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PI0028824 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028824
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr02:9988745..9999860
RNA-Seq ExpressionPI0028824
SyntenyPI0028824
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047785.1 putative retrotransposon protein [Cucumis melo var. makuwa]4.4e-2059.43Show/hide
Query:  MHGMEKSLTELPGMLKTAKLNIKSNLEILMVQKGKNPKKKERDQGKGRDKVAAKASKANAHDAPRPK-PKEGECYHCKEIEHYERNSLLYLEELKKNKGN
        MH  EKSL +L GMLKTA+LNIKS+ E LM++KGKNPKK+E+ QG                   +PK PKEGE YHCKEI H++RN  LYLEELKKNKG+
Subjt:  MHGMEKSLTELPGMLKTAKLNIKSNLEILMVQKGKNPKKKERDQGKGRDKVAAKASKANAHDAPRPK-PKEGECYHCKEIEHYERNSLLYLEELKKNKGN

Query:  VPSISS
        VPS SS
Subjt:  VPSISS

KAA0056624.1 hypothetical protein E6C27_scaffold288G001440 [Cucumis melo var. makuwa]2.3e-2964.91Show/hide
Query:  MHGMEKSLTELPGMLKTAKLNIKSNLEILMVQKGKNPKKKERDQGKGRDKVAAKASKANA----HDAPRPK----PKEGECYHCKEIEHYERNSLLYLEE
        MH +EKSLT+L GMLKTAKLNIK + E+LMVQKGKNPKK+ERDQGKG++KV  KASK +A       P+PK    PKEGECY CK+IEH+ R   +YLEE
Subjt:  MHGMEKSLTELPGMLKTAKLNIKSNLEILMVQKGKNPKKKERDQGKGRDKVAAKASKANA----HDAPRPK----PKEGECYHCKEIEHYERNSLLYLEE

Query:  LKKNKGNVPSISSY
        LKKNKG++PS S +
Subjt:  LKKNKGNVPSISSY

KAA0066495.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.8e-2764.29Show/hide
Query:  MHGMEKSLTELPGMLKTAKLNIKSNLEILMVQKGKNPKKKERDQGKGRDKVAAKASKANAHDAPRPK--------PKEGECYHCKEIEHYERNSLLYLEE
        MHGM+KSLTEL GMLKT KLNIKS+ ++LM+QKGKNPKKKE DQGKG+ KVA K SK +A  APRP+        PKEGE YHCK+I +++RN  LYL+ 
Subjt:  MHGMEKSLTELPGMLKTAKLNIKSNLEILMVQKGKNPKKKERDQGKGRDKVAAKASKANAHDAPRPK--------PKEGECYHCKEIEHYERNSLLYLEE

Query:  LKKNKGNVPSIS
        LKKNK +VP  S
Subjt:  LKKNKGNVPSIS

TYK07553.1 putative retrotransposon protein [Cucumis melo var. makuwa]2.9e-2466.67Show/hide
Query:  TAKLNIKSNLEILMVQKGKNPKKKERDQGKGRDKVAAKASKANAHDAPRPK--------PKEGECYHCKEIEHYERNSLLYLEELKKNKGNVPSIS
        TAKLNIKS+ E+LMVQKGKNPKK+ERDQGKG++KV  KASK +A   PRP+        PKEGECY CK+IEH++R   LYLEELKKNKG++PS S
Subjt:  TAKLNIKSNLEILMVQKGKNPKKKERDQGKGRDKVAAKASKANAHDAPRPK--------PKEGECYHCKEIEHYERNSLLYLEELKKNKGNVPSIS

XP_016901775.1 PREDICTED: uncharacterized protein LOC107991397 [Cucumis melo]5.0e-2460.55Show/hide
Query:  MHGMEKSLTELPGMLKTAKLNIKSNLEILMVQKGKNPKKKERDQGKGRDKVAAKASKANAHDAPRPK--------PKEGECYHCKEIEHYERNSLLYLEE
        M+ M+KSL++L GM K AKLNIKSN EILM+QKGKNPK + +DQGKG +KV  K SK +   AP+P+         KE ECYHCK+I H+ERN  LYLEE
Subjt:  MHGMEKSLTELPGMLKTAKLNIKSNLEILMVQKGKNPKKKERDQGKGRDKVAAKASKANAHDAPRPK--------PKEGECYHCKEIEHYERNSLLYLEE

Query:  LKKNKGNVP
        LK NKG+VP
Subjt:  LKKNKGNVP

TrEMBL top hitse value%identityAlignment
A0A1S4E1A7 uncharacterized protein LOC1079913972.4e-2460.55Show/hide
Query:  MHGMEKSLTELPGMLKTAKLNIKSNLEILMVQKGKNPKKKERDQGKGRDKVAAKASKANAHDAPRPK--------PKEGECYHCKEIEHYERNSLLYLEE
        M+ M+KSL++L GM K AKLNIKSN EILM+QKGKNPK + +DQGKG +KV  K SK +   AP+P+         KE ECYHCK+I H+ERN  LYLEE
Subjt:  MHGMEKSLTELPGMLKTAKLNIKSNLEILMVQKGKNPKKKERDQGKGRDKVAAKASKANAHDAPRPK--------PKEGECYHCKEIEHYERNSLLYLEE

Query:  LKKNKGNVP
        LK NKG+VP
Subjt:  LKKNKGNVP

A0A5A7UN47 Uncharacterized protein1.1e-2964.91Show/hide
Query:  MHGMEKSLTELPGMLKTAKLNIKSNLEILMVQKGKNPKKKERDQGKGRDKVAAKASKANA----HDAPRPK----PKEGECYHCKEIEHYERNSLLYLEE
        MH +EKSLT+L GMLKTAKLNIK + E+LMVQKGKNPKK+ERDQGKG++KV  KASK +A       P+PK    PKEGECY CK+IEH+ R   +YLEE
Subjt:  MHGMEKSLTELPGMLKTAKLNIKSNLEILMVQKGKNPKKKERDQGKGRDKVAAKASKANA----HDAPRPK----PKEGECYHCKEIEHYERNSLLYLEE

Query:  LKKNKGNVPSISSY
        LKKNKG++PS S +
Subjt:  LKKNKGNVPSISSY

A0A5A7VL77 Retrovirus-related Pol polyprotein from transposon TNT 1-942.3e-2764.29Show/hide
Query:  MHGMEKSLTELPGMLKTAKLNIKSNLEILMVQKGKNPKKKERDQGKGRDKVAAKASKANAHDAPRPK--------PKEGECYHCKEIEHYERNSLLYLEE
        MHGM+KSLTEL GMLKT KLNIKS+ ++LM+QKGKNPKKKE DQGKG+ KVA K SK +A  APRP+        PKEGE YHCK+I +++RN  LYL+ 
Subjt:  MHGMEKSLTELPGMLKTAKLNIKSNLEILMVQKGKNPKKKERDQGKGRDKVAAKASKANAHDAPRPK--------PKEGECYHCKEIEHYERNSLLYLEE

Query:  LKKNKGNVPSIS
        LKKNK +VP  S
Subjt:  LKKNKGNVPSIS

A0A5D3C6L2 Putative retrotransposon protein1.4e-2466.67Show/hide
Query:  TAKLNIKSNLEILMVQKGKNPKKKERDQGKGRDKVAAKASKANAHDAPRPK--------PKEGECYHCKEIEHYERNSLLYLEELKKNKGNVPSIS
        TAKLNIKS+ E+LMVQKGKNPKK+ERDQGKG++KV  KASK +A   PRP+        PKEGECY CK+IEH++R   LYLEELKKNKG++PS S
Subjt:  TAKLNIKSNLEILMVQKGKNPKKKERDQGKGRDKVAAKASKANAHDAPRPK--------PKEGECYHCKEIEHYERNSLLYLEELKKNKGNVPSIS

A0A5D3CZL7 Putative polyprotein2.4e-2460.55Show/hide
Query:  MHGMEKSLTELPGMLKTAKLNIKSNLEILMVQKGKNPKKKERDQGKGRDKVAAKASKANAHDAPRPK--------PKEGECYHCKEIEHYERNSLLYLEE
        M+ M+KSL++L GM K AKLNIKSN EILM+QKGKNPK + +DQGKG +KV  K SK +   AP+P+         KE ECYHCK+I H+ERN  LYLEE
Subjt:  MHGMEKSLTELPGMLKTAKLNIKSNLEILMVQKGKNPKKKERDQGKGRDKVAAKASKANAHDAPRPK--------PKEGECYHCKEIEHYERNSLLYLEE

Query:  LKKNKGNVP
        LK NKG+VP
Subjt:  LKKNKGNVP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGGGATGGAGAAGAGTTTGACTGAGCTGCCTGGGATGCTAAAGACTGCTAAGTTGAACATCAAGTCCAATCTTGAGATTTTGATGGTGCAAAAAGGGAAGAATCC
CAAGAAAAAGGAACGAGATCAAGGAAAAGGTAGGGACAAGGTTGCTGCTAAGGCATCAAAAGCTAATGCTCATGATGCACCTAGGCCCAAACCTAAAGAAGGAGAATGTT
ATCACTGCAAGGAAATTGAGCATTATGAGAGGAATAGTCTTCTTTATCTGGAAGAACTGAAGAAGAACAAGGGAAATGTCCCATCGATTTCATCATATACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATGGGATGGAGAAGAGTTTGACTGAGCTGCCTGGGATGCTAAAGACTGCTAAGTTGAACATCAAGTCCAATCTTGAGATTTTGATGGTGCAAAAAGGGAAGAATCC
CAAGAAAAAGGAACGAGATCAAGGAAAAGGTAGGGACAAGGTTGCTGCTAAGGCATCAAAAGCTAATGCTCATGATGCACCTAGGCCCAAACCTAAAGAAGGAGAATGTT
ATCACTGCAAGGAAATTGAGCATTATGAGAGGAATAGTCTTCTTTATCTGGAAGAACTGAAGAAGAACAAGGGAAATGTCCCATCGATTTCATCATATACTTAG
Protein sequenceShow/hide protein sequence
MHGMEKSLTELPGMLKTAKLNIKSNLEILMVQKGKNPKKKERDQGKGRDKVAAKASKANAHDAPRPKPKEGECYHCKEIEHYERNSLLYLEELKKNKGNVPSISSYT