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PI0028884 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0028884
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr08:155354..155917
RNA-Seq ExpressionPI0028884
SyntenyPI0028884
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062536.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.4e-6070.56Show/hide
Query:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVINHPIEKCFALKELILRLAREKKIELDLEEVAQTNHATMTIMLDAPPSTSMFEKRESLVQFGTC
        MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVI+HP+EKCF LKELILRLAREKKIELDLEEVAQTNHA   IM +A     +FE+RESLVQFGT 
Subjt:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVINHPIEKCFALKELILRLAREKKIELDLEEVAQTNHATMTIMLDAPPSTSMFEKRESLVQFGTC

Query:  EPVVVRFQQKIVLEDSRKKKK-IEEDDEGWIVVTRRKKRQLHTIKKESRSYQNYRRGNVSQKIIIRRRLGSLSLCRRKTR
        EPVVVRF Q++ LEDS++ ++ IEEDDEGWI+VTRRKKR+   I+KE R Y+NYRRGN +QK   +++   L L   + +
Subjt:  EPVVVRFQQKIVLEDSRKKKK-IEEDDEGWIVVTRRKKRQLHTIKKESRSYQNYRRGNVSQKIIIRRRLGSLSLCRRKTR

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]7.6e-6072.99Show/hide
Query:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVINHPIEKCFALKELILRLAREKKIELDLEEVAQTNHATMTIMLDAPPSTSMFEKRESLVQFGTC
        MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVI+HP+EKCF LKELILRLAREK+IELDLEEVAQTNHA +TIM +A  S  +FE+R+SLVQFGT 
Subjt:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVINHPIEKCFALKELILRLAREKKIELDLEEVAQTNHATMTIMLDAPPSTSMFEKRESLVQFGTC

Query:  EPVVVRFQQKIVLEDSR-KKKKIEEDDEGWIVVTRRKKRQLHTIKKESRSYQNYRRGNVSQKIIIRRRLGSLSL
        EP+VV+F Q+I  ED + +K+ IEEDDEGWIVVT RKKRQ    ++ESRSYQNYRRGN +QK   +++   L L
Subjt:  EPVVVRFQQKIVLEDSR-KKKKIEEDDEGWIVVTRRKKRQLHTIKKESRSYQNYRRGNVSQKIIIRRRLGSLSL

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]7.6e-6072.99Show/hide
Query:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVINHPIEKCFALKELILRLAREKKIELDLEEVAQTNHATMTIMLDAPPSTSMFEKRESLVQFGTC
        MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVI+HP+EKCF LKELILRLAREK+IELDLEEVAQTNHA +TIM +A  S  +FE+R+SLVQFGT 
Subjt:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVINHPIEKCFALKELILRLAREKKIELDLEEVAQTNHATMTIMLDAPPSTSMFEKRESLVQFGTC

Query:  EPVVVRFQQKIVLEDSR-KKKKIEEDDEGWIVVTRRKKRQLHTIKKESRSYQNYRRGNVSQKIIIRRRLGSLSL
        EP+VV+F Q+I  ED + +K+ IEEDDEGWIVVT RKKRQ    ++ESRSYQNYRRGN +QK   +++   L L
Subjt:  EPVVVRFQQKIVLEDSR-KKKKIEEDDEGWIVVTRRKKRQLHTIKKESRSYQNYRRGNVSQKIIIRRRLGSLSL

XP_031740568.1 uncharacterized protein LOC116403508 [Cucumis sativus]7.6e-6072.99Show/hide
Query:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVINHPIEKCFALKELILRLAREKKIELDLEEVAQTNHATMTIMLDAPPSTSMFEKRESLVQFGTC
        MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVI+HP+EKCF LKELILRLAREK+IELDLEEVAQTNHA +TIM +A  S  +FE+R+SLVQFGT 
Subjt:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVINHPIEKCFALKELILRLAREKKIELDLEEVAQTNHATMTIMLDAPPSTSMFEKRESLVQFGTC

Query:  EPVVVRFQQKIVLEDSR-KKKKIEEDDEGWIVVTRRKKRQLHTIKKESRSYQNYRRGNVSQKIIIRRRLGSLSL
        EP+VV+F Q+I  ED + +K+ IEEDDEGWIVVT RKKRQ    ++ESRSYQNYRRGN +QK   +++   L L
Subjt:  EPVVVRFQQKIVLEDSR-KKKKIEEDDEGWIVVTRRKKRQLHTIKKESRSYQNYRRGNVSQKIIIRRRLGSLSL

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]7.6e-6072.99Show/hide
Query:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVINHPIEKCFALKELILRLAREKKIELDLEEVAQTNHATMTIMLDAPPSTSMFEKRESLVQFGTC
        MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVI+HP+EKCF LKELILRLAREK+IELDLEEVAQTNHA +TIM +A  S  +FE+R+SLVQFGT 
Subjt:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVINHPIEKCFALKELILRLAREKKIELDLEEVAQTNHATMTIMLDAPPSTSMFEKRESLVQFGTC

Query:  EPVVVRFQQKIVLEDSR-KKKKIEEDDEGWIVVTRRKKRQLHTIKKESRSYQNYRRGNVSQKIIIRRRLGSLSL
        EP+VV+F Q+I  ED + +K+ IEEDDEGWIVVT RKKRQ    ++ESRSYQNYRRGN +QK   +++   L L
Subjt:  EPVVVRFQQKIVLEDSR-KKKKIEEDDEGWIVVTRRKKRQLHTIKKESRSYQNYRRGNVSQKIIIRRRLGSLSL

TrEMBL top hitse value%identityAlignment
A0A5A7TJZ7 Retrotransposon gag protein1.8e-5975.93Show/hide
Query:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVINHPIEKCFALKELILRLAREKKIELDLEEVAQTNHATMTIMLDAPPSTSMFEKRESLVQFGTC
        MLEQLLEKQLIQL ECKRPEQAGKVDDPNYCKYHRVI+HP+EKCF LKELILRLAREKK+EL+LEEVAQTNHA +TIM +      +FE+RESLVQFGT 
Subjt:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVINHPIEKCFALKELILRLAREKKIELDLEEVAQTNHATMTIMLDAPPSTSMFEKRESLVQFGTC

Query:  EPVVVRFQQKIVLEDSRKKKK-IEEDDEGWIVVTRRKKRQLHTIKKESRSYQNYRRGNVSQK
        EPVVV+F Q++  EDSR+K++ IEEDDEGWIVVTRRKKR+  +I+KESR Y+NYRRGN ++K
Subjt:  EPVVVRFQQKIVLEDSRKKKK-IEEDDEGWIVVTRRKKRQLHTIKKESRSYQNYRRGNVSQK

A0A5A7U0N3 Retrotransposon gag protein2.2e-5768.28Show/hide
Query:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVINHPIEKCFALKELILRLAREKKIELDLEEVAQTNHATMTIMLDAPPSTSMFEKRESLVQFGTC
        +L+QLLEK LIQLPECKRPEQAGKVD PN+CKYHRVI+HP+EK F LKELILRLAREKKIELDLEEVAQTNH  +TIM  A     +FE+RESLVQFGT 
Subjt:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVINHPIEKCFALKELILRLAREKKIELDLEEVAQTNHATMTIMLDAPPSTSMFEKRESLVQFGTC

Query:  EPVVVRFQQKIVLEDSRKKKK-IEEDDEGWIVVTRRKKRQLHTIKKESRSYQNYRRGNVSQKIIIRRRLGSLSLCRRKTRILLDLS
        EP VV+F Q+I  ED ++K++ +EEDDEGWIVVTRRKKR+   ++KESR Y NYRRGN +QK   +++     L  RKTRI LDLS
Subjt:  EPVVVRFQQKIVLEDSRKKKK-IEEDDEGWIVVTRRKKRQLHTIKKESRSYQNYRRGNVSQKIIIRRRLGSLSLCRRKTRILLDLS

A0A5A7ULK6 Retrotransposon gag protein6.2e-6072.99Show/hide
Query:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVINHPIEKCFALKELILRLAREKKIELDLEEVAQTNHATMTIMLDAPPSTSMFEKRESLVQFGTC
        MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVI+HP+EKCF LKELILRLAREKKIELDLEEVAQTNHA   IM +A     +FE+RESLVQFGT 
Subjt:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVINHPIEKCFALKELILRLAREKKIELDLEEVAQTNHATMTIMLDAPPSTSMFEKRESLVQFGTC

Query:  EPVVVRFQQKIVLEDSRKKKK-IEEDDEGWIVVTRRKKRQLHTIKKESRSYQNYRRGNVSQKIIIRRRLGSLSL
        E VVVRF Q++ LEDS++K++ IEEDDEGWI+VTRRKKR+   I+KE R Y+NYRRGN +QK   +++   L L
Subjt:  EPVVVRFQQKIVLEDSRKKKK-IEEDDEGWIVVTRRKKRQLHTIKKESRSYQNYRRGNVSQKIIIRRRLGSLSL

A0A5A7V7Z6 Ty3-gypsy retrotransposon protein1.6e-6070.56Show/hide
Query:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVINHPIEKCFALKELILRLAREKKIELDLEEVAQTNHATMTIMLDAPPSTSMFEKRESLVQFGTC
        MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVI+HP+EKCF LKELILRLAREKKIELDLEEVAQTNHA   IM +A     +FE+RESLVQFGT 
Subjt:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVINHPIEKCFALKELILRLAREKKIELDLEEVAQTNHATMTIMLDAPPSTSMFEKRESLVQFGTC

Query:  EPVVVRFQQKIVLEDSRKKKK-IEEDDEGWIVVTRRKKRQLHTIKKESRSYQNYRRGNVSQKIIIRRRLGSLSLCRRKTR
        EPVVVRF Q++ LEDS++ ++ IEEDDEGWI+VTRRKKR+   I+KE R Y+NYRRGN +QK   +++   L L   + +
Subjt:  EPVVVRFQQKIVLEDSRKKKK-IEEDDEGWIVVTRRKKRQLHTIKKESRSYQNYRRGNVSQKIIIRRRLGSLSLCRRKTR

A0A5D3BSG5 Uncharacterized protein4.5e-5868.33Show/hide
Query:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVINHPIEKCFALKELILRLAREKKIELDLEEVAQTNHATMTIMLDAPPSTSMFEKRESLVQFGTC
        MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVI+H +EKCF LKELILRLAREKKIELDLEEVAQTNHA   IM +A     +FE+RESL+QFGT 
Subjt:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVINHPIEKCFALKELILRLAREKKIELDLEEVAQTNHATMTIMLDAPPSTSMFEKRESLVQFGTC

Query:  EPVVVRFQQKIVLEDSRKKKK-IEEDDEGWIVVTRRKKRQLHTIKKESRSYQNYRRGNVSQKIIIRRRLGSLSLCRRKTR
        EPVVVRF Q++  EDS++K++ IEEDDEGW +VTRRKKR+   I+KE R Y+NYR+GN +QK   +++   L L   + +
Subjt:  EPVVVRFQQKIVLEDSRKKKK-IEEDDEGWIVVTRRKKRQLHTIKKESRSYQNYRRGNVSQKIIIRRRLGSLSLCRRKTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGAGCAACTACTGGAGAAGCAGCTAATCCAACTACCAGAATGTAAACGACCTGAGCAAGCAGGAAAGGTAGATGATCCCAACTACTGCAAGTATCATCGAGTCAT
CAATCACCCAATAGAAAAATGTTTTGCGCTGAAGGAGCTAATTCTAAGGTTGGCTCGTGAGAAAAAGATCGAGCTAGACTTGGAGGAAGTAGCTCAAACAAACCATGCCA
CAATGACGATAATGCTGGATGCTCCTCCATCAACATCAATGTTTGAGAAAAGAGAAAGTCTGGTCCAATTCGGGACCTGTGAGCCTGTGGTTGTTCGATTCCAGCAGAAA
ATTGTGTTGGAAGATTCTAGAAAAAAGAAAAAAATTGAAGAGGATGATGAAGGGTGGATAGTTGTGACCCGTCGGAAGAAAAGACAACTACATACTATTAAAAAAGAGTC
CCGCTCCTATCAAAATTATAGGAGAGGGAACGTGTCCCAAAAAATAATAATAAGAAGAAGACTTGGAAGCCTAAGCTTGTGCAGGAGGAAAACGAGGATTCTCCTTGACC
TCAGCGTCTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTAGAGCAACTACTGGAGAAGCAGCTAATCCAACTACCAGAATGTAAACGACCTGAGCAAGCAGGAAAGGTAGATGATCCCAACTACTGCAAGTATCATCGAGTCAT
CAATCACCCAATAGAAAAATGTTTTGCGCTGAAGGAGCTAATTCTAAGGTTGGCTCGTGAGAAAAAGATCGAGCTAGACTTGGAGGAAGTAGCTCAAACAAACCATGCCA
CAATGACGATAATGCTGGATGCTCCTCCATCAACATCAATGTTTGAGAAAAGAGAAAGTCTGGTCCAATTCGGGACCTGTGAGCCTGTGGTTGTTCGATTCCAGCAGAAA
ATTGTGTTGGAAGATTCTAGAAAAAAGAAAAAAATTGAAGAGGATGATGAAGGGTGGATAGTTGTGACCCGTCGGAAGAAAAGACAACTACATACTATTAAAAAAGAGTC
CCGCTCCTATCAAAATTATAGGAGAGGGAACGTGTCCCAAAAAATAATAATAAGAAGAAGACTTGGAAGCCTAAGCTTGTGCAGGAGGAAAACGAGGATTCTCCTTGACC
TCAGCGTCTGGTAA
Protein sequenceShow/hide protein sequence
MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVINHPIEKCFALKELILRLAREKKIELDLEEVAQTNHATMTIMLDAPPSTSMFEKRESLVQFGTCEPVVVRFQQK
IVLEDSRKKKKIEEDDEGWIVVTRRKKRQLHTIKKESRSYQNYRRGNVSQKIIIRRRLGSLSLCRRKTRILLDLSVW