMGSQTEKDIEEDDMDINLEDFDIPNPYGLEPPSGEDMSSIPTNMAHDA

Query:  GSSRPSKKKRSYSRDLMDTFHVDMQEVSKEIGKIAAW
        GSSRPSKK+RSY  DLMDTF   MQE SKEIGKIAAW
Subjt:  GSSRPSKKKRSYSRDLMDTFHVDMQEVSKEIGKIAAW

TrEMBL top hitse value%identityAlignment
A0A1S3C252 uncharacterized protein At2g29880-like3.2e-7564.98Show/hide
Query:  MASTNSKVTKHRWTTIEDDALVECLRQLVEEGGLRADNGTFKPGYLVQVQKLMTDKIPGSNIQ-------------------------------------
        MASTNSK TKHRWTTI+DDALVECL QLVEEGG RA+N TFKP YLVQVQKLM +KIP SNIQ                                     
Subjt:  MASTNSKVTKHRWTTIEDDALVECLRQLVEEGGLRADNGTFKPGYLVQVQKLMTDKIPGSNIQ-------------------------------------

Query:  --------------GHPNARGLLNKPFPYFYDLEIVFGRDRATGGRCKTCVEMGSQTEKDIEEDDMDINLEDFDIPNPYGLEPPSGEDMSSIPTNMAHDA
                      GHPNARGLLNKPF YFYDLEIVFGRD+ATGGRCK  VEM SQT +D EEDDMDINLEDFDIPNP+GLEPPSGEDM S   +M HDA
Subjt:  --------------GHPNARGLLNKPFPYFYDLEIVFGRDRATGGRCKTCVEMGSQTEKDIEEDDMDINLEDFDIPNPYGLEPPSGEDMSSIPTNMAHDA

Query:  GSSRPSKKKRSYSRDLMDTFHVDMQEVSKEIGKIAAW
        GSSRPSKK+RSY  DLMDTF   MQE SKEIGKIAAW
Subjt:  GSSRPSKKKRSYSRDLMDTFHVDMQEVSKEIGKIAAW

A0A5A7U3R2 Retrotransposon protein9.4e-8372.4Show/hide
Query:  MASTNSKVTKHRWTTIEDDALVECLRQLVEEGGLRADNGTFKPGYLVQVQKLMTDKIPGSNIQ-----------------GHPNARGLLNKPFPYFYDLE
        M STN K T+HRWTTIED+ALVECL QL+EEGG R DNGTFK  YLVQ+QKLM +KI GSNIQ                 GHPN R LLNKPFPYFYDLE
Subjt:  MASTNSKVTKHRWTTIEDDALVECLRQLVEEGGLRADNGTFKPGYLVQVQKLMTDKIPGSNIQ-----------------GHPNARGLLNKPFPYFYDLE

Query:  IVFGRDRATGGRCKTCVEMGSQTEKDIEEDDMDINLEDFDIPNPYGLEPPSGEDMSSIPTNMAHDAGSSRPSKKKRSYSRDLMDTFHVDMQEVSKEIGKI
        +VFGRDRATGGRCKT VEMGSQT +D EEDDMDINLE FDI NP+GLE PSGEDM S PT+M HD  SSRPSKK+RSYS DLMDTFH  M+E SKEIGKI
Subjt:  IVFGRDRATGGRCKTCVEMGSQTEKDIEEDDMDINLEDFDIPNPYGLEPPSGEDMSSIPTNMAHDAGSSRPSKKKRSYSRDLMDTFHVDMQEVSKEIGKI

Query:  AAWQQEKMEIESSLRKLLYVE
        AAWQ+E +EIESSL K LY E
Subjt:  AAWQQEKMEIESSLRKLLYVE

A0A5A7U7F7 Retrotransposon protein2.0e-7768.22Show/hide
Query:  MASTNSKVTKHRWTTIEDDALVECLRQLVEEGGLRADNGTFKPGYLVQVQKLMTDKIPGSNIQGHPNARG---LLNKPFPYFYDL------EIVFGRDRA
        MASTNSK TKHRWTTI D+ LVECL QLVEEGG RADNGTFK GYLVQVQKLM +KI GSNIQ  PN +    +L K +    ++         +  +R 
Subjt:  MASTNSKVTKHRWTTIEDDALVECLRQLVEEGGLRADNGTFKPGYLVQVQKLMTDKIPGSNIQGHPNARG---LLNKPFPYFYDL------EIVFGRDRA

Query:  TGGRCKTCVEMGSQTEKDIEEDDMDINLEDFDIPNPYGLEPPSGEDMSSIPTNMAHDAGSSRPSKKKRSYSRDLMDTFHVDMQEVSKEIGKIAAWQQEKM
             K+  +   +T +DIEEDDMDINLEDFDIPNP+GLEPPSGEDM S PT+MAHDAGSSRPSKK+RSYS DLMDTF   M+E SKEIGKIAAWQ+EKM
Subjt:  TGGRCKTCVEMGSQTEKDIEEDDMDINLEDFDIPNPYGLEPPSGEDMSSIPTNMAHDAGSSRPSKKKRSYSRDLMDTFHVDMQEVSKEIGKIAAWQQEKM

Query:  EIESSLRKLLYVELQTIHGMDVDDCLIVVESLLPNP
        EIESSL K LYV+LQTI GMDVDDCLIV ESLLP+P
Subjt:  EIESSLRKLLYVELQTIHGMDVDDCLIVVESLLPNP

A0A5D3BC95 Retrotransposon protein3.2e-7564.98Show/hide
Query:  MASTNSKVTKHRWTTIEDDALVECLRQLVEEGGLRADNGTFKPGYLVQVQKLMTDKIPGSNIQ-------------------------------------
        MASTNSK TKHRWTTI+DDALVECL QLVEEGG RA+N TFKP YLVQVQKLM +KIP SNIQ                                     
Subjt:  MASTNSKVTKHRWTTIEDDALVECLRQLVEEGGLRADNGTFKPGYLVQVQKLMTDKIPGSNIQ-------------------------------------

Query:  --------------GHPNARGLLNKPFPYFYDLEIVFGRDRATGGRCKTCVEMGSQTEKDIEEDDMDINLEDFDIPNPYGLEPPSGEDMSSIPTNMAHDA
                      GHPNARGLLNKPF YFYDLEIVFGRD+ATGGRCK  VEM SQT +D EEDDMDINLEDFDIPNP+GLEPPSGEDM S   +M HDA
Subjt:  --------------GHPNARGLLNKPFPYFYDLEIVFGRDRATGGRCKTCVEMGSQTEKDIEEDDMDINLEDFDIPNPYGLEPPSGEDMSSIPTNMAHDA

Query:  GSSRPSKKKRSYSRDLMDTFHVDMQEVSKEIGKIAAW
        GSSRPSKK+RSY  DLMDTF   MQE SKEIGKIAAW
Subjt:  GSSRPSKKKRSYSRDLMDTFHVDMQEVSKEIGKIAAW

A0A5D3C7T4 Uncharacterized protein3.1e-9472.58Show/hide
Query:  MASTNSKVTKHRWTTIEDDALVECLRQLVEEGGLRADNGTFKPGYLVQ---VQKLMTDKIPGSN------------------IQGHPNARGLLNKPFPYF
        MASTNSK TKHRWTTIED+ LVECL QLVEEGG RADNGTFK GYL Q   + ++M     G                    ++GHPNA+GLLNKPFPYF
Subjt:  MASTNSKVTKHRWTTIEDDALVECLRQLVEEGGLRADNGTFKPGYLVQ---VQKLMTDKIPGSN------------------IQGHPNARGLLNKPFPYF

Query:  YDLEIVFGRDRATGGRCKTCVEMGSQTEKDIEEDDMDINLEDFDIPNPYGLEPPSGEDMSSIPTNMAHDAGSSRPSKKKRSYSRDLMDTFHVDMQEVSKE
        YDLE+VFGRDRATGGRCKT VEM SQT +D EEDDMDINLEDFDIPNP+GLEPPSGEDM S PT+M HDAGSSRPSKK+RSYS DLMDTF   M+E SKE
Subjt:  YDLEIVFGRDRATGGRCKTCVEMGSQTEKDIEEDDMDINLEDFDIPNPYGLEPPSGEDMSSIPTNMAHDAGSSRPSKKKRSYSRDLMDTFHVDMQEVSKE

Query:  IGKIAAWQQEKMEIESSLRKLLYVELQTIHGMDVDDCLIVVESLLPNP
        IGKIA WQ+EKMEIESSL K LY ELQTI GMDVDDCLIV ESLLP+P
Subjt:  IGKIAAWQQEKMEIESSLRKLLYVELQTIHGMDVDDCLIVVESLLPNP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGACAAATTCAAAGGTCACTAAGCATCGGTGGACAACCATTGAGGATGACGCATTAGTTGAGTGCTTACGACAACTAGTGGAGGAAGGTGGCTTGAGGGCTGA
TAATGGGACATTCAAACCTGGATATTTGGTACAAGTACAAAAACTAATGACAGATAAAATTCCTGGAAGCAACATACAAGGACACCCCAATGCTCGAGGTCTATTGAACA
AACCATTTCCTTACTTCTATGACTTGGAAATTGTGTTTGGTAGAGATAGGGCTACTGGTGGTAGATGTAAGACATGCGTTGAAATGGGCTCACAAACTGAAAAAGATATT
GAGGAAGATGACATGGACATTAATCTCGAAGATTTTGATATTCCAAATCCATATGGGCTCGAGCCACCATCGGGGGAGGACATGTCATCTATTCCAACAAATATGGCACA
TGATGCAGGATCATCTAGGCCAAGTAAGAAAAAGCGATCATATTCAAGGGATCTCATGGACACATTTCATGTAGATATGCAAGAAGTTTCCAAGGAAATTGGAAAGATTG
CTGCATGGCAACAAGAAAAAATGGAAATCGAATCATCCCTACGCAAACTATTATATGTTGAATTACAGACTATTCATGGAATGGATGTAGACGATTGTTTGATTGTAGTC
GAGTCTCTATTACCTAATCCACGATGTTGCACACATTCCTTGACTGTCACACACCGCCCCAAATGTCACTTCATGCGACTAGATGGAAGCGTGCCGCCTAGACACTCAAT
GTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGACAAATTCAAAGGTCACTAAGCATCGGTGGACAACCATTGAGGATGACGCATTAGTTGAGTGCTTACGACAACTAGTGGAGGAAGGTGGCTTGAGGGCTGA
TAATGGGACATTCAAACCTGGATATTTGGTACAAGTACAAAAACTAATGACAGATAAAATTCCTGGAAGCAACATACAAGGACACCCCAATGCTCGAGGTCTATTGAACA
AACCATTTCCTTACTTCTATGACTTGGAAATTGTGTTTGGTAGAGATAGGGCTACTGGTGGTAGATGTAAGACATGCGTTGAAATGGGCTCACAAACTGAAAAAGATATT
GAGGAAGATGACATGGACATTAATCTCGAAGATTTTGATATTCCAAATCCATATGGGCTCGAGCCACCATCGGGGGAGGACATGTCATCTATTCCAACAAATATGGCACA
TGATGCAGGATCATCTAGGCCAAGTAAGAAAAAGCGATCATATTCAAGGGATCTCATGGACACATTTCATGTAGATATGCAAGAAGTTTCCAAGGAAATTGGAAAGATTG
CTGCATGGCAACAAGAAAAAATGGAAATCGAATCATCCCTACGCAAACTATTATATGTTGAATTACAGACTATTCATGGAATGGATGTAGACGATTGTTTGATTGTAGTC
GAGTCTCTATTACCTAATCCACGATGTTGCACACATTCCTTGACTGTCACACACCGCCCCAAATGTCACTTCATGCGACTAGATGGAAGCGTGCCGCCTAGACACTCAAT
GTAA
Protein sequenceShow/hide protein sequence
MASTNSKVTKHRWTTIEDDALVECLRQLVEEGGLRADNGTFKPGYLVQVQKLMTDKIPGSNIQGHPNARGLLNKPFPYFYDLEIVFGRDRATGGRCKTCVEMGSQTEKDI
EEDDMDINLEDFDIPNPYGLEPPSGEDMSSIPTNMAHDAGSSRPSKKKRSYSRDLMDTFHVDMQEVSKEIGKIAAWQQEKMEIESSLRKLLYVELQTIHGMDVDDCLIVV
ESLLPNPRCCTHSLTVTHRPKCHFMRLDGSVPPRHSM