CuGenDBv2

Gene ID	PI0028803
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr08:5504293..5504778
RNA-Seq Expression	PI0028803
Synteny	PI0028803
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0049670.1 gag/pol protein [Cucumis melo var. makuwa]

2.5e-51

73.33

Show/hide

Query:  MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHF
        MEE P  ++QNAS++V DAYD WTK NDKAR+YILASM D+L KKHE MVT  QI+D LREMFGQPS QI QE IK++Y+AH+ E QS+REHVLDMI  F
Subjt:  MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHF

Query:  NVAEMNRVVFNEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNEL
        NVAEMN  VF+EKSQVS+ILKSLPKSFLQF SNA +NKIEYNMTTL  EL
Subjt:  NVAEMNRVVFNEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNEL

KAA0054556.1 hypothetical protein E6C27_scaffold24G003420 [Cucumis melo var. makuwa]

1.3e-52

73.72

Show/hide

Query:  MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHF
        ME+C     QNASQ+V+D YDRWTKANDKA +YILASM D+L KKHE MV ARQIMDS RE+FGQPS QI QE IK+VY+A + +DQSV+E+VLDMIV F
Subjt:  MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHF

Query:  NVAEMNRVVFNEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL
        NVAEMN VVF+EKSQVS+ILKSL KSFLQF  N  MNKIEYNMTTL  ELQ FQSL
Subjt:  NVAEMNRVVFNEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL

KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]

2.3e-57

76.28

Show/hide

Query:  MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHF
        MEECP   +QNASQ+V+DAYD WTKANDKA +Y+LAS+ D+L KKHE MVTARQIMDSLREMFGQPS QI QE IK+VY+A + E QSVREHVL MIV+F
Subjt:  MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHF

Query:  NVAEMNRVVFNEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL
        NVAEMN+ +F+EKSQVS+ILKSL KSFLQFCSN  MNKIEYNMTTL  ELQ FQSL
Subjt:  NVAEMNRVVFNEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL

TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]

2.3e-57

76.28

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Query:  MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHF
        MEECP   +QNASQ+V+DAYD WTKANDKA +Y+LAS+ D+L KKHE MVTARQIMDSLREMFGQPS QI QE IK+VY+A + E QSVREHVL MIV+F
Subjt:  MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHF

Query:  NVAEMNRVVFNEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL
        NVAEMN+ +F+EKSQVS+ILKSL KSFLQFCSN  MNKIEYNMTTL  ELQ FQSL
Subjt:  NVAEMNRVVFNEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL

TYK21841.1 gag/pol protein [Cucumis melo var. makuwa]

4.0e-57

76.92

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Query:  MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHF
        M+ECP   +QNASQ+V+D YDRWTKANDKARVYILASM D+L KKHE MVTA QIMDSLREMFGQ S QI Q+ IK+VY+AH+ E QSVR+HV+DMIVHF
Subjt:  MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHF

Query:  NVAEMNRVVFNEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL
        NVAEMN VVF+EKSQ+SFILKSLPKSFLQF SNA MNKI YNMTT   EL  FQSL
Subjt:  NVAEMNRVVFNEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UJZ3 Reverse transcriptase Ty1/copia-type domain-containing protein

6.4e-53

73.72

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Query:  MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHF
        ME+C     QNASQ+V+D YDRWTKANDKA +YILASM D+L KKHE MV ARQIMDS RE+FGQPS QI QE IK+VY+A + +DQSV+E+VLDMIV F
Subjt:  MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHF

Query:  NVAEMNRVVFNEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL
        NVAEMN VVF+EKSQVS+ILKSL KSFLQF  N  MNKIEYNMTTL  ELQ FQSL
Subjt:  NVAEMNRVVFNEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL

A0A5A7VA67 Gag/pol protein

1.1e-57

76.28

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Query:  MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHF
        MEECP   +QNASQ+V+DAYD WTKANDKA +Y+LAS+ D+L KKHE MVTARQIMDSLREMFGQPS QI QE IK+VY+A + E QSVREHVL MIV+F
Subjt:  MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHF

Query:  NVAEMNRVVFNEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL
        NVAEMN+ +F+EKSQVS+ILKSL KSFLQFCSN  MNKIEYNMTTL  ELQ FQSL
Subjt:  NVAEMNRVVFNEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL

A0A5D3CLL2 Gag/pol protein

1.2e-51

73.33

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Query:  MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHF
        MEE P  ++QNAS++V DAYD WTK NDKAR+YILASM D+L KKHE MVT  QI+D LREMFGQPS QI QE IK++Y+AH+ E QS+REHVLDMI  F
Subjt:  MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHF

Query:  NVAEMNRVVFNEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNEL
        NVAEMN  VF+EKSQVS+ILKSLPKSFLQF SNA +NKIEYNMTTL  EL
Subjt:  NVAEMNRVVFNEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNEL

A0A5D3D0D9 Gag/pol protein

1.1e-57

76.28

Show/hide

Query:  MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHF
        MEECP   +QNASQ+V+DAYD WTKANDKA +Y+LAS+ D+L KKHE MVTARQIMDSLREMFGQPS QI QE IK+VY+A + E QSVREHVL MIV+F
Subjt:  MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHF

Query:  NVAEMNRVVFNEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL
        NVAEMN+ +F+EKSQVS+ILKSL KSFLQFCSN  MNKIEYNMTTL  ELQ FQSL
Subjt:  NVAEMNRVVFNEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL

A0A5D3DDU7 Gag/pol protein

1.9e-57

76.92

Show/hide

Query:  MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHF
        M+ECP   +QNASQ+V+D YDRWTKANDKARVYILASM D+L KKHE MVTA QIMDSLREMFGQ S QI Q+ IK+VY+AH+ E QSVR+HV+DMIVHF
Subjt:  MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHF

Query:  NVAEMNRVVFNEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL
        NVAEMN VVF+EKSQ+SFILKSLPKSFLQF SNA MNKI YNMTT   EL  FQSL
Subjt:  NVAEMNRVVFNEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAGGAATGTCCTTCTTCCACTTCTCAAAATGCATCCCAGACTGTCAGGGATGCATATGATCGCTGGACAAAGGCCAATGACAAGGCTCGTGTCTACATCTTGGCTAG
TATGTTTGACGTACTGATCAAGAAACATGAGACCATGGTAACTGCACGTCAGATCATGGACTCTCTCCGAGAGATGTTTGGACAACCGTCCACTCAGATCTGGCAAGAGT
TAATTAAACACGTTTATGATGCCCATTTGAATGAGGACCAATCTGTTAGAGAACATGTTCTCGACATGATAGTCCATTTCAACGTAGCAGAAATGAACAGAGTGGTCTTT
AATGAGAAGAGTCAAGTGTCCTTTATCTTGAAATCTCTTCCGAAGAGCTTTCTTCAATTCTGTAGCAATGCGGTTATGAACAAGATAGAGTACAATATGACTACCCTCTT
TAATGAGTTGCAGATTTTTCAGTCTCTTATGAATAATGAAGGATAG

mRNA sequence

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Protein sequence

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MEECPSSTSQNASQTVRDAYDRWTKANDKARVYILASMFDVLIKKHETMVTARQIMDSLREMFGQPSTQIWQELIKHVYDAHLNEDQSVREHVLDMIVHFNVAEMNRVVF
NEKSQVSFILKSLPKSFLQFCSNAVMNKIEYNMTTLFNELQIFQSLMNNEG

PI0028803 (gene) of Melon (PI 482460) v1 genome